Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000357.1

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

92552 .. 94288

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000357.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

atgagaggaaaaaggtggcagggtgccataactccattggagttgggaaaagtcatatcacatcactgtaatgtgaaaaagcttgcagacccaaagcgtggtcacagtgttacctgggatgcagcatcaaaatatcaggagcacaaacctcgtataccacgtgcgtttgtgaagaacttcaatggtcgtgtaccacgaatgtgtggccttagaggcccttgtggaaacttgtgggctgtgaatttaaaagagatcaaggatcgcgtggttttccataagggttggcagagttttgcaaagcatcattttctggaagttggggatttcttgactttcactaaagatgatggttcaatttttgatgtcataatttatgataaaagctactgtgagaagaatgttgaaacagccaagagcaggattggcaatgttgtggacagaacaattagtcttatgaacaataaaactataatgcttcaagatccaactgggaggtcatgggctattaaactcaacgaaacaccaaggggtcaaatgcgtatggaaggctggtgtaatgtttgcaaagagaaccaaatttcatttggagacacccttgttattgaggtagtcaagtattctgtacttcaactccatgtttataaagtaggagcagccctggatgtcgaaactcaaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

25.79

Weight (kDa)

9.51

Isoelectric Point (pI)

18.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	154
AccII	CGCG	1 cut(s)	264
AclWI	GGATC	2 cut(s)	267, 476
AcsI	RAATTY	2 cut(s)	241, 576
AcvI	CACGTG	1 cut(s)	161
AfaI	GTAC	2 cut(s)	192, 624
AfiI	CCNNNNNNNGG	2 cut(s)	98, 417
AgsI	TTSAA	5 cut(s)	181, 354, 404, 479, 629
AjnI	CCWGG	2 cut(s)	113, 657
AleI	CACNNNNGTG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	82, 384, 678
AluI	AGCT	3 cut(s)	82, 384, 678
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	267, 476
AoxI	GGCC	2 cut(s)	205, 214
ApeKI	GCWGC	2 cut(s)	122, 653
ApoI	RAATTY	2 cut(s)	241, 576
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	134, 665
BccI	CCATC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	115, 659
BcoDI	GTCTC	1 cut(s)	582
BfaI	CTAG	1 cut(s)	679
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	123, 654
BlsI	GCNGC	2 cut(s)	124, 655
Bme1390I	CCNGG	2 cut(s)	115, 659
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	2 cut(s)	115, 659
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	109, 134, 310
BmuI	ACTGGG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	114, 524, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 417
Bse1I	ACTGG	1 cut(s)	493
Bse3DI	GCAATG	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	115, 659
BseDI	CCNNGG	3 cut(s)	114, 524, 657
BseGI	GGATG	2 cut(s)	124, 667
BseLI	CCNNNNNNNGG	2 cut(s)	98, 417
BseMI	GCAATG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	134, 665
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	207, 216
BshNI	GGYRCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	98, 417
BsmAI	GTCTC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	207, 216
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	3 cut(s)	252, 259, 481
BspANI	GGCC	2 cut(s)	207, 216
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	2 cut(s)	267, 476
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	493
BssECI	CCNNGG	3 cut(s)	114, 524, 657
BssMI	GATC	3 cut(s)	252, 259, 481
BssNAI	GTATAC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	524
Bst1107I	GTATAC	1 cut(s)	155
Bst2UI	CCWGG	2 cut(s)	115, 659
Bst4CI	ACNGT	3 cut(s)	68, 107, 389
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	124, 667
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	3 cut(s)	255, 262, 484
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	3 cut(s)	252, 259, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 423
BstNI	CCWGG	2 cut(s)	115, 659
BstSCI	CCNGG	2 cut(s)	113, 657
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	134, 665
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BstZ17I	GTATAC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	207, 216
BtsCI	GGATG	2 cut(s)	124, 667
BtsIMutI	CAGTG	2 cut(s)	64, 112
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	191, 623
CviAII	CATG	2 cut(s)	498, 635
CviQI	GTAC	2 cut(s)	191, 623
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	254, 261, 483
DpnII	GATC	3 cut(s)	252, 259, 481
DraI	TTTAAA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	524
Eco72I	CACGTG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	113, 657
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	2 cut(s)	501, 638
FatI	CATG	2 cut(s)	497, 634
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	123, 654
FokI	GGATG	2 cut(s)	131, 674
Fsp4HI	GCNGC	2 cut(s)	123, 654
FspBI	CTAG	1 cut(s)	679
GluI	GCNGC	2 cut(s)	123, 654
HaeIII	GGCC	2 cut(s)	207, 216
Hin1II	CATG	2 cut(s)	501, 638
HindIII	AAGCTT	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	155, 191, 436
Hpy188III	TCNNGA	4 cut(s)	137, 311, 328, 479
Hpy8I	GTNNAC	3 cut(s)	155, 191, 436
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	3 cut(s)	68, 107, 389
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	86, 122, 296, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 423
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	501, 638
Kzo9I	GATC	3 cut(s)	252, 259, 481
LmnI	GCTCC	2 cut(s)	139, 650
Lsp1109I	GCAGC	2 cut(s)	134, 665
LweI	GCATC	3 cut(s)	109, 134, 310
MaeI	CTAG	1 cut(s)	679
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	101, 109
MalI	GATC	3 cut(s)	254, 261, 483
MboI	GATC	3 cut(s)	252, 259, 481
MboII	GAAGA	2 cut(s)	184, 406
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	241, 354, 369, 444, 576
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	4 cut(s)	159, 206, 486, 598
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	2 cut(s)	245, 507
MslI	CAYNNNNRTG	2 cut(s)	69, 199
MspR9I	CCNGG	2 cut(s)	115, 659
MvaI	CCWGG	2 cut(s)	115, 659
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	213, 423
NdeII	GATC	3 cut(s)	252, 259, 481
NlaIII	CATG	2 cut(s)	501, 638
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	157, 193
PdmI	GAANNNNTTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	124, 655
PmaCI	CACGTG	1 cut(s)	161
PmlI	CACGTG	1 cut(s)	161
Ppu21I	YACGTR	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	113, 657
PspCI	CACGTG	1 cut(s)	161
PspGI	CCWGG	2 cut(s)	113, 657
PspN4I	GGNNCC	1 cut(s)	25
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	2 cut(s)	192, 624
RsaNI	GTAC	2 cut(s)	191, 623
RseI	CAYNNNNRTG	2 cut(s)	69, 199
SaqAI	TTAA	2 cut(s)	245, 507
SatI	GCNGC	2 cut(s)	123, 654
Sau3AI	GATC	3 cut(s)	252, 259, 481
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	115, 659
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	17, 84, 116, 151, 163, 386, 497, 609, 680
SfaNI	GCATC	3 cut(s)	109, 134, 310
SfiI	GGCCNNNNNGGCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	69, 199
Sse9I	AATT	5 cut(s)	241, 354, 369, 444, 576
SspMI	CTAG	1 cut(s)	679
StyD4I	CCNGG	2 cut(s)	113, 657
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	3 cut(s)	68, 107, 389
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	666
TasI	AATT	5 cut(s)	241, 354, 369, 444, 576
TatI	WGTACW	1 cut(s)	622
Tru1I	TTAA	2 cut(s)	245, 507
Tru9I	TTAA	2 cut(s)	245, 507
TscAI	CASTG	2 cut(s)	71, 112
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	122, 653
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	470, 570
TspRI	CASTG	2 cut(s)	71, 112
Van91I	CCANNNNNTGG	1 cut(s)	98
XapI	RAATTY	2 cut(s)	241, 576
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 581
XmiI	GTMKAC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.