MD08G1039500.v1.1

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
2900510 .. 2901871
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1039500.v1.1.491

Sequence Viewer

Length: 795 bp
ATGGATGAGAAGCTAAAGGAAGCTCTAGAGACACCAGCATTTAGAGCGCTTCTTGTCGGTGACTTCTCCAAGCATCTGCGTATACCGTCTGCGTTTATCAAGAACTTCGGAGGACGATCGCTTCGGAAATGTACTCTCAGAAACCCTAGTGGGGACTGCTGGGGTGTGAAACTTAAACAGAAAGAGGATGGCTTGTTCTTCCGAAAAGGTTGGAAGGTTTTTGTGAAGGATCATTTTCTAGAACATGGAGACTTTCTGGTCTTCGAATACGGTGGCGGATCAGAGTTTGACGTCACCATCTTTGATCGAACTTGTTGCGAGAAGAATGTCGAAGAAGCTGCCAGGAGGGCAAGTAGTAATCTTGCCGACAGCAGAACTGTCGATGATGTCGTGCGCATAGAGAGACCTGCAAGCGTTCATTTAGCAGAAACATCAACTGGATCCGTCTTGTTTAAATCGGAGAATACGTGGTTTACGAAAACTTTAAAGAAATTTAATCGAAATATTTTGACGATTCCGAAGCATGTAGCCCTAGCTGAAGGACTAGTAAGCGACGCAGGGCTTCCGAGTAGAGAGACTGTAACGCTTCAAGATCCGACCGGGAGATCATGGCTTGCTCAACTTCATGTCAGGGCAGATCGCCGCGTGCAGATGGCACGGGGATGGGGAGCTTGTGTTAGGGCAAACGAGATTTCGCCTGGGGACGACGTCGTTTTTGAGTTTGTGAAGCGAGGTGTACTGCAGCTTCATATTTTCAGAGGCAATGTGCTTACTTACATCCCCAGATGTCTCTGA

Protein Analysis

265

Amino Acids

29.81

Weight (kDa)

