RLG00000011713

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000210
Physical Location & Seq
Forward (+)
12118928 .. 12121083
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011713

Sequence Viewer

Length: 777 bp
ATGGCTAGGAAGCAGACTGAGCATCCAGCAAGAAGAGAAGCATTTTTCAAGGCCCTTATGGGTGATTTTTCTCAGCAACTGCGTATACCATCAGCGTTTATCAAGAACTTGAACAGACGCGCACTGCACATATGTCGTCTTAAAGGCCCTAGTGGACAATGTTGGGTTGTGGAATTGGAAAAGAGAGGCAATCGATTGTTTTTCCATAAGGGTTGGGAGGAATTTGTGAAGCATCATCCTCTACAAGTTGGGGATTTTCTGATTTTCAGTTATGATGGTGTGTCAATGTTTGATGTGACAATATATGGCAAAACTTTCTGTGAGAAGAATGTAAAAGCAGCCAAGAGGAGAAGTGACAGTAATGGTATTGCTGCCAAAAGAAGTGGTAAGTTGCCAAGGAGAAGTGACAGTCATGCTGACAAAAGAAGGGCAGTTGACGATGTAGAAGAAACTTCTCTTCAACCCATTCCATTCCAATCAAAGAACTCTTTTATCTGTAGAGTTTTGAAGGCACGTACATTGTATGAAGTGTATATTCCGACGGAAGTAATCATAGCGGAAGGTTTAAAGGCTGGGATGGCCATAAAGATTCAAGATACATTTGGGATGTCATGGCATCTTAGACTACGTGGTAGCCATGATCATCGTGTGCTGATGAGGTCGGGCTTGTCAAAGATATGCAAAGCAAACAAAACTTCACATGGGGACACTGTGATCTTTGAGTTTGTCAAGCCAACAGTAGTGCAACTTCATATTATCAGAGCAGGAGCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

259

Amino Acids

29.51

Weight (kDa)

