Rh5CG257100

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000210
Physical Location & Seq
Forward (+)
27300372 .. 27300665
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG257100.1

Sequence Viewer

Length: 294 bp
ATGGGGGGACGTGTTAAAGGACTTACGAGTAAGAAGACTGAGAAGATTCAAGATCCCACTGGGAGATCATGGCTCGTTAAACTTCCTCTAGAAAGGTATGAATCCAAAGGGTACAGATCTAGTTATGATCGCTATCACATGGGAAGAGGTTGGAAAGATTGTCGCAAAGCCAACCAGATATATCGCATGGGGACAACCTCATTTTTTGAGTTTGTCAAGAACAGCATAGTGCAACTTCATATCTTCAAGAATTGGCATTCCGTGGTACTTGATGCTCCCAACTTCAAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

97

Amino Acids

11.4

Weight (kDa)

10.11

Isoelectric Point (pI)

23.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 47
AfaI GTAC 2 cut(s) 113, 267
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 3 cut(s) 50, 247, 286
AjiI CACGTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 41
BfaI CTAG 2 cut(s) 89, 120
BglII AGATCT 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 11
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 69
BpiI GAAGAC 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 132
BseMII CTCAG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 64
BslFI GGGAC 2 cut(s) 21, 205
BsmFI GGGAC 2 cut(s) 21, 205
BsmI GAATGC 1 cut(s) 256
Bsp143I GATC 4 cut(s) 52, 65, 116, 127
BspCNI CTCAG 1 cut(s) 31
BspPI GGATC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 52, 65, 116, 127
Bst6I CTCTTC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 261
BstKTI GATC 4 cut(s) 55, 68, 119, 130
BstMBI GATC 4 cut(s) 52, 65, 116, 127
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 52, 116
BstYI RGATCY 2 cut(s) 52, 116
BtgI CCRYGG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 57
Csp6I GTAC 2 cut(s) 112, 266
CviAII CATG 3 cut(s) 69, 139, 187
CviJI RGCY 2 cut(s) 73, 170
CviKI_1 RGCY 2 cut(s) 73, 170
CviQI GTAC 2 cut(s) 112, 266
DdeI CTNAG 1 cut(s) 39
DpnI GATC 4 cut(s) 54, 67, 118, 129
DpnII GATC 4 cut(s) 52, 65, 116, 127
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
FaeI CATG 3 cut(s) 72, 142, 190
FaiI YATR 9 cut(s) 70, 99, 126, 140, 181, 188, 227, 240, 292
FaqI GGGAC 2 cut(s) 21, 205
FatI CATG 3 cut(s) 68, 138, 186
FspBI CTAG 2 cut(s) 89, 120
Hin1II CATG 3 cut(s) 72, 142, 190
HinfI GANTC 2 cut(s) 46, 101
Hpy188III TCNNGA 4 cut(s) 50, 89, 217, 247
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 10
Hsp92II CATG 3 cut(s) 72, 142, 190
Kzo9I GATC 4 cut(s) 52, 65, 116, 127
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 2 cut(s) 45, 188
LweI GCATC 1 cut(s) 262
MaeI CTAG 2 cut(s) 89, 120
MaeII ACGT 1 cut(s) 10
MalI GATC 4 cut(s) 54, 67, 118, 129
MboI GATC 4 cut(s) 52, 65, 116, 127
MboII GAAGA 4 cut(s) 46, 55, 156, 235
MflI RGATCY 2 cut(s) 52, 116
MluCI AATT 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 3 cut(s) 96, 140, 208
MseI TTAA 2 cut(s) 15, 78
Mva1269I GAATGC 1 cut(s) 256
NdeII GATC 4 cut(s) 52, 65, 116, 127
NlaIII CATG 3 cut(s) 72, 142, 190
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 46, 101
PsuI RGATCY 2 cut(s) 52, 116
RsaI GTAC 2 cut(s) 113, 267
RsaNI GTAC 2 cut(s) 112, 266
SaqAI TTAA 2 cut(s) 15, 78
Sau3AI GATC 4 cut(s) 52, 65, 116, 127
SetI ASST 4 cut(s) 13, 98, 151, 200
SfaNI GCATC 1 cut(s) 262
Sse9I AATT 1 cut(s) 250
SspMI CTAG 2 cut(s) 89, 120
TaiI ACGT 1 cut(s) 13
TasI AATT 1 cut(s) 250
TfiI GAWTC 2 cut(s) 46, 101
Tru1I TTAA 2 cut(s) 15, 78
Tru9I TTAA 2 cut(s) 15, 78
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 114, 227
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 1 cut(s) 64
XbaI TCTAGA 1 cut(s) 88
XspI CTAG 2 cut(s) 89, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.