9.26

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 24 - 103 7e-17 B3 DNA binding domain
B3 PF02362 160 - 254 2.3e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
AatII GACGTC 2 cut(s) 294, 711
Acc16I TGCGCA 1 cut(s) 395
Acc36I ACCTGC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 82
AccII CGCG 1 cut(s) 645
AciI CCGC 2 cut(s) 276, 643
AclWI GGATC 5 cut(s) 237, 286, 435, 448, 587
AcsI RAATTY 1 cut(s) 491
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 2 cut(s) 291, 708
AfaI GTAC 2 cut(s) 133, 738
AfeI AGCGCT 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 590
AhlI ACTAGT 1 cut(s) 544
AjnI CCWGG 2 cut(s) 341, 697
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 6 cut(s) 13, 23, 338, 536, 671, 745
AluI AGCT 6 cut(s) 13, 23, 338, 536, 671, 745
Alw26I GTCTC 4 cut(s) 23, 243, 397, 569
AlwI GGATC 5 cut(s) 237, 286, 435, 448, 587
Aor51HI AGCGCT 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 338, 742
ApoI RAATTY 1 cut(s) 491
ArsI GACNNNNNNTTYG 4 cut(s) 105, 137, 698, 730
AspLEI GCGC 2 cut(s) 49, 396
AsuC2I CCSGG 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 71, 286
AsuII TTCGAA 1 cut(s) 264
BamHI GGATCC 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 729, 761
BbsI GAAGAC 1 cut(s) 253
BbvI GCAGC 2 cut(s) 325, 754
BccI CCATC 4 cut(s) 182, 305, 646, 657
BcgI CGANNNNNNTGC 6 cut(s) 297, 320, 331, 354, 361, 395
BciT130I CCWGG 2 cut(s) 343, 699
BcnI CCSGG 1 cut(s) 601
BcoDI GTCTC 4 cut(s) 23, 243, 397, 569
BcuI ACTAGT 1 cut(s) 544
BfaI CTAG 5 cut(s) 26, 147, 239, 533, 545
BfmI CTRYAG 1 cut(s) 740
BfoI RGCGCY 1 cut(s) 50
BfuAI ACCTGC 1 cut(s) 415
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 3 cut(s) 339, 643, 743
BlsI GCNGC 3 cut(s) 340, 644, 744
Bme1390I CCNGG 3 cut(s) 343, 601, 699
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 3 cut(s) 343, 601, 699
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 601
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 291, 708
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 698
BsaXI ACNNNNNCTCC 6 cut(s) 337, 367, 452, 482, 660, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 769
BseBI CCWGG 2 cut(s) 343, 699
BseDI CCNNGG 1 cut(s) 698
BseGI GGATG 4 cut(s) 10, 193, 668, 777
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 442
BseXI GCAGC 2 cut(s) 325, 754
BseYI CCCAGC 1 cut(s) 159
BsgI GTGCAG 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 645
Bsh1285I CGRYCG 2 cut(s) 119, 600
BsiEI CGRYCG 2 cut(s) 119, 600
BsiSI CCGG 1 cut(s) 600
BslFI GGGAC 2 cut(s) 167, 716
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 4 cut(s) 23, 243, 397, 569
BsmFI GGGAC 2 cut(s) 167, 716
Bso31I GGTCTC 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 264
Bsp143I GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
BspACI CCGC 2 cut(s) 276, 643
BspCNI CTCAG 1 cut(s) 150
BspFNI CGCG 1 cut(s) 645
BspLI GGNNCC 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 744
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 5 cut(s) 237, 286, 435, 448, 587
BspT104I TTCGAA 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 769
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 1 cut(s) 698
BssMI GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
BssNAI GTATAC 1 cut(s) 83
BssNI GRCGYC 2 cut(s) 291, 708
Bst1107I GTATAC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 343, 699
Bst4CI ACNGT 4 cut(s) 87, 272, 379, 580
BstACI GRCGYC 2 cut(s) 291, 708
BstBAI YACGTR 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 3 cut(s) 412, 615, 647
BstDEI CTNAG 1 cut(s) 137
BstF5I GGATG 4 cut(s) 10, 193, 668, 777
BstFNI CGCG 1 cut(s) 645
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 2 cut(s) 49, 396
BstKTI GATC 8 cut(s) 119, 232, 281, 307, 443, 595, 608, 640
BstMAI GTCTC 4 cut(s) 23, 243, 397, 569
BstMBI GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
BstMCI CGRYCG 2 cut(s) 119, 600
BstMWI GCNNNNNNNGC 2 cut(s) 44, 347
BstNI CCWGG 2 cut(s) 343, 699
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 3 cut(s) 341, 599, 697
BstSFI CTRYAG 1 cut(s) 740
BstUI CGCG 1 cut(s) 645
BstV1I GCAGC 2 cut(s) 325, 754
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 2 cut(s) 440, 592
BstYI RGATCY 2 cut(s) 440, 592
BstZ17I GTATAC 1 cut(s) 83
BtsCI GGATG 4 cut(s) 10, 193, 668, 777
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 3 cut(s) 412, 615, 647
CfoI GCGC 2 cut(s) 49, 396
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 132, 737
