Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Reverse (-)

2623565 .. 2625282

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCGAGGAAATCAACAAATCCTGCACTGAGAGTGCGATCCTTTTTCAAGCCCCTAGTTCATGATGACTTCTCTCGGCATTTGTGTCTGCCACCTTTATTTATGGAGAATTTCAATGGACGGCCTCCCTGCAAATGCACTCTTAGAAGCCCGAGTGGAGAATCGTGGACAGTAGGATTGGAAGGGAGAAAGGAAGGAAAGTTTTTCTTCCGCAAGGGTTGGCGTCATTTCGTGGAGGATCATCTCTTAGAAATCGGGAATTTCTTGGTTTTTGAGTACGATGGCCACACAAAGTTTGATGTCAAAATCTATAATCCAACTGGATGCGAAAAGGAGGAATCTGCAGCTGCCAAGAAGACAACTGGAAATCAAGCTAGAATTCGCAACCGAAAGAAAAGCATGTCATACGAGCCTGCTGATGTGAAACAAACATCAGATGGACTCATCGTGTTCAGATCCAAGTATACATGCTTCGAAGGAGATGTGTCGAAGAACCCTTATCGAATGACCGTACCGAAGGAACTAGCTGTAGCAGTAGGTCTCATAAAAAAGGAGAGGGTGAGACTTATAGATCCAAATGGGAAGTCATGGAAAGTTAAGCTCCGGCTCGATAATACAAAGTATGGTAGCGGCCATTTGCGCATGACGGAAGGGTTGATTGCATGTTGGCGTGCGAACAACGTTTCAACCGGGGACACCGTCGTGTTCGAGCTTGTCAATAAAAAGAGAAGTGAAATGAAGATTCATTTCTTCAGAGCTGAAGCCGGAGGAAAGAGGCCACGTCTTGTACTTGAACTTGATGCCTCTGACCCTGATGTGGAAAACTCAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

278

Amino Acids

31.65

Weight (kDa)