10.04

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 16 - 99 1.5e-15 B3 DNA binding domain
B3 PF02362 177 - 252 1.8e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 85
AccII CGCG 1 cut(s) 120
AciI CCGC 1 cut(s) 557
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 2 cut(s) 517, 773
AgsI TTSAA 5 cut(s) 49, 112, 461, 508, 593
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 3 cut(s) 51, 145, 579
ApeKI GCWGC 2 cut(s) 338, 371
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 52, 146
AsuHPI GGTGA 1 cut(s) 74
BalI TGGCCA 1 cut(s) 581
BarI GAAGNNNNNNTAC 2 cut(s) 732, 764
BbvI GCAGC 2 cut(s) 350, 358
BccI CCATC 3 cut(s) 97, 269, 571
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BclI TGATCA 1 cut(s) 640
BfaI CTAG 3 cut(s) 6, 150, 775
BfmI CTRYAG 1 cut(s) 496
BisI GCNGC 2 cut(s) 339, 372
BlsI GCNGC 2 cut(s) 340, 373
BmgT120I GGNCC 2 cut(s) 52, 146
BmsI GCATC 3 cut(s) 31, 241, 625
Bsa29I ATCGAT 1 cut(s) 193
BsaAI YACGTR 2 cut(s) 515, 629
BsaJI CCNNGG 1 cut(s) 395
BseCI ATCGAT 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 4 cut(s) 22, 235, 582, 612
BseMII CTCAG 2 cut(s) 9, 86
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 350, 358
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 3 cut(s) 53, 147, 581
BshVI ATCGAT 1 cut(s) 193
BslFI GGGAC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 719
BsnI GGCC 3 cut(s) 53, 147, 581
Bsp143I GATC 2 cut(s) 640, 714
BspACI CCGC 1 cut(s) 557
BspANI GGCC 3 cut(s) 53, 147, 581
BspCNI CTCAG 2 cut(s) 10, 85
BspDI ATCGAT 1 cut(s) 193
BspFNI CGCG 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 2 cut(s) 640, 714
BssNAI GTATAC 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 395
Bst1107I GTATAC 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 359, 410, 712, 739
Bst6I CTCTTC 2 cut(s) 28, 462
BstBAI YACGTR 2 cut(s) 515, 629
BstDEI CTNAG 3 cut(s) 18, 72, 620
BstF5I GGATG 4 cut(s) 22, 235, 582, 612
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 643, 717
BstMBI GATC 2 cut(s) 640, 714
BstMWI GCNNNNNNNGC 2 cut(s) 19, 578
BstSFI CTRYAG 1 cut(s) 496
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 350, 358
BstZ17I GTATAC 1 cut(s) 86
Bsu15I ATCGAT 1 cut(s) 193
BsuRI GGCC 3 cut(s) 53, 147, 581
BsuTUI ATCGAT 1 cut(s) 193
BtsCI GGATG 4 cut(s) 22, 235, 582, 612
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 2 cut(s) 122, 708
CaiI CAGNNNCTG 1 cut(s) 79
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 52, 146
ClaI ATCGAT 1 cut(s) 193
CseI GACGC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 516, 772
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 4 cut(s) 413, 612, 638, 701
CviJI RGCY 9 cut(s) 5, 53, 147, 341, 572, 581, 636, 666, 733
CviKI_1 RGCY 9 cut(s) 5, 53, 147, 341, 572, 581, 636, 666, 733
CviQI GTAC 2 cut(s) 516, 772
DdeI CTNAG 3 cut(s) 18, 72, 620
DpnI GATC 2 cut(s) 642, 716
DpnII GATC 2 cut(s) 640, 714
DraI TTTAAA 1 cut(s) 567
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 28, 462
EarI CTCTTC 2 cut(s) 28, 462
Eco130I CCWWGG 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 52, 146
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 4 cut(s) 416, 615, 641, 704
FaqI GGGAC 1 cut(s) 719
FatI CATG 4 cut(s) 412, 611, 637, 700
FauNDI CATATG 1 cut(s) 131
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 339, 372
FokI GGATG 4 cut(s) 9, 222, 589, 619
Fsp4HI GCNGC 2 cut(s) 339, 372
FspBI CTAG 3 cut(s) 6, 150, 775
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 339, 372
GsaI CCCAGC 1 cut(s) 576
HaeIII GGCC 3 cut(s) 53, 147, 581
HgaI GACGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 416, 615, 641, 704
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 1 cut(s) 589
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 86, 155, 436
Hpy188I TCNGA 3 cut(s) 261, 540, 761
Hpy188III TCNNGA 2 cut(s) 103, 593
Hpy8I GTNNAC 3 cut(s) 86, 155, 436
Hpy99I CGWCG 1 cut(s) 544
HpyAV CCTTC 3 cut(s) 420, 502, 554
HpyCH4III ACNGT 4 cut(s) 359, 410, 712, 739
HpyCH4IV ACGT 2 cut(s) 514, 628
HpyCH4V TGCA 3 cut(s) 127, 681, 745
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 578
HpyF3I CTNAG 3 cut(s) 18, 72, 620
HpySE526I ACGT 2 cut(s) 514, 628
Hsp92II CATG 4 cut(s) 416, 615, 641, 704
HspAI GCGC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 2 cut(s) 640, 714
LmnI GCTCC 1 cut(s) 767
LpnPI CCDG 3 cut(s) 39, 558, 750
Lsp1109I GCAGC 2 cut(s) 350, 358
LweI GCATC 3 cut(s) 31, 241, 625
MaeI CTAG 3 cut(s) 6, 150, 775
MaeII ACGT 2 cut(s) 514, 628
MaeIII GTNAC 3 cut(s) 295, 353, 404
MalI GATC 2 cut(s) 642, 716
MboI GATC 2 cut(s) 640, 714
MboII GAAGA 4 cut(s) 45, 337, 449, 458
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 2 cut(s) 173, 221
MluNI TGGCCA 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 5 cut(s) 179, 211, 249, 339, 651
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 2 cut(s) 141, 566
Msp20I TGGCCA 1 cut(s) 581
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 19, 578
NdeI CATATG 1 cut(s) 131
NdeII GATC 2 cut(s) 640, 714
NlaIII CATG 4 cut(s) 416, 615, 641, 704
NmuCI GTSAC 3 cut(s) 295, 353, 404
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 2 cut(s) 340, 373
Ppu21I YACGTR 2 cut(s) 515, 629
PspFI CCCAGC 1 cut(s) 572
PspPI GGNCC 2 cut(s) 52, 146
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 2 cut(s) 517, 773
RsaNI GTAC 2 cut(s) 516, 772
SaqAI TTAA 2 cut(s) 141, 566
SatI GCNGC 2 cut(s) 339, 372
Sau3AI GATC 2 cut(s) 640, 714
Sau96I GGNCC 2 cut(s) 52, 146
SetI ASST 4 cut(s) 517, 565, 631, 662
SfaNI GCATC 3 cut(s) 31, 241, 625
SfcI CTRYAG 1 cut(s) 496
Sse9I AATT 2 cut(s) 173, 221
SsiI CCGC 1 cut(s) 557
SspMI CTAG 3 cut(s) 6, 150, 775
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 4 cut(s) 359, 410, 712, 739
TaiI ACGT 2 cut(s) 517, 631
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 173, 221
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 2 cut(s) 141, 566
Tru9I TTAA 2 cut(s) 141, 566
TscAI CASTG 2 cut(s) 129, 715
TseFI GTSAC 3 cut(s) 295, 353, 404
TseI GCWGC 2 cut(s) 338, 371
Tsp45I GTSAC 3 cut(s) 295, 353, 404
TspDTI ATGAA 2 cut(s) 540, 740
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 2 cut(s) 129, 715
XapI RAATTY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 3 cut(s) 6, 150, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.