Prupe.4G178500_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Forward (+)
10591408 .. 10592415
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G178500.1

Sequence Viewer

Length: 726 bp
ATGAACTATGTCAATGGACGATTGCCTCCAACATGTACTCTTAGAGGTCCTAGTGGAGAATGTTGGACAGGTTGGCAGGGTTTTGTGAAGGATCATTCTTTGGAAATTGCAAATTTTTTGGTTTTTGATTATGGTGGCAAATCCAAGTTTGATGTCACAATGTATGATCCAATTGGCACTGAGAAGGAGTTAGAACCAGCCGAGAAGAGAAGGGGAAATCGAGCTCAATTGGAGGAGGAGATCATTGAGCTTGAAACTGAAGAACCCGACGAAGAGAGTGAAGAAGATGCTCGTATATCAAACATAAGAAAGTGCAAGTCTGGAAAGAGGATTGCAACTGATGGTGGGAAAGAAAAATCAAATGCACATGTTGCGTTCAGATCGAAGCATCCATGCTTCATTGGAACTATGACGAAGAACCACTATCGCCTAAATATCCCAAAGGCGCTGGCTGTAGCTAAAGGTCTCATTAGAAAGAAGAGTGTAGAGGTTGAAGATCCAAATGGGATATCATGGGATGTTAAAGTAAGGCTCCATGGAAAGGAACATCGCGGTGGTCGTTTGTTCATGACAAAAGGGTTGTCAAAATGTTTTCATGCAAACAACATTTCACTTGGGGACACACTGGTTTTTGAGCTTTTCAACACGAAGAGCGGTGGAATGAAAATATATATTTTCAGAGGAAACAGTAATGTTTTACTGGATGCCTCCAATGTCGAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

242

Amino Acids

27.14

Weight (kDa)

