Prupe.4G206800_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Reverse (-)
12899208 .. 12900077
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G206800.1

Sequence Viewer

Length: 288 bp
ATGGCAAGGAAACTTACGAAGCGTTCAGTAAAGAAAGAATCGTTTTTCAAGATCCTGCTTGGTGACTTCTCTAAGCATCTGCATATATCACCGGTGTTTATCAAGAACTTCAACGGAGGATCACTTCGCAAATGTTCTCTTAGAGGCCCAAGTGGGAAAGGGAGGGCTGTGGAATTGGAAGAGAGAGAGAATGGCTTGTTCTTCTCTAAGGGTTTACAGGGTTTTGTGAAGGATCATCATTTAGAAGTTGGGAATTTCCTGGTTTTCCGTTATGATGGTGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

10.0

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 46, 127, 240
AcsI RAATTY 1 cut(s) 253
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 2 cut(s) 49, 112
AjnI CCWGG 1 cut(s) 258
AlwI GGATC 3 cut(s) 46, 127, 240
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 253
AsiGI ACCGGT 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 74, 81
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 85
BsaWI WCCGGW 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 91
BseBI CCWGG 1 cut(s) 260
BshFI GGCC 1 cut(s) 147
BshTI ACCGGT 1 cut(s) 91
BsiSI CCGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 51, 119, 232
BspANI GGCC 1 cut(s) 147
BspPI GGATC 3 cut(s) 46, 127, 240
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssMI GATC 3 cut(s) 51, 119, 232
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 72, 140, 207
BstKTI GATC 3 cut(s) 54, 122, 235
BstMBI GATC 3 cut(s) 51, 119, 232
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BsuRI GGCC 1 cut(s) 147
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 146
CspAI ACCGGT 1 cut(s) 91
CviJI RGCY 3 cut(s) 147, 167, 195
CviKI_1 RGCY 3 cut(s) 147, 167, 195
DdeI CTNAG 3 cut(s) 72, 140, 207
DpnI GATC 3 cut(s) 53, 121, 234
DpnII GATC 3 cut(s) 51, 119, 232
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 258
FaiI YATR 4 cut(s) 84, 86, 273, 286
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 92
HinfI GANTC 2 cut(s) 38, 281
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 74, 81
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 2 cut(s) 49, 103
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 3 cut(s) 72, 140, 207
Kzo9I GATC 3 cut(s) 51, 119, 232
LpnPI CCDG 5 cut(s) 68, 105, 203, 245, 272
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 53, 121, 234
MboI GATC 3 cut(s) 51, 119, 232
MboII GAAGA 2 cut(s) 191, 193
MflI RGATCY 1 cut(s) 51
MluCI AATT 2 cut(s) 173, 253
MnlI CCTC 3 cut(s) 110, 137, 156
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
NdeII GATC 3 cut(s) 51, 119, 232
NmuCI GTSAC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 38, 281
PinAI ACCGGT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 51
Sau3AI GATC 3 cut(s) 51, 119, 232
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 260
SfaNI GCATC 1 cut(s) 85
SgrAI CRCCGGYG 1 cut(s) 91
Sse9I AATT 2 cut(s) 173, 253
StyD4I CCNGG 1 cut(s) 258
TasI AATT 2 cut(s) 173, 253
TfiI GAWTC 2 cut(s) 38, 281
TseFI GTSAC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 62
TspGWI ACGGA 2 cut(s) 129, 257
XapI RAATTY 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.