Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

27762084 .. 27764188

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTGTGGCCTTAGAGGCCCTTGTGGAAACTTGTGGGCTGTGAATTTAAAAGAGATCAAGGATCGCGTGGTTTTCCATAAGGGTTGGCAGAGTTTTGCAAAGCATCATTTTCTGGAAGTTGGGGATTTCTTGACTTTCACTAAAGATGATGGTTCAATTTTTGATGTCATAATTTATGATAAAAGCTACTGTGAGAAGAATGTTGAAACAGCCAAGAGCAGGATTGGCAATGTTGTGGACAGAACAATTAACAACCACATCATTTTAGGAAAGAGACCTGCACTTGATCTTGTGGAAGAAACATCTATTGGATCCATCTCTTTCAATCCGGAGAATCCATTTTTTACTACTATTTTTACGAGGTATACTCGATATGACCTGAGAATTCCAAGCAAAGTAGTCATAGCTGCAGGTCTTATGAACAATAAAACTATAATGCTTCAAGATCCAACTGGGAGGTCATGGTCTATTAAACTCAACGAAACACTAAGGGGTCAAATGCGTATGGAAGGCTGGTGTAATGTTTGTAAAGAGAACCAAATTTCATTTGGAGACACCCTTGTTATTGAGGTAGTCAAGCATTCTGTACTTCAACTCCATGTTTATAAAGTAGGAGCAGCCCTGGATGTCGAAACTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

214

Amino Acids

24.3

Weight (kDa)

8.24

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	4 - 54	3.3e-09	B3 DNA binding domain
B3	PF02362	122 - 201	7.4e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
Acc36I	ACCTGC	2 cut(s)	286, 401
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	328
AclWI	GGATC	4 cut(s)	69, 306, 319, 440
AcsI	RAATTY	3 cut(s)	43, 384, 540
AfaI	GTAC	1 cut(s)	588
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	5 cut(s)	156, 206, 325, 443, 593
AjnI	CCWGG	1 cut(s)	621
AjuI	GAANNNNNNNTTGG	2 cut(s)	291, 323
AluBI	AGCT	3 cut(s)	186, 407, 642
AluI	AGCT	3 cut(s)	186, 407, 642
Alw26I	GTCTC	2 cut(s)	268, 546
AlwI	GGATC	4 cut(s)	69, 306, 319, 440
Aor13HI	TCCGGA	1 cut(s)	328
AoxI	GGCC	2 cut(s)	7, 16
ApeKI	GCWGC	2 cut(s)	407, 617
ApoI	RAATTY	3 cut(s)	43, 384, 540
AspS9I	GGNCC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	394, 629
BccI	CCATC	2 cut(s)	143, 323
BciT130I	CCWGG	1 cut(s)	623
BcoDI	GTCTC	2 cut(s)	268, 546
BfaI	CTAG	1 cut(s)	643
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	2 cut(s)	286, 401
BglI	GCCNNNNNGGC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	408, 618
BlsI	GCNGC	2 cut(s)	409, 619
Bme1390I	CCNGG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	17
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	352, 384
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	621
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	394, 629
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	9, 18
BsiSI	CCGG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	268, 546
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	2 cut(s)	9, 18
Bso31I	GGTCTC	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	54, 61, 286, 311, 445
BspANI	GGCC	2 cut(s)	9, 18
BspCNI	CTCAG	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	313
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	2 cut(s)	286, 401
BspPI	GGATC	4 cut(s)	69, 306, 319, 440
BspTNI	GGTCTC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	5 cut(s)	54, 61, 286, 311, 445
BssNAI	GTATAC	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	1 cut(s)	191
BstDEI	CTNAG	3 cut(s)	11, 380, 488
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	5 cut(s)	57, 64, 289, 314, 448
BstMAI	GTCTC	2 cut(s)	268, 546
BstMBI	GATC	5 cut(s)	54, 61, 286, 311, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 225
BstNI	CCWGG	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	621
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	394, 629
BstX2I	RGATCY	2 cut(s)	311, 445
BstYI	RGATCY	2 cut(s)	311, 445
BstZ17I	GTATAC	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	9, 18
BtsCI	GGATG	1 cut(s)	631
BveI	ACCTGC	2 cut(s)	286, 401
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	2 cut(s)	462, 599
CviJI	RGCY	9 cut(s)	9, 18, 38, 186, 212, 407, 513, 620, 642
CviKI_1	RGCY	9 cut(s)	9, 18, 38, 186, 212, 407, 513, 620, 642
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	3 cut(s)	11, 380, 488
DpnI	GATC	5 cut(s)	56, 63, 288, 313, 447
DpnII	GATC	5 cut(s)	54, 61, 286, 311, 445
DraI	TTTAAA	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	268
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	621
FaeI	CATG	2 cut(s)	465, 602
FatI	CATG	2 cut(s)	461, 598
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	408, 618
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	2 cut(s)	408, 618
FspBI	CTAG	1 cut(s)	643
GluI	GCNGC	2 cut(s)	408, 618
HaeIII	GGCC	2 cut(s)	9, 18
HapII	CCGG	1 cut(s)	329
Hin1II	CATG	2 cut(s)	465, 602
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	238, 366
Hpy188III	TCNNGA	4 cut(s)	113, 130, 329, 443
Hpy8I	GTNNAC	2 cut(s)	238, 366
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	98, 281, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 225
HpyF3I	CTNAG	3 cut(s)	11, 380, 488
Hsp92II	CATG	2 cut(s)	465, 602
Kpn2I	TCCGGA	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	54, 61, 286, 311, 445
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	2 cut(s)	394, 629
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	643
MalI	GATC	5 cut(s)	56, 63, 288, 313, 447
MboI	GATC	5 cut(s)	54, 61, 286, 311, 445
MboII	GAAGA	2 cut(s)	208, 308
MflI	RGATCY	2 cut(s)	311, 445
MluCI	AATT	6 cut(s)	43, 156, 171, 246, 384, 540
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	4 cut(s)	8, 354, 450, 562
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	3 cut(s)	47, 249, 471
MspI	CCGG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	623
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	623
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	15, 225
NdeII	GATC	5 cut(s)	54, 61, 286, 311, 445
NlaIII	CATG	2 cut(s)	465, 602
NlaIV	GGNNCC	1 cut(s)	313
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	409, 619
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	2 cut(s)	311, 445
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SaqAI	TTAA	3 cut(s)	47, 249, 471
SatI	GCNGC	2 cut(s)	408, 618
Sau3AI	GATC	5 cut(s)	54, 61, 286, 311, 445
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	623
SetI	ASST	9 cut(s)	188, 280, 365, 381, 409, 415, 461, 573, 644
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	408
SfiI	GGCCNNNNNGGCC	1 cut(s)	15
Sse9I	AATT	6 cut(s)	43, 156, 171, 246, 384, 540
SspMI	CTAG	1 cut(s)	643
StyD4I	CCNGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	370, 630
TasI	AATT	6 cut(s)	43, 156, 171, 246, 384, 540
TatI	WGTACW	1 cut(s)	586
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	3 cut(s)	47, 249, 471
Tru9I	TTAA	3 cut(s)	47, 249, 471
TseI	GCWGC	2 cut(s)	407, 617
TspDTI	ATGAA	2 cut(s)	434, 534
XapI	RAATTY	3 cut(s)	43, 384, 540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	365
XspI	CTAG	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.