Prupe.4G178300_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Forward (+)
10586371 .. 10588670
2300 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178300.1

Sequence Viewer

Length: 906 bp
ATGGCAAGGAAACTTATGAAGCGTTCAGTAAAGAAGAAATCGTTTTTCAAGATCCTGCTTGGTGACTTCTCTAAGCATCTGCGTATACCACCTGCGTTTATCAAGAACTTCAACGGAGGATCACTTGGCAAATGTTCTCTTAGAGGCCCAAGTGGGAAAGGGAGGGCTGTGGAATTGGAAGAGAGAGAGAATGGCTTGTTCTTCTCTAAGGGTTGGCAGGGTTTTGTGAAGGATCATCATTTAGAAGTTGGCAATTTCCTGGTTTTCCGTTATGATGGTGAATCAAAGTTCAAAGTCACAATCTATGACAGAAGTGCCTGTGAGAAGGATGTAGAGGTAGCCGAGAGGGGGATTGGCAGTTCAGATTCCATCGAAAGTAAAGGAAATCAAGTTAGAGTAAAAGAGGAAATTATAGACCTTGAAACTGAAAACTACAACGAAGACTATGAAAACAAAACAAGTATTGCTAACAGAAGAAATTGCAATGCCATGTCTGGAAAGAAACCTACAACTGATTATGTAGAGGAAACAACAAGTGAAAGCATCTCATTCAAATCGGATCATCGATGTTTTATGGAAACTATGAAGAGGCATTACCGATATTGCATGATGATTCCGAAGAAACTAGCCATAGCTGAAGGTCTTAATAGTGCAAGGAATGTAACGCTTCGAGATCCAAATGGGAGATTATGGCTTGTTAAACTTGTAATCCGTCCCAAGTCATCTTGCAAACGTGTGGAATTCACGACAGGTTGGGGAGAATGCTGTCAAGCGAACCAGATTTCAGTTGGGGACACTATGGTTTTTGAGTTTGTCAAGCAAAGTGCAATTAAACTTCATATTTTCGGAGAAGTGAATGGCAAGAGGTGTCCTGTGGTACTTGATGCCCCCAATGGTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

302

Amino Acids

34.21

Weight (kDa)