9.64

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	15 - 104	5.4e-19	B3 DNA binding domain
B3	PF02362	167 - 253	8.8e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	464
AciI	CCGC	2 cut(s)	211, 630
AclI	AACGTT	1 cut(s)	681
AclWI	GGATC	4 cut(s)	33, 246, 450, 566
AcoI	YGGCCR	2 cut(s)	283, 631
AcsI	RAATTY	3 cut(s)	109, 259, 378
AcuI	CTGAAG	2 cut(s)	736, 780
AcyI	GRCGYC	1 cut(s)	223
AfaI	GTAC	3 cut(s)	278, 513, 789
AfiI	CCNNNNNNNGG	1 cut(s)	817
AgsI	TTSAA	4 cut(s)	49, 115, 687, 794
AjiI	CACGTC	1 cut(s)	782
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	7 cut(s)	347, 374, 527, 601, 712, 758, 831
AluI	AGCT	7 cut(s)	347, 374, 527, 601, 712, 758, 831
Alw26I	GTCTC	2 cut(s)	545, 556
AlwI	GGATC	4 cut(s)	33, 246, 450, 566
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	4 cut(s)	122, 283, 631, 776
ApeKI	GCWGC	2 cut(s)	344, 347
ApoI	RAATTY	3 cut(s)	109, 259, 378
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AspLEI	GCGC	1 cut(s)	642
AsuC2I	CCSGG	1 cut(s)	691
AsuHPI	GGTGA	1 cut(s)	571
AsuII	TTCGAA	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	2 cut(s)	334, 356
BccI	CCATC	2 cut(s)	275, 431
BceAI	ACGGC	1 cut(s)	137
BcnI	CCSGG	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	545, 556
BfaI	CTAG	4 cut(s)	56, 375, 524, 832
BfmI	CTRYAG	2 cut(s)	342, 528
BisI	GCNGC	3 cut(s)	345, 348, 631
BlsI	GCNGC	3 cut(s)	346, 349, 632
Bme1390I	CCNGG	1 cut(s)	691
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	782
BmrFI	CCNGG	1 cut(s)	691
BmsI	GCATC	2 cut(s)	314, 790
BpiI	GAAGAC	1 cut(s)	362
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	811
BpuMI	CCSGG	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse1I	ACTGG	2 cut(s)	325, 367
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	325, 367
BseXI	GCAGC	2 cut(s)	334, 356
BsgI	GTGCAG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	124, 285, 633, 778
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	3 cut(s)	604, 690, 765
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	2 cut(s)	545, 556
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	4 cut(s)	124, 285, 633, 778
Bso31I	GGTCTC	1 cut(s)	545
BsoBI	CYCGRG	1 cut(s)	151
Bsp119I	TTCGAA	1 cut(s)	474
Bsp143I	GATC	4 cut(s)	38, 238, 455, 571
BspACI	CCGC	2 cut(s)	211, 630
BspANI	GGCC	4 cut(s)	124, 285, 633, 778
BspCNI	CTCAG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	4 cut(s)	33, 246, 450, 566
BspT104I	TTCGAA	1 cut(s)	474
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	325, 367
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	4 cut(s)	38, 238, 455, 571
BssNAI	GTATAC	1 cut(s)	465
BssNI	GRCGYC	1 cut(s)	223
Bst1107I	GTATAC	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	172, 511, 700
BstACI	GRCGYC	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	414, 672
BstDEI	CTNAG	3 cut(s)	29, 143, 247
BstF5I	GGATG	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	4 cut(s)	41, 241, 458, 574
BstMAI	GTCTC	2 cut(s)	545, 556
BstMBI	GATC	4 cut(s)	38, 238, 455, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	639
BstNSI	RCATGY	3 cut(s)	403, 471, 666
BstSCI	CCNGG	1 cut(s)	689
BstSFI	CTRYAG	2 cut(s)	342, 528
BstV1I	GCAGC	2 cut(s)	334, 356
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	2 cut(s)	455, 571
BstYI	RGATCY	2 cut(s)	455, 571
BstZ17I	GTATAC	1 cut(s)	465
BsuRI	GGCC	4 cut(s)	124, 285, 633, 778
BtrI	CACGTC	1 cut(s)	782
BtsCI	GGATG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	414, 672
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	642
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	277, 512, 788
CviAII	CATG	6 cut(s)	62, 400, 468, 588, 643, 663
CviQI	GTAC	3 cut(s)	277, 512, 788
DdeI	CTNAG	3 cut(s)	29, 143, 247
DpnI	GATC	4 cut(s)	40, 240, 457, 573
DpnII	GATC	4 cut(s)	38, 238, 455, 571
EaeI	YGGCCR	2 cut(s)	283, 631
Eco31I	GGTCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	736, 780
Eco88I	CYCGRG	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	378
FaeI	CATG	6 cut(s)	65, 403, 471, 591, 646, 666
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	6 cut(s)	61, 399, 467, 587, 642, 662
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	3 cut(s)	345, 348, 631
FokI	GGATG	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	345, 348, 631
FspBI	CTAG	4 cut(s)	56, 375, 524, 832
FspI	TGCGCA	1 cut(s)	641
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	3 cut(s)	345, 348, 631
HaeIII	GGCC	4 cut(s)	124, 285, 633, 778
HapII	CCGG	3 cut(s)	604, 690, 765
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	642
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	6 cut(s)	65, 403, 471, 591, 646, 666
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	161, 338, 441, 742
HpaII	CCGG	3 cut(s)	604, 690, 765
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	168, 465
Hpy188I	TCNGA	4 cut(s)	436, 455, 755, 808
Hpy188III	TCNNGA	2 cut(s)	62, 256
Hpy8I	GTNNAC	2 cut(s)	168, 465
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	5 cut(s)	176, 188, 470, 511, 644
HpyCH4III	ACNGT	3 cut(s)	172, 511, 700
HpyCH4IV	ACGT	2 cut(s)	681, 781
HpyCH4V	TGCA	5 cut(s)	26, 132, 138, 344, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	639
HpyF3I	CTNAG	3 cut(s)	29, 143, 247
HpySE526I	ACGT	2 cut(s)	681, 781
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	6 cut(s)	65, 403, 471, 591, 646, 666
HspAI	GCGC	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	38, 238, 455, 571
LmnI	GCTCC	1 cut(s)	606
LpnPI	CCDG	9 cut(s)	36, 142, 306, 348, 426, 617, 703, 778, 825
Lsp1109I	GCAGC	2 cut(s)	334, 356
LweI	GCATC	2 cut(s)	314, 790
MaeI	CTAG	4 cut(s)	56, 375, 524, 832
MaeII	ACGT	2 cut(s)	681, 781
MalI	GATC	4 cut(s)	40, 240, 457, 573
MboI	GATC	4 cut(s)	38, 238, 455, 571
MboII	GAAGA	5 cut(s)	199, 367, 502, 742, 751
MflI	RGATCY	2 cut(s)	455, 571
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	3 cut(s)	109, 259, 378
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	7 cut(s)	135, 229, 328, 549, 761, 768, 814
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	701
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	3 cut(s)	604, 690, 765
MspR9I	CCNGG	1 cut(s)	691
MwoI	GCNNNNNNNGC	1 cut(s)	639
NciI	CCSGG	1 cut(s)	691
NdeII	GATC	4 cut(s)	38, 238, 455, 571
NlaIII	CATG	6 cut(s)	65, 403, 471, 591, 646, 666
NmeAIII	GCCGAG	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	641
NspI	RCATGY	3 cut(s)	403, 471, 666
NspV	TTCGAA	1 cut(s)	474
OliI	CACNNNNGTG	1 cut(s)	701
PagI	TCATGA	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	161, 338, 742
PflFI	GACNNNGTC	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	346, 349, 632
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Psp1406I	AACGTT	1 cut(s)	681
PstI	CTGCAG	1 cut(s)	346
PsuI	RGATCY	2 cut(s)	455, 571
PsyI	GACNNNGTC	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	278, 513, 789
RsaNI	GTAC	3 cut(s)	277, 512, 788
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	3 cut(s)	345, 348, 631
Sau3AI	GATC	4 cut(s)	38, 238, 455, 571
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	1 cut(s)	691
SfaNI	GCATC	2 cut(s)	314, 790
SfcI	CTRYAG	2 cut(s)	342, 528
SfuI	TTCGAA	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	826
SmoI	CTYRAG	1 cut(s)	826
Sse9I	AATT	3 cut(s)	109, 259, 378
SsiI	CCGC	2 cut(s)	211, 630
SspMI	CTAG	4 cut(s)	56, 375, 524, 832
StyD4I	CCNGG	1 cut(s)	689
TaaI	ACNGT	3 cut(s)	172, 511, 700
TaiI	ACGT	2 cut(s)	684, 784
TaqI	TCGA	5 cut(s)	474, 488, 502, 609, 708
TasI	AATT	3 cut(s)	109, 259, 378
TatI	WGTACW	1 cut(s)	787
TauI	GCSGC	1 cut(s)	633
TfiI	GAWTC	3 cut(s)	161, 338, 742
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	2 cut(s)	344, 347
TspDTI	ATGAA	3 cut(s)	50, 734, 752
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	698
XapI	RAATTY	3 cut(s)	109, 259, 378
XceI	RCATGY	3 cut(s)	403, 471, 666
XmiI	GTMKAC	1 cut(s)	464
XspI	CTAG	4 cut(s)	56, 375, 524, 832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.