Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Reverse (-)

34704470 .. 34707052

Gene Structure 2583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G388100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAGATGGAGGTGCCTCTATTATTCAATACTGTGAACAACGTGCATTCCCTGGGTTTAACAACAACTTAGTCGTTAATGAGGCCGGTGAAGATGTGGAGGCTGAACTTTTGAATTGTCGGTATATCTTACCTCCACAGAGTGCCTTCTACATGCTTATACCACCTGCATTTATCAAGAACTTCAATAGACGAAGACTTGGCAAATGTACTATGAGAGGCCCTAGTGGAAAATGTTGGGCCGTGGAACTGGAACAGAGACAGGATGGCTTGTTCTTCCATAAGGGTTGGCCTGGTTTTGTGAAGGATCATTTTATAGAACTTGAGGACTTTCTGATTTTCTGTTATGATGGTGGCTCAGAGTTTGATGTCACCATCTATGATAAAACTTGTTGCGAGAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

136

Amino Acids

15.54

Weight (kDa)

4.9

Isoelectric Point (pI)

57.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	315
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	29, 115, 187
AjnI	CCWGG	2 cut(s)	52, 292
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	4 cut(s)	84, 220, 240, 290
AspS9I	GGNCC	2 cut(s)	221, 240
AsuHPI	GGTGA	2 cut(s)	101, 364
BanI	GGYRCC	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	4 cut(s)	2, 260, 344, 383
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	2 cut(s)	54, 294
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	175
Bme1390I	CCNGG	2 cut(s)	54, 294
BmgT120I	GGNCC	2 cut(s)	221, 240
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	2 cut(s)	54, 294
BpiI	GAAGAC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	52, 53, 243
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	54, 294
BseDI	CCNNGG	3 cut(s)	52, 53, 243
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	255
BshFI	GGCC	4 cut(s)	86, 222, 242, 292
BshNI	GGYRCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	47
BsnI	GGCC	4 cut(s)	86, 222, 242, 292
Bsp143I	GATC	1 cut(s)	307
BspANI	GGCC	4 cut(s)	86, 222, 242, 292
BspCNI	CTCAG	1 cut(s)	371
BspLI	GGNNCC	1 cut(s)	16
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	255
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	52, 53, 243
BssMI	GATC	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	54, 294
Bst4CI	ACNGT	1 cut(s)	35
BstDEI	CTNAG	2 cut(s)	70, 358
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	307
BstNI	CCWGG	2 cut(s)	54, 294
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	2 cut(s)	52, 292
BstV2I	GAAGAC	1 cut(s)	202
BsuRI	GGCC	4 cut(s)	86, 222, 242, 292
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	221, 240
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	7 cut(s)	86, 104, 222, 242, 270, 292, 357
CviKI_1	RGCY	7 cut(s)	86, 104, 222, 242, 270, 292, 357
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	70, 358
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
DraIII	CACNNNGTG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	52, 292
FaeI	CATG	1 cut(s)	157
FaiI	YATR	8 cut(s)	126, 155, 161, 215, 282, 317, 348, 381
FatI	CATG	1 cut(s)	153
FokI	GGATG	1 cut(s)	278
FspBI	CTAG	1 cut(s)	225
HaeIII	GGCC	4 cut(s)	86, 222, 242, 292
HapII	CCGG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	157
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	2 cut(s)	101, 364
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	336, 361
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	157, 298
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	47, 170
HpyF3I	CTNAG	2 cut(s)	70, 358
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	8 cut(s)	39, 66, 100, 180, 236, 248, 279, 306
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	4 cut(s)	17, 104, 207, 268
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	7 cut(s)	5, 28, 76, 94, 144, 212, 319
MseI	TTAA	2 cut(s)	60, 78
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	54, 294
Mva1269I	GAATGC	1 cut(s)	47
MvaI	CCWGG	2 cut(s)	54, 294
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	175
PasI	CCCWGGG	1 cut(s)	53
PctI	GAATGC	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	52, 292
PspGI	CCWGG	2 cut(s)	52, 292
PspN4I	GGNNCC	1 cut(s)	16
PspPI	GGNCC	2 cut(s)	221, 240
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	60, 78
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	2 cut(s)	221, 240
ScrFI	CCNGG	2 cut(s)	54, 294
SetI	ASST	4 cut(s)	16, 46, 136, 169
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	52, 292
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	46
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	60, 78
Tru9I	TTAA	2 cut(s)	60, 78
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.