CviAII CATG 4 cut(s) 245, 524, 609, 626
CviQI GTAC 2 cut(s) 132, 737
DdeI CTNAG 1 cut(s) 137
DpnI GATC 8 cut(s) 118, 231, 280, 306, 442, 594, 607, 639
DpnII GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
DraI TTTAAA 2 cut(s) 454, 486
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 397
Eco47III AGCGCT 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 558
EcoRII CCWGG 2 cut(s) 341, 697
FaeI CATG 4 cut(s) 248, 527, 612, 629
FaiI YATR 7 cut(s) 83, 246, 398, 525, 610, 627, 750
FaqI GGGAC 2 cut(s) 167, 716
FatI CATG 4 cut(s) 244, 523, 608, 625
FblI GTMKAC 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 339, 643, 743
FokI GGATG 4 cut(s) 17, 200, 675, 764
Fsp4HI GCNGC 3 cut(s) 339, 643, 743
FspAI RTGCGCAY 1 cut(s) 395
FspBI CTAG 5 cut(s) 26, 147, 239, 533, 545
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 2 cut(s) 48, 395
GluI GCNGC 3 cut(s) 339, 643, 743
GsaI CCCAGC 1 cut(s) 163
HaeII RGCGCY 1 cut(s) 50
HapII CCGG 1 cut(s) 600
HgaI GACGC 1 cut(s) 563
HhaI GCGC 2 cut(s) 49, 396
Hin1I GRCGYC 2 cut(s) 291, 708
Hin1II CATG 4 cut(s) 248, 527, 612, 629
Hin6I GCGC 2 cut(s) 47, 394
HinP1I GCGC 2 cut(s) 47, 394
HinfI GANTC 1 cut(s) 514
HpaII CCGG 1 cut(s) 600
HphI GGTGA 2 cut(s) 71, 286
Hpy166II GTNNAC 3 cut(s) 83, 474, 737
Hpy188III TCNNGA 4 cut(s) 26, 100, 239, 590
Hpy8I GTNNAC 3 cut(s) 83, 474, 737
Hpy99I CGWCG 3 cut(s) 557, 710, 713
HpyAV CCTTC 3 cut(s) 208, 220, 533
HpyCH4III ACNGT 4 cut(s) 87, 272, 379, 580
HpyCH4IV ACGT 3 cut(s) 291, 467, 708
HpyCH4V TGCA 3 cut(s) 410, 649, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 347
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 3 cut(s) 291, 467, 708
Hsp92I GRCGYC 2 cut(s) 291, 708
Hsp92II CATG 4 cut(s) 248, 527, 612, 629
HspAI GCGC 2 cut(s) 47, 394
Kzo9I GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 2 cut(s) 325, 754
LweI GCATC 1 cut(s) 82
MaeI CTAG 5 cut(s) 26, 147, 239, 533, 545
MaeII ACGT 3 cut(s) 291, 467, 708
MaeIII GTNAC 3 cut(s) 59, 292, 580
MalI GATC 8 cut(s) 118, 231, 280, 306, 442, 594, 607, 639
MboI GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
MboII GAAGA 4 cut(s) 190, 253, 334, 344
MflI RGATCY 2 cut(s) 440, 592
MluCI AATT 1 cut(s) 491
MmeI TCCRAC 2 cut(s) 191, 620
MnlI CCTC 5 cut(s) 104, 178, 339, 725, 752
MseI TTAA 4 cut(s) 174, 453, 485, 495
MslI CAYNNNNRTG 1 cut(s) 661
MspI CCGG 1 cut(s) 600
MspR9I CCNGG 3 cut(s) 343, 601, 699
MvaI CCWGG 2 cut(s) 343, 699
MvnI CGCG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 44, 347
NciI CCSGG 1 cut(s) 601
NdeII GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
NlaIII CATG 4 cut(s) 248, 527, 612, 629
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 59, 292
NsbI TGCGCA 1 cut(s) 395
NspI RCATGY 1 cut(s) 527
NspV TTCGAA 1 cut(s) 264
PcsI WCGNNNNNNNCGW 3 cut(s) 387, 464, 473
PfeI GAWTC 1 cut(s) 514
PflFI GACNNNGTC 1 cut(s) 707
PkrI GCNGC 3 cut(s) 340, 644, 744
Ple19I CGATCG 1 cut(s) 119
Ppu21I YACGTR 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 341, 697
PspFI CCCAGC 1 cut(s) 159
PspGI CCWGG 2 cut(s) 341, 697
PspN4I GGNNCC 1 cut(s) 442
PstI CTGCAG 1 cut(s) 744
PsuI RGATCY 2 cut(s) 440, 592
PsyI GACNNNGTC 1 cut(s) 707
PvuI CGATCG 1 cut(s) 119
RsaI GTAC 2 cut(s) 133, 738
RsaNI GTAC 2 cut(s) 132, 737
RseI CAYNNNNRTG 1 cut(s) 661
SaqAI TTAA 4 cut(s) 174, 453, 485, 495
SatI GCNGC 3 cut(s) 339, 643, 743
Sau3AI GATC 8 cut(s) 116, 229, 278, 304, 440, 592, 605, 637
ScrFI CCNGG 3 cut(s) 343, 601, 699
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 1 cut(s) 740
SfuI TTCGAA 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 661
SpeI ACTAGT 1 cut(s) 544
Sse9I AATT 1 cut(s) 491
SsiI CCGC 2 cut(s) 276, 643
SspI AATATT 1 cut(s) 505
SspMI CTAG 5 cut(s) 26, 147, 239, 533, 545
StyD4I CCNGG 3 cut(s) 341, 599, 697
TaaI ACNGT 4 cut(s) 87, 272, 379, 580
TaiI ACGT 3 cut(s) 294, 470, 711
TaqI TCGA 5 cut(s) 264, 307, 330, 381, 499
TasI AATT 1 cut(s) 491
TatI WGTACW 2 cut(s) 131, 736
TauI GCSGC 1 cut(s) 645
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 174, 453, 485, 495
Tru9I TTAA 4 cut(s) 174, 453, 485, 495
TseFI GTSAC 2 cut(s) 59, 292
TseI GCWGC 2 cut(s) 338, 742
Tsp45I GTSAC 2 cut(s) 59, 292
TspDTI ATGAA 3 cut(s) 407, 614, 737
TspGWI ACGGA 1 cut(s) 433
Tth111I GACNNNGTC 1 cut(s) 707
XapI RAATTY 1 cut(s) 491
XbaI TCTAGA 2 cut(s) 25, 238
XceI RCATGY 1 cut(s) 527
XmiI GTMKAC 1 cut(s) 82
XspI CTAG 5 cut(s) 26, 147, 239, 533, 545
ZraI GACGTC 2 cut(s) 292, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.