FvH4_2g27400

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000210
Physical Location & Seq
Reverse (-)
21763848 .. 21767142
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27400.t2

Sequence Viewer

Length: 789 bp
ATGGCTAGGAAGATTCAGCGTTCAGCAAGAAGACCAGCATTTTTCAAGGGCCTTAAGGATGATTTTTCTCGGCAACTGCGTATACCTTCAGCATTCATCAAGAAATTGAACACAAGCTCACCGCATCGTCTCAGAGGTCCTAGTGGAGAATATTGGGATGTGGAATTGGGAAAGAGAGGCAATCAGATGTTTTTTCATAGGGGGTGGGAGAAATTTGTGCAGCATCATCCTGTAGAAGTTGGGGATCTTCTGATTTTCAGTTATGATGGTGTGTCAATGTTCAATGTCAGAATATATGGTAAAACTTTCTGCGAGAAGAATGTAAAAGCAGCTAAGAGCAGTAGTGAGAGTAACGGTAATGGTAATGCTGCTAAAAGAAGTGATAAGTTACGAAGGAGAAGGTACGGTCATGCTGAGAAACGAAGGGGAGTTGATGATGAAGAAGAAATTTTCATTCCGTTCCAATCAGAGAATCCTTTTGTCTACAGAACTTTGGGGACAAATTCATTGTATGAAGTGCATGTGCCGAGGGAAGTAATCAGAAAGGAAGGTTATAGGGTTGGGATGACCTTAGAGATTAAAGATGTATTTGGGATATCCTGGAAAGCTACAGTCGGTGGTTCTCCTGAAGCCGGTCGTATGCTGATAAGGTCGGGACTGCCAAACATTTGCAGAGCAAACCAAGCTTCACCTGGGGACACTGTCATCTTTGAGTTTGTCAAGCCAGGAGTAGTGCAACTTCATGTTATCAAAGCAGGAGCTTACAAGCAGCCTCGGATCATTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

263

Amino Acids

29.87

Weight (kDa)

