Rmu_sc0003503.1_g000005

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003503.1
OG0000210
Physical Location & Seq
Reverse (-)
19729 .. 20807
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003503.1_g000005.1.cds

Sequence Viewer

Length: 669 bp
atgccaacagcttttgtcaacgacttcaatggaccagcactatgcaaacttcgaggccctaatggaaaatgctgggatgtaaaattggaagagaaaaacaatgatcttttcttccataaaggctggaagaaatttgtgaaggataactatttggaggaaggagactttctggttttcaattatgatggcaattcattgttcagtgtgacaatttatgatgaaagtgcatgtgaaatggacatggaagaagccaagagaaagagaagtactggcggttttggtcaaatgagggattatgtcatgcctggggagacaagactcagattgattgagttcaaatcagagcatctttgctttaagagaactatggagggtcacagactgtatcagctgaacattcctataataatagccagggctaagggtctcatgagcaagcggactatagagcttcgggatccaagcaacagatcatggcctgttgcagtgacccccatggaagatggtcgtacacttatgaacaaaggctggtgtcattgttgcaaggcgaaccagattaagaaagggaacaccgttgtttttgagtttgtgaagggacatgtgaagcttcacatcattagagatgagggatatgaagtgatgctcacaggtcctaatatcgtgtattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

222

Amino Acids

25.72

Weight (kDa)

