Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

25915941 .. 25917297

Gene Structure 1357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18660

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCCCAAGTCAAATATAGGTAGTAGGGAGGCCATGGTCTATAAACTCAACGAAACGACAAGGGATCGATTGCGTATGGAAGGTTGGTGTAATGTTTGTAAAGAGAACCAAATTTCATTTGGAGACACCCTTGTTATTGAGGTAGTCAAGCATTCTGTATCTCAACTTCATGTTTACAAAGGAGGAGCAGCCCTGGATGCCGAAACTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

71

Amino Acids

7.97

Weight (kDa)

6.06

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BbvI	GCAGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	33, 192
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	33, 192
BseGI	GGATG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	33
BspANI	GGCC	1 cut(s)	32
BspDI	ATCGAT	1 cut(s)	67
BspPI	GGATC	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	33, 192
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	200
Bsu15I	ATCGAT	1 cut(s)	67
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	67
CviAII	CATG	2 cut(s)	34, 170
CviJI	RGCY	3 cut(s)	32, 191, 213
CviKI_1	RGCY	3 cut(s)	32, 191, 213
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 173
FaiI	YATR	5 cut(s)	17, 35, 42, 77, 171
FatI	CATG	2 cut(s)	33, 169
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	214
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	37, 173
Hpy166II	GTNNAC	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	37, 173
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	2 cut(s)	179, 206
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	214
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MluCI	AATT	1 cut(s)	111
MnlI	CCTC	3 cut(s)	22, 133, 176
MspR9I	CCNGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	37, 173
PctI	GAATGC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	4 cut(s)	22, 85, 144, 215
SfaNI	GCATC	1 cut(s)	187
SgeI	CNNG	8 cut(s)	19, 46, 72, 143, 160, 182, 205, 206
Sse9I	AATT	1 cut(s)	111
SspMI	CTAG	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	33
TaqI	TCGA	1 cut(s)	67
TasI	AATT	1 cut(s)	111
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	105, 158
XapI	RAATTY	1 cut(s)	111
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.