9.23

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 85
AclWI GGATC 5 cut(s) 46, 127, 240, 567, 668
AcsI RAATTY 1 cut(s) 740
AcuI CTGAAG 1 cut(s) 657
AfaI GTAC 1 cut(s) 879
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 5 cut(s) 49, 112, 292, 422, 553
AjnI CCWGG 1 cut(s) 258
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
AluBI AGCT 1 cut(s) 635
AluI AGCT 1 cut(s) 635
AlwI GGATC 5 cut(s) 46, 127, 240, 567, 668
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 740
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 74, 290
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 1 cut(s) 447
BccI CCATC 2 cut(s) 269, 377
BciT130I CCWGG 1 cut(s) 260
BfaI CTAG 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 85, 552, 874
BpiI GAAGAC 1 cut(s) 447
Bsa29I ATCGAT 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 490
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 565
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMI GCAATG 1 cut(s) 490
BshFI GGCC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 565
BslFI GGGAC 2 cut(s) 699, 806
BslI CCNNNNNNNGG 1 cut(s) 348
BsmFI GGGAC 2 cut(s) 699, 806
BsmI GAATGC 1 cut(s) 767
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 5 cut(s) 51, 119, 232, 559, 673
BspANI GGCC 1 cut(s) 147
BspDI ATCGAT 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 5 cut(s) 46, 127, 240, 567, 668
BsrDI GCAATG 1 cut(s) 490
BssMI GATC 5 cut(s) 51, 119, 232, 559, 673
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 174, 581
BstDEI CTNAG 3 cut(s) 72, 140, 207
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 5 cut(s) 54, 122, 235, 562, 676
BstMBI GATC 5 cut(s) 51, 119, 232, 559, 673
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 2 cut(s) 51, 673
BstYI RGATCY 2 cut(s) 51, 673
BstZ17I GTATAC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 565
BsuRI GGCC 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 565
BtsCI GGATG 1 cut(s) 334
BveI ACCTGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 146
ClaI ATCGAT 1 cut(s) 565
Csp6I GTAC 1 cut(s) 878
CviAII CATG 2 cut(s) 490, 607
CviJI RGCY 7 cut(s) 147, 167, 195, 341, 629, 635, 694
CviKI_1 RGCY 7 cut(s) 147, 167, 195, 341, 629, 635, 694
CviQI GTAC 1 cut(s) 878
DdeI CTNAG 3 cut(s) 72, 140, 207
DpnI GATC 5 cut(s) 53, 121, 234, 561, 675
DpnII GATC 5 cut(s) 51, 119, 232, 559, 673
Eam1104I CTCTTC 2 cut(s) 174, 581
EarI CTCTTC 2 cut(s) 174, 581
Eco57I CTGAAG 1 cut(s) 657
EcoRI GAATTC 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 493, 610
FaqI GGGAC 2 cut(s) 699, 806
FatI CATG 2 cut(s) 489, 606
FblI GTMKAC 1 cut(s) 85
FokI GGATG 1 cut(s) 341
FspBI CTAG 1 cut(s) 626
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 2 cut(s) 493, 610
HinfI GANTC 3 cut(s) 281, 365, 613
HphI GGTGA 2 cut(s) 74, 290
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 4 cut(s) 364, 559, 618, 848
Hpy188III TCNNGA 5 cut(s) 49, 103, 495, 671, 745
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 223, 319, 632
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 5 cut(s) 483, 606, 653, 729, 827
HpyF3I CTNAG 3 cut(s) 72, 140, 207
HpySE526I ACGT 1 cut(s) 733
Hsp92II CATG 2 cut(s) 493, 610
Kzo9I GATC 5 cut(s) 51, 119, 232, 559, 673
LweI GCATC 3 cut(s) 85, 552, 874
MaeI CTAG 1 cut(s) 626
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 3 cut(s) 62, 295, 661
MalI GATC 5 cut(s) 53, 121, 234, 561, 675
MboI GATC 5 cut(s) 51, 119, 232, 559, 673
MboII GAAGA 7 cut(s) 46, 191, 193, 452, 486, 598, 631
MflI RGATCY 2 cut(s) 51, 673
MluCI AATT 7 cut(s) 173, 253, 408, 478, 740, 828, 901
MnlI CCTC 9 cut(s) 110, 137, 156, 328, 339, 397, 517, 582, 858
MseI TTAA 4 cut(s) 645, 699, 831, 904
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 1 cut(s) 767
MvaI CCWGG 1 cut(s) 260
NdeII GATC 5 cut(s) 51, 119, 232, 559, 673
NlaIII CATG 2 cut(s) 493, 610
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 62, 295
PaqCI CACCTGC 1 cut(s) 100
PctI GAATGC 1 cut(s) 767
PfeI GAWTC 3 cut(s) 281, 365, 613
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspPI GGNCC 1 cut(s) 146
PsuI RGATCY 2 cut(s) 51, 673
RsaI GTAC 1 cut(s) 879
RsaNI GTAC 1 cut(s) 878
SaqAI TTAA 4 cut(s) 645, 699, 831, 904
Sau3AI GATC 5 cut(s) 51, 119, 232, 559, 673
Sau96I GGNCC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 260
SetI ASST 9 cut(s) 94, 339, 420, 508, 637, 643, 736, 754, 869
SfaNI GCATC 3 cut(s) 85, 552, 874
Sse9I AATT 7 cut(s) 173, 253, 408, 478, 740, 828, 901
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 1 cut(s) 258
TaiI ACGT 1 cut(s) 736
TaqI TCGA 3 cut(s) 372, 565, 670
TasI AATT 7 cut(s) 173, 253, 408, 478, 740, 828, 901
TfiI GAWTC 3 cut(s) 281, 365, 613
Tru1I TTAA 4 cut(s) 645, 699, 831, 904
Tru9I TTAA 4 cut(s) 645, 699, 831, 904
TseFI GTSAC 2 cut(s) 62, 295
Tsp45I GTSAC 2 cut(s) 62, 295
TspDTI ATGAA 4 cut(s) 32, 462, 599, 827
TspGWI ACGGA 3 cut(s) 129, 257, 701
XapI RAATTY 1 cut(s) 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 785
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.