Prupe.4G178400_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Forward (+)
10589279 .. 10591130
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178400.1

Sequence Viewer

Length: 780 bp
ATGGCGAGGAAGCCAACGAAGCCTTGTCCGAAACTACCATCATTTTTCAAGGTCCTACTGGGTGATGACTTCCCTCGGCAGCTGTGTCTACCACCTGCCTTTATGGTGCATTACAATGGACCATCTCACTGCAAATGTGCCCTTAGAGGCCCTACTGGAAAATGGTGGACAGTGGGTTTGGAAGAGAGGGAGGATGGGTTTTACTTCCGTGAGGGTTGGCGGCGTTTCTTGACAGATCATTCCTTAAAAGTTGGATACTTTTTGGTGTTTGATCATCAAGGTGGCCCAAAGTTTGATGTTACAATCTATCATCCAATGGGCTGTGACATGAGGAGAAGTATAGGCAACTCTGATAAGCCTGGAAAGAGACCCGCAACTGCTGCTGCTGTGGAAGAAACATCAACTGGATCCATCGTGTTCAGATCAGAGCATCCATGCTTCATAAGAATTCTAGGCAAGAACCAGTACCGCATGAACATCCCAAAGGAGCTAGCTGTAGCTGAAGGCCTCATTGGAAAGGAGAAGGTGATGCTTAAAGATCCAAATGGGAGATCATGGAACGTTAAGCTTAGGCTCGACAATAAGGAGCATCATGGTGGTCGTTTGCTCATGACACAAGGGTTGGTAGCATGTTGGCAAGCGAACAACATTTCGCTCGGGGATACAATCGTTTTTGAGCTTGTCAAGAGGAGTGAAATGGAGGTTCATATTTTCAGAACTGGAGCAGGAGGAAATATGCCTTCTGTTGTGCTTGATGCCTCCAGTAGTTTCAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

260

Amino Acids

29.19

Weight (kDa)