8.5

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 654
AccII CGCG 1 cut(s) 552
AciI CCGC 2 cut(s) 552, 654
AclWI GGATC 3 cut(s) 99, 161, 491
AcsI RAATTY 1 cut(s) 112
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 541
AflIII ACRYGT 2 cut(s) 32, 367
AgsI TTSAA 3 cut(s) 254, 494, 643
AluBI AGCT 4 cut(s) 224, 250, 458, 637
AluI AGCT 4 cut(s) 224, 250, 458, 637
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 3 cut(s) 99, 161, 491
ApoI RAATTY 1 cut(s) 112
ArsI GACNNNNNNTTYG 2 cut(s) 566, 598
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 226
BccI CCATC 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 453
BfoI RGCGCY 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 533
BmsI GCATC 3 cut(s) 277, 397, 694
BsaI GGTCTC 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 535
Bsc4I CCNNNNNNNGG 1 cut(s) 541
Bse1I ACTGG 2 cut(s) 630, 705
BseDI CCNNGG 1 cut(s) 535
BseGI GGATG 3 cut(s) 388, 523, 709
BseLI CCNNNNNNNGG 1 cut(s) 541
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 630, 705
BseRI GAGGAG 2 cut(s) 248, 251
Bsh1236I CGCG 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 226
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 632
Bso31I GGTCTC 1 cut(s) 470
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 5 cut(s) 91, 166, 240, 380, 496
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 2 cut(s) 552, 654
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 552
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 533
BspPI GGATC 3 cut(s) 99, 161, 491
BspQI GCTCTTC 1 cut(s) 644
BspTNI GGTCTC 1 cut(s) 470
BsrBI CCGCTC 1 cut(s) 654
BsrI ACTGG 2 cut(s) 630, 705
BssECI CCNNGG 1 cut(s) 535
BssMI GATC 5 cut(s) 91, 166, 240, 380, 496
BssT1I CCWWGG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 689
Bst6I CTCTTC 4 cut(s) 200, 267, 473, 644
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 41, 180
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 3 cut(s) 388, 523, 709
BstFNI CGCG 1 cut(s) 552
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 5 cut(s) 94, 169, 243, 383, 499
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 5 cut(s) 91, 166, 240, 380, 496
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNSI RCATGY 2 cut(s) 36, 371
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 533
BtsCI GGATG 3 cut(s) 388, 523, 709
BtsIMutI CAGTG 2 cut(s) 177, 623
Cac8I GCNNGC 1 cut(s) 450
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 36
CviAII CATG 7 cut(s) 33, 368, 393, 513, 536, 568, 596
CviJI RGCY 7 cut(s) 200, 224, 250, 452, 458, 532, 637
CviKI_1 RGCY 7 cut(s) 200, 224, 250, 452, 458, 532, 637
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 2 cut(s) 41, 180
DpnI GATC 5 cut(s) 93, 168, 242, 382, 498
DpnII GATC 5 cut(s) 91, 166, 240, 380, 496
Eam1104I CTCTTC 4 cut(s) 200, 267, 473, 644
EarI CTCTTC 4 cut(s) 200, 267, 473, 644
Ecl136II GAGCTC 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 47
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 7 cut(s) 36, 371, 396, 516, 539, 571, 599
FaqI GGGAC 1 cut(s) 632
FatI CATG 7 cut(s) 32, 367, 392, 512, 535, 567, 595
FokI GGATG 3 cut(s) 375, 530, 716
FriOI GRGCYC 1 cut(s) 226
FspBI CTAG 1 cut(s) 51
GlaI GCGC 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 449
HhaI GCGC 1 cut(s) 448
Hin1II CATG 7 cut(s) 36, 371, 396, 516, 539, 571, 599
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
Hpy188I TCNGA 2 cut(s) 380, 680
Hpy188III TCNNGA 2 cut(s) 321, 568
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 3 cut(s) 82, 178, 204
HpyCH4III ACNGT 1 cut(s) 689
HpyCH4V TGCA 5 cut(s) 110, 315, 335, 365, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 2 cut(s) 41, 180
Hsp92II CATG 7 cut(s) 36, 371, 396, 516, 539, 571, 599
HspAI GCGC 1 cut(s) 446
Kzo9I GATC 5 cut(s) 91, 166, 240, 380, 496
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 1 cut(s) 537
LpnPI CCDG 7 cut(s) 54, 62, 210, 306, 434, 611, 686
LweI GCATC 3 cut(s) 277, 397, 694
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 154
MalI GATC 5 cut(s) 93, 168, 242, 382, 498
MbiI CCGCTC 1 cut(s) 654
MboI GATC 5 cut(s) 91, 166, 240, 380, 496
MboII GAAGA 9 cut(s) 217, 272, 284, 293, 296, 427, 490, 506, 661
MfeI CAATTG 2 cut(s) 171, 227
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 4 cut(s) 105, 112, 171, 227
MmeI TCCRAC 2 cut(s) 44, 53
MnlI CCTC 8 cut(s) 36, 38, 226, 229, 321, 481, 674, 718
MseI TTAA 2 cut(s) 522, 724
MslI CAYNNNNRTG 1 cut(s) 552
MunI CAATTG 2 cut(s) 171, 227
MvnI CGCG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 371
NcoI CCATGG 1 cut(s) 535
NdeII GATC 5 cut(s) 91, 166, 240, 380, 496
NlaIII CATG 7 cut(s) 36, 371, 396, 516, 539, 571, 599
NlaIV GGNNCC 1 cut(s) 533
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 2 cut(s) 36, 371
PagI TCATGA 1 cut(s) 567
PciI ACATGT 2 cut(s) 32, 367
PciSI GCTCTTC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 1 cut(s) 556
PpuMI RGGWCCY 1 cut(s) 47
PscI ACATGT 2 cut(s) 32, 367
Psp124BI GAGCTC 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 533
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PsuI RGATCY 1 cut(s) 496
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 2 cut(s) 522, 724
Sau3AI GATC 5 cut(s) 91, 166, 240, 380, 496
Sau96I GGNCC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 226
SetI ASST 8 cut(s) 49, 73, 226, 252, 460, 466, 492, 639
SfaNI GCATC 3 cut(s) 277, 397, 694
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 552
Sse9I AATT 4 cut(s) 105, 112, 171, 227
SsiI CCGC 2 cut(s) 552, 654
SspI AATATT 1 cut(s) 722
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 226
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 1 cut(s) 689
TaqI TCGA 3 cut(s) 220, 383, 717
TasI AATT 4 cut(s) 105, 112, 171, 227
TatI WGTACW 1 cut(s) 35
Tru1I TTAA 2 cut(s) 522, 724
Tru9I TTAA 2 cut(s) 522, 724
TscAI CASTG 2 cut(s) 184, 630
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 5 cut(s) 17, 388, 556, 584, 677
TspRI CASTG 2 cut(s) 184, 630
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 112
XceI RCATGY 2 cut(s) 36, 371
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.