8.76

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 273, 439
AclWI GGATC 2 cut(s) 452, 465
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 2 cut(s) 268, 511
AflIII ACRYGT 1 cut(s) 598
AgsI TTSAA 3 cut(s) 28, 178, 337
AjnI CCWGG 2 cut(s) 304, 413
AluBI AGCT 4 cut(s) 11, 391, 451, 607
AluI AGCT 4 cut(s) 11, 391, 451, 607
Alw26I GTCTC 3 cut(s) 156, 305, 431
AlwI GGATC 2 cut(s) 452, 465
AoxI GGCC 2 cut(s) 55, 476
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 32, 56, 650
AvaII GGWCC 2 cut(s) 32, 650
BamHI GGATCC 1 cut(s) 457
BccI CCATC 2 cut(s) 179, 497
BciT130I CCWGG 2 cut(s) 306, 415
BcoDI GTCTC 3 cut(s) 156, 305, 431
BfmI CTRYAG 1 cut(s) 444
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 2 cut(s) 306, 415
Bme18I GGWCC 2 cut(s) 32, 650
BmgT120I GGNCC 3 cut(s) 32, 56, 650
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 2 cut(s) 306, 415
BmsI GCATC 2 cut(s) 355, 630
Bpu10I CCTNAGC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 305, 414, 495
Bse1I ACTGG 1 cut(s) 274
BseBI CCWGG 2 cut(s) 306, 415
BseDI CCNNGG 3 cut(s) 305, 414, 495
BseGI GGATG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 274
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 2 cut(s) 57, 478
BslFI GGGAC 1 cut(s) 609
BsmAI GTCTC 3 cut(s) 156, 305, 431
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 2 cut(s) 57, 478
Bso31I GGTCTC 1 cut(s) 431
Bsp143I GATC 3 cut(s) 103, 457, 470
Bsp19I CCATGG 1 cut(s) 495
BspACI CCGC 2 cut(s) 273, 439
BspANI GGCC 2 cut(s) 57, 478
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 459
BspPI GGATC 2 cut(s) 452, 465
BspTNI GGTCTC 1 cut(s) 431
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 3 cut(s) 305, 414, 495
BssMI GATC 3 cut(s) 103, 457, 470
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 306, 415
Bst4CI ACNGT 2 cut(s) 384, 574
Bst6I CTCTTC 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 437
BstDEI CTNAG 2 cut(s) 320, 420
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 3 cut(s) 106, 460, 473
BstMAI GTCTC 3 cut(s) 156, 305, 431
BstMBI GATC 3 cut(s) 103, 457, 470
BstNI CCWGG 2 cut(s) 306, 415
BstNSI RCATGY 2 cut(s) 231, 602
BstSCI CCNGG 2 cut(s) 304, 413
BstSFI CTRYAG 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 2 cut(s) 57, 478
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 208, 492
Cac8I GCNNGC 1 cut(s) 437
CciI TCATGA 1 cut(s) 429
Cfr13I GGNCC 3 cut(s) 32, 56, 650
Csp6I GTAC 2 cut(s) 267, 510
CviAII CATG 7 cut(s) 228, 241, 301, 430, 474, 496, 599
CviQI GTAC 2 cut(s) 267, 510
DdeI CTNAG 2 cut(s) 320, 420
DpnI GATC 3 cut(s) 105, 459, 472
DpnII GATC 3 cut(s) 103, 457, 470
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 495
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 32, 650
EcoO109I RGGNCCY 2 cut(s) 56, 650
EcoRII CCWGG 2 cut(s) 304, 413
EcoT14I CCWWGG 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 7 cut(s) 231, 244, 304, 433, 477, 499, 602
FaqI GGGAC 1 cut(s) 609
FatI CATG 7 cut(s) 227, 240, 300, 429, 473, 495, 598
FokI GGATG 1 cut(s) 89
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 2 cut(s) 57, 478
Hin1II CATG 7 cut(s) 231, 244, 304, 433, 477, 499, 602
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 1 cut(s) 318
Hpy166II GTNNAC 2 cut(s) 19, 512
Hpy188I TCNGA 2 cut(s) 323, 343
Hpy188III TCNNGA 2 cut(s) 430, 455
Hpy8I GTNNAC 2 cut(s) 19, 512
HpyAV CCTTC 3 cut(s) 133, 152, 586
HpyCH4III ACNGT 2 cut(s) 384, 574
HpyCH4V TGCA 4 cut(s) 45, 227, 485, 543
HpyF3I CTNAG 2 cut(s) 320, 420
Hsp92II CATG 7 cut(s) 231, 244, 304, 433, 477, 499, 602
Kzo9I GATC 3 cut(s) 103, 457, 470
LweI GCATC 2 cut(s) 355, 630
MaeIII GTNAC 3 cut(s) 205, 374, 487
MalI GATC 3 cut(s) 105, 459, 472
MboI GATC 3 cut(s) 103, 457, 470
MboII GAAGA 5 cut(s) 101, 103, 139, 257, 512
MflI RGATCY 1 cut(s) 457
MluCI AATT 5 cut(s) 83, 131, 178, 190, 210
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 5 cut(s) 47, 148, 282, 364, 619
MseI TTAA 2 cut(s) 357, 558
MspA1I CMGCKG 1 cut(s) 391
MspR9I CCNGG 2 cut(s) 306, 415
MvaI CCWGG 2 cut(s) 306, 415
NcoI CCATGG 1 cut(s) 495
NdeII GATC 3 cut(s) 103, 457, 470
NlaIII CATG 7 cut(s) 231, 244, 304, 433, 477, 499, 602
NlaIV GGNNCC 1 cut(s) 459
NmuCI GTSAC 3 cut(s) 205, 374, 487
NspI RCATGY 2 cut(s) 231, 602
PagI TCATGA 1 cut(s) 429
PciI ACATGT 1 cut(s) 598
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 650
PscI ACATGT 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 2 cut(s) 304, 413
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 2 cut(s) 304, 413
PspN4I GGNNCC 1 cut(s) 459
PspPI GGNCC 3 cut(s) 32, 56, 650
PspPPI RGGWCCY 1 cut(s) 650
PsuI RGATCY 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 391
RsaI GTAC 2 cut(s) 268, 511
RsaNI GTAC 2 cut(s) 267, 510
SaqAI TTAA 2 cut(s) 357, 558
Sau3AI GATC 3 cut(s) 103, 457, 470
Sau96I GGNCC 3 cut(s) 32, 56, 650
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 1 cut(s) 312
ScrFI CCNGG 2 cut(s) 306, 415
SetI ASST 5 cut(s) 13, 393, 453, 609, 652
SfaNI GCATC 2 cut(s) 355, 630
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 2 cut(s) 32, 650
Sse9I AATT 5 cut(s) 83, 131, 178, 190, 210
SsiI CCGC 2 cut(s) 273, 439
StyD4I CCNGG 2 cut(s) 304, 413
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 2 cut(s) 384, 574
TaqI TCGA 1 cut(s) 52
TasI AATT 5 cut(s) 83, 131, 178, 190, 210
TatI WGTACW 1 cut(s) 266
Tru1I TTAA 2 cut(s) 357, 558
Tru9I TTAA 2 cut(s) 357, 558
TscAI CASTG 2 cut(s) 208, 492
TseFI GTSAC 3 cut(s) 205, 374, 487
Tsp45I GTSAC 3 cut(s) 205, 374, 487
TspDTI ATGAA 4 cut(s) 183, 234, 533, 648
TspRI CASTG 2 cut(s) 208, 492
VpaK11BI GGWCC 2 cut(s) 32, 650
XapI RAATTY 1 cut(s) 131
XceI RCATGY 2 cut(s) 231, 602
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.