9.41

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 88
AciI CCGC 3 cut(s) 220, 372, 469
AclI AACGTT 1 cut(s) 561
AclWI GGATC 3 cut(s) 402, 415, 533
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 2 cut(s) 49, 772
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 495, 527
AluBI AGCT 6 cut(s) 82, 490, 494, 500, 568, 679
AluI AGCT 6 cut(s) 82, 490, 494, 500, 568, 679
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 3 cut(s) 402, 415, 533
Ama87I CYCGRG 1 cut(s) 656
AoxI GGCC 3 cut(s) 148, 283, 505
ApeKI GCWGC 3 cut(s) 79, 380, 383
ApoI RAATTY 1 cut(s) 447
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspS9I GGNCC 4 cut(s) 52, 119, 149, 284
AsuHPI GGTGA 2 cut(s) 74, 538
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 656
AvaII GGWCC 2 cut(s) 52, 119
BaeGI GKGCMC 1 cut(s) 142
BaeI ACNNNNGTAYC 2 cut(s) 654, 687
BamHI GGATCC 1 cut(s) 407
BbvI GCAGC 3 cut(s) 91, 367, 370
BccI CCATC 4 cut(s) 46, 130, 188, 419
BciT130I CCWGG 1 cut(s) 360
BciVI GTATCC 2 cut(s) 248, 655
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 2 cut(s) 452, 491
BfmI CTRYAG 1 cut(s) 495
BfuAI ACCTGC 1 cut(s) 103
BfuI GTATCC 2 cut(s) 248, 655
BisI GCNGC 4 cut(s) 80, 221, 381, 384
BlsI GCNGC 4 cut(s) 81, 222, 382, 385
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 2 cut(s) 52, 119
BmeT110I CYCGRG 1 cut(s) 656
BmgT120I GGNCC 4 cut(s) 52, 119, 149, 284
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 4 cut(s) 439, 519, 598, 745
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 68
BpmI CTGGAG 2 cut(s) 741, 745
Bpu10I CCTNAGC 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 74
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bse1I ACTGG 6 cut(s) 63, 160, 409, 463, 724, 762
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 4 cut(s) 199, 310, 430, 477
BseNI ACTGG 6 cut(s) 63, 160, 409, 463, 724, 762
BseRI GAGGAG 2 cut(s) 346, 703
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 3 cut(s) 91, 367, 370
BshFI GGCC 3 cut(s) 150, 285, 507
BsiHKCI CYCGRG 1 cut(s) 656
BsmAI GTCTC 1 cut(s) 361
BsnI GGCC 3 cut(s) 150, 285, 507
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 6 cut(s) 235, 271, 407, 422, 538, 551
BspACI CCGC 3 cut(s) 220, 372, 469
BspANI GGCC 3 cut(s) 150, 285, 507
BspHI TCATGA 1 cut(s) 609
BspLI GGNNCC 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 103
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 402, 415, 533
BspTNI GGTCTC 1 cut(s) 361
BsrI ACTGG 6 cut(s) 63, 160, 409, 463, 724, 762
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 6 cut(s) 235, 271, 407, 422, 538, 551
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 1 cut(s) 177
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 492, 639
BstDEI CTNAG 2 cut(s) 143, 569
BstF5I GGATG 4 cut(s) 199, 310, 430, 477
BstKTI GATC 6 cut(s) 238, 274, 410, 425, 541, 554
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 6 cut(s) 235, 271, 407, 422, 538, 551
BstMWI GCNNNNNNNGC 2 cut(s) 19, 380
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 633
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 3 cut(s) 91, 367, 370
BstX2I RGATCY 2 cut(s) 407, 538
BstYI RGATCY 2 cut(s) 407, 538
BsuI GTATCC 2 cut(s) 248, 655
BsuRI GGCC 3 cut(s) 150, 285, 507
BtsCI GGATG 4 cut(s) 199, 310, 430, 477
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 127, 177
BveI ACCTGC 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 492, 639
CciI TCATGA 1 cut(s) 609
Cfr13I GGNCC 4 cut(s) 52, 119, 149, 284
Csp6I GTAC 1 cut(s) 466
CviAII CATG 7 cut(s) 328, 435, 472, 555, 593, 610, 630
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 2 cut(s) 143, 569
DpnI GATC 6 cut(s) 237, 273, 409, 424, 540, 553
DpnII GATC 6 cut(s) 235, 271, 407, 422, 538, 551
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 52, 119
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 656
EcoO109I RGGNCCY 2 cut(s) 52, 149
EcoRI GAATTC 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 7 cut(s) 331, 438, 475, 558, 596, 613, 633
FatI CATG 7 cut(s) 327, 434, 471, 554, 592, 609, 629
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 4 cut(s) 80, 221, 381, 384
FokI GGATG 4 cut(s) 206, 297, 417, 464
Fsp4HI GCNGC 4 cut(s) 80, 221, 381, 384
FspBI CTAG 2 cut(s) 452, 491
GluI GCNGC 4 cut(s) 80, 221, 381, 384
GsuI CTGGAG 2 cut(s) 741, 745
HaeIII GGCC 3 cut(s) 150, 285, 507
Hin1II CATG 7 cut(s) 331, 438, 475, 558, 596, 613, 633
HindIII AAGCTT 1 cut(s) 566
HphI GGTGA 2 cut(s) 74, 538
Hpy166II GTNNAC 2 cut(s) 89, 168
Hpy188I TCNGA 5 cut(s) 30, 352, 422, 427, 716
Hpy188III TCNNGA 3 cut(s) 229, 610, 685
Hpy8I GTNNAC 2 cut(s) 89, 168
HpyAV CCTTC 3 cut(s) 497, 517, 750
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 2 cut(s) 109, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 380
HpyF3I CTNAG 2 cut(s) 143, 569
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 7 cut(s) 331, 438, 475, 558, 596, 613, 633
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 6 cut(s) 235, 271, 407, 422, 538, 551
LmnI GCTCC 3 cut(s) 487, 586, 722
Lsp1109I GCAGC 3 cut(s) 91, 367, 370
LweI GCATC 4 cut(s) 439, 519, 598, 745
MaeI CTAG 2 cut(s) 452, 491
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 2 cut(s) 298, 323
MalI GATC 6 cut(s) 237, 273, 409, 424, 540, 553
MboI GATC 6 cut(s) 235, 271, 407, 422, 538, 551
MboII GAAGA 2 cut(s) 194, 404
MflI RGATCY 2 cut(s) 407, 538
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 447
MmeI TCCRAC 1 cut(s) 232
MseI TTAA 4 cut(s) 245, 534, 564, 778
MslI CAYNNNNRTG 3 cut(s) 114, 279, 594
MspA1I CMGCKG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 19, 380
NdeII GATC 6 cut(s) 235, 271, 407, 422, 538, 551
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 7 cut(s) 331, 438, 475, 558, 596, 613, 633
NlaIV GGNNCC 1 cut(s) 409
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 1 cut(s) 633
PagI TCATGA 1 cut(s) 609
PaqCI CACCTGC 1 cut(s) 103
PceI AGGCCT 1 cut(s) 507
PkrI GCNGC 4 cut(s) 81, 222, 382, 385
PpuMI RGGWCCY 1 cut(s) 52
Psp1406I AACGTT 1 cut(s) 561
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 409
PspPI GGNCC 4 cut(s) 52, 119, 149, 284
PspPPI RGGWCCY 1 cut(s) 52
PsuI RGATCY 2 cut(s) 407, 538
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 3 cut(s) 114, 279, 594
SaqAI TTAA 4 cut(s) 245, 534, 564, 778
SatI GCNGC 4 cut(s) 80, 221, 381, 384
Sau3AI GATC 6 cut(s) 235, 271, 407, 422, 538, 551
Sau96I GGNCC 4 cut(s) 52, 119, 149, 284
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 4 cut(s) 439, 519, 598, 745
SfcI CTRYAG 1 cut(s) 495
SinI GGWCC 2 cut(s) 52, 119
SmiMI CAYNNNNRTG 3 cut(s) 114, 279, 594
Sse9I AATT 1 cut(s) 447
SseBI AGGCCT 1 cut(s) 507
SsiI CCGC 3 cut(s) 220, 372, 469
SspMI CTAG 2 cut(s) 452, 491
StuI AGGCCT 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 564
TaqI TCGA 1 cut(s) 576
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 4 cut(s) 245, 534, 564, 778
Tru9I TTAA 4 cut(s) 245, 534, 564, 778
TscAI CASTG 2 cut(s) 134, 177
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 3 cut(s) 79, 380, 383
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 430, 488, 695
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 134, 177
VpaK11BI GGWCC 2 cut(s) 52, 119
XapI RAATTY 1 cut(s) 447
XceI RCATGY 1 cut(s) 633
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 2 cut(s) 452, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.