10.14

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 71 - 156 4.3e-15 B3 DNA binding domain
B3 PF02362 228 - 299 3.4e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 82, 483
AciI CCGC 1 cut(s) 122
AclWI GGATC 2 cut(s) 252, 785
AcsI RAATTY 3 cut(s) 212, 447, 502
AcuI CTGAAG 2 cut(s) 72, 648
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 632
AflII CTTAAG 1 cut(s) 53
AgsI TTSAA 3 cut(s) 46, 109, 283
AjnI CCWGG 3 cut(s) 599, 691, 724
AluBI AGCT 5 cut(s) 117, 332, 608, 686, 761
AluI AGCT 5 cut(s) 117, 332, 608, 686, 761
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 252, 785
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 4 cut(s) 220, 329, 368, 769
ApoI RAATTY 3 cut(s) 212, 447, 502
AspS9I GGNCC 2 cut(s) 49, 137
AsuHPI GGTGA 2 cut(s) 111, 681
AvaII GGWCC 1 cut(s) 137
BarI GAAGNNNNNNTAC 2 cut(s) 723, 755
BbsI GAAGAC 1 cut(s) 37
BbvI GCAGC 4 cut(s) 232, 341, 355, 781
BccI CCATC 1 cut(s) 260
BciT130I CCWGG 3 cut(s) 601, 693, 726
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 6, 141
BfmI CTRYAG 3 cut(s) 231, 484, 609
BfrI CTTAAG 1 cut(s) 53
BisI GCNGC 4 cut(s) 221, 330, 369, 770
BlsI GCNGC 4 cut(s) 222, 331, 370, 771
Bme1390I CCNGG 3 cut(s) 601, 693, 726
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 49, 137
BmrFI CCNGG 3 cut(s) 601, 693, 726
BmsI GCATC 2 cut(s) 133, 232
BpiI GAAGAC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 527, 692, 773
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 632
BseBI CCWGG 3 cut(s) 601, 693, 726
BseDI CCNNGG 3 cut(s) 527, 692, 773
BseGI GGATG 4 cut(s) 64, 163, 226, 570
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 145, 405
BseXI GCAGC 4 cut(s) 232, 341, 355, 781
BsgI GTGCAG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 1 cut(s) 51
BsiEI CGRYCG 1 cut(s) 637
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 3 cut(s) 511, 669, 710
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
BsmFI GGGAC 3 cut(s) 511, 669, 710
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 244, 777
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 144, 406
BspPI GGATC 2 cut(s) 252, 785
BspTI CTTAAG 1 cut(s) 53
BsrFI RCCGGY 1 cut(s) 632
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 3 cut(s) 527, 692, 773
BssMI GATC 2 cut(s) 244, 777
BssNAI GTATAC 1 cut(s) 83
Bst1107I GTATAC 1 cut(s) 83
Bst2UI CCWGG 3 cut(s) 601, 693, 726
Bst4CI ACNGT 4 cut(s) 356, 407, 613, 703
BstAFI CTTAAG 1 cut(s) 53
BstDEI CTNAG 4 cut(s) 131, 333, 414, 571
BstF5I GGATG 4 cut(s) 64, 163, 226, 570
BstKTI GATC 2 cut(s) 247, 780
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 244, 777
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNI CCWGG 3 cut(s) 601, 693, 726
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 3 cut(s) 599, 691, 724
BstSFI CTRYAG 3 cut(s) 231, 484, 609
BstV1I GCAGC 4 cut(s) 232, 341, 355, 781
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BstZ17I GTATAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 4 cut(s) 64, 163, 226, 570
BtsIMutI CAGTG 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 49, 137
Csp6I GTAC 1 cut(s) 403
CviAII CATG 3 cut(s) 410, 521, 743
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 4 cut(s) 131, 333, 414, 571
DpnI GATC 2 cut(s) 246, 779
DpnII GATC 2 cut(s) 244, 777
Eco32I GATATC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 2 cut(s) 72, 648
EcoO109I RGGNCCY 2 cut(s) 49, 137
EcoRII CCWGG 3 cut(s) 599, 691, 724
EcoRV GATATC 1 cut(s) 597
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 3 cut(s) 413, 524, 746
FaqI GGGAC 3 cut(s) 511, 669, 710
FatI CATG 3 cut(s) 409, 520, 742
FblI GTMKAC 2 cut(s) 82, 483
Fnu4HI GCNGC 4 cut(s) 221, 330, 369, 770
FokI GGATG 4 cut(s) 71, 170, 213, 577
Fsp4HI GCNGC 4 cut(s) 221, 330, 369, 770
FspBI CTAG 2 cut(s) 6, 141
GluI GCNGC 4 cut(s) 221, 330, 369, 770
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 633
Hin1II CATG 3 cut(s) 413, 524, 746
HindIII AAGCTT 1 cut(s) 684
HinfI GANTC 2 cut(s) 13, 472
HpaII CCGG 1 cut(s) 633
HphI GGTGA 2 cut(s) 111, 681
Hpy166II GTNNAC 2 cut(s) 83, 484
Hpy188I TCNGA 7 cut(s) 134, 186, 252, 290, 469, 542, 777
Hpy188III TCNNGA 3 cut(s) 100, 626, 654
Hpy8I GTNNAC 2 cut(s) 83, 484
HpyAV CCTTC 5 cut(s) 96, 387, 393, 417, 542
HpyCH4III ACNGT 4 cut(s) 356, 407, 613, 703
HpyCH4V TGCA 4 cut(s) 220, 520, 672, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 4 cut(s) 131, 333, 414, 571
Hsp92II CATG 3 cut(s) 413, 524, 746
Kzo9I GATC 2 cut(s) 244, 777
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 4 cut(s) 232, 341, 355, 781
LweI GCATC 2 cut(s) 133, 232
MaeI CTAG 2 cut(s) 6, 141
MaeIII GTNAC 2 cut(s) 350, 387
MalI GATC 2 cut(s) 246, 779
MboI GATC 2 cut(s) 244, 777
MboII GAAGA 6 cut(s) 22, 42, 239, 328, 452, 455
MflI RGATCY 1 cut(s) 244
MluCI AATT 5 cut(s) 104, 164, 212, 447, 502
MnlI CCTC 4 cut(s) 128, 170, 522, 783
MseI TTAA 3 cut(s) 54, 579, 783
MspCI CTTAAG 1 cut(s) 53
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 3 cut(s) 601, 693, 726
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 3 cut(s) 601, 693, 726
MwoI GCNNNNNNNGC 1 cut(s) 683
NdeII GATC 2 cut(s) 244, 777
NlaIII CATG 3 cut(s) 413, 524, 746
NmeAIII GCCGAG 2 cut(s) 49, 552
NspI RCATGY 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 13, 472
PflFI GACNNNGTC 1 cut(s) 701
PfoI TCCNGGA 1 cut(s) 599
PkrI GCNGC 4 cut(s) 222, 331, 370, 771
PpuMI RGGWCCY 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 599, 691, 724
PspGI CCWGG 3 cut(s) 599, 691, 724
PspPI GGNCC 2 cut(s) 49, 137
PspPPI RGGWCCY 1 cut(s) 137
PsuI RGATCY 1 cut(s) 244
PsyI GACNNNGTC 1 cut(s) 701
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 54, 579, 783
SatI GCNGC 4 cut(s) 221, 330, 369, 770
Sau3AI GATC 2 cut(s) 244, 777
Sau96I GGNCC 2 cut(s) 49, 137
ScrFI CCNGG 3 cut(s) 601, 693, 726
SfaNI GCATC 2 cut(s) 133, 232
SfcI CTRYAG 3 cut(s) 231, 484, 609
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 5 cut(s) 104, 164, 212, 447, 502
SsiI CCGC 1 cut(s) 122
SspI AATATT 1 cut(s) 152
SspMI CTAG 2 cut(s) 6, 141
StyD4I CCNGG 3 cut(s) 599, 691, 724
TaaI ACNGT 4 cut(s) 356, 407, 613, 703
TasI AATT 5 cut(s) 104, 164, 212, 447, 502
TfiI GAWTC 2 cut(s) 13, 472
Tru1I TTAA 3 cut(s) 54, 579, 783
Tru9I TTAA 3 cut(s) 54, 579, 783
TscAI CASTG 1 cut(s) 706
TseI GCWGC 4 cut(s) 220, 329, 368, 769
TspDTI ATGAA 7 cut(s) 85, 185, 442, 453, 495, 528, 731
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 1 cut(s) 706
Tth111I GACNNNGTC 1 cut(s) 701
Vha464I CTTAAG 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 137
XapI RAATTY 3 cut(s) 212, 447, 502
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 689
XmiI GTMKAC 2 cut(s) 82, 483
XspI CTAG 2 cut(s) 6, 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.