Prupe.1G388000_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000210
Physical Location & Seq
Reverse (-)
34699558 .. 34701441
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G388000.1

Sequence Viewer

Length: 786 bp
ATGGATAAGAAGCTAAAGTGTCCACTAGAAAGGCCATCTTTTAGAGTGTTCCTTGTTGGTGATGACTTCTCTCAGCATCTGCGTATACCACCTGCATTTATCAAGAACTTCAATGGACGAAGACTTGGAAAATGTACTATGAGAGGCCCTACTGGAAAATGTTGGGCCGTGGAACTGGAACAGAGACGGGATGGCTTGTTCTTCCATAAGGGTTGGCCTGGTTTTGTGAAGGATCATTTTATAGAATCTGAGGACTTTCTGATCTTCGATTATGATGGTGGCTCAGAGTTTGATGTCACCATCTATGACAAAACTTGTTGCGAGAAGGATGTGAAAGCAGCCGCCAAGAGGCATGCAAGTGATCATTTGGCAGAAACATCAACTGGGGGGCCCATCTTGTTCAGTTCGGAGAATGCGTGTTTTACAAAAACTTTTAAGCCCCATAATCTATATAGTTTATTGATTCCAAAGTCTATAGCCGTAACTGAAGGACTTATGAGCTCTGAAGGCATTTTGATCAAAGAGACTATAATGCTTCAAGATCGAACCGGGAGATCGTGGCTTGTTCAGCTTGATGTCACCAGTGATGGTCGTTTGGTGATGAAAAGAGGATGGACGACATGTCGAGAGACAAACCAGATTTCACATGGGGACACCATCATTTTTGAGTTTGTGAAGCAAGGTGTGATACTACTTCATATTTTCAGAGGCAGAGGCGAAGGCGGTAGCTCTTCTGTGGTGGTTCTTTCAGGAGTTCTGCCCCGGAAGTCCAGTCAAAACCCATAG

Protein Analysis

262

Amino Acids

29.35

Weight (kDa)

8.8

Isoelectric Point (pI)

42.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 85
AciI CCGC 2 cut(s) 342, 723
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 2 cut(s) 507, 525
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 2 cut(s) 112, 539
AhdI GACNNNNNGTC 1 cut(s) 621
AjnI CCWGG 1 cut(s) 217
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 4 cut(s) 13, 501, 571, 729
AluI AGCT 4 cut(s) 13, 501, 571, 729
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 3 cut(s) 178, 518, 623
AlwI GGATC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 5 cut(s) 32, 145, 165, 215, 389
ApaI GGGCCC 1 cut(s) 393
ApeKI GCWGC 1 cut(s) 338
AspS9I GGNCC 4 cut(s) 146, 165, 389, 390
AsuC2I CCSGG 2 cut(s) 550, 763
AsuHPI GGTGA 4 cut(s) 71, 289, 571, 610
BaeGI GKGCMC 1 cut(s) 393
BanII GRGCYC 2 cut(s) 393, 503
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 350
BccI CCATC 8 cut(s) 43, 185, 269, 308, 401, 581, 606, 665
BceAI ACGGC 2 cut(s) 152, 464
BciT130I CCWGG 1 cut(s) 219
BclI TGATCA 2 cut(s) 361, 516
BcnI CCSGG 2 cut(s) 550, 763
BcoDI GTCTC 3 cut(s) 178, 518, 623
BfaI CTAG 1 cut(s) 26
BfmI CTRYAG 1 cut(s) 474
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 2 cut(s) 339, 342
BlsI GCNGC 2 cut(s) 340, 343
Bme1390I CCNGG 3 cut(s) 219, 550, 763
BmeRI GACNNNNNGTC 1 cut(s) 621
BmgT120I GGNCC 4 cut(s) 146, 165, 389, 390
BmiI GGNNCC 2 cut(s) 390, 391
BmrFI CCNGG 3 cut(s) 219, 550, 763
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 127
BpuMI CCSGG 2 cut(s) 550, 763
BsaJI CCNNGG 2 cut(s) 168, 761
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 5 cut(s) 157, 180, 388, 582, 771
BseBI CCWGG 1 cut(s) 219
BseDI CCNNGG 2 cut(s) 168, 761
BseGI GGATG 3 cut(s) 196, 334, 617
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 3 cut(s) 86, 240, 297
BseNI ACTGG 5 cut(s) 157, 180, 388, 582, 771
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 5 cut(s) 34, 147, 167, 217, 391
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 2 cut(s) 549, 763
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 178, 518, 623
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 665
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 5 cut(s) 34, 147, 167, 217, 391
Bsp120I GGGCCC 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 393, 503
Bsp143I GATC 6 cut(s) 232, 261, 361, 516, 541, 554
BspACI CCGC 2 cut(s) 342, 723
BspANI GGCC 5 cut(s) 34, 147, 167, 217, 391
BspCNI CTCAG 3 cut(s) 85, 241, 296
BspLI GGNNCC 2 cut(s) 390, 391
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 736
BsrI ACTGG 5 cut(s) 157, 180, 388, 582, 771
BssECI CCNNGG 2 cut(s) 168, 761
BssMI GATC 6 cut(s) 232, 261, 361, 516, 541, 554
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 3 cut(s) 72, 249, 283
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 196, 334, 617
BstKTI GATC 6 cut(s) 235, 264, 364, 519, 544, 557
BstMAI GTCTC 3 cut(s) 178, 518, 623
BstMBI GATC 6 cut(s) 232, 261, 361, 516, 541, 554
BstMWI GCNNNNNNNGC 2 cut(s) 507, 568
BstNI CCWGG 1 cut(s) 219
BstNSI RCATGY 2 cut(s) 356, 624
BstSCI CCNGG 3 cut(s) 217, 548, 761
BstSFI CTRYAG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 127
BstZ17I GTATAC 1 cut(s) 86
BsuRI GGCC 5 cut(s) 34, 147, 167, 217, 391
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 3 cut(s) 196, 334, 617
BtsIMutI CAGTG 1 cut(s) 589
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 79
Cfr13I GGNCC 4 cut(s) 146, 165, 389, 390
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 353, 621, 647
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 3 cut(s) 72, 249, 283
DpnI GATC 6 cut(s) 234, 263, 363, 518, 543, 556
DpnII GATC 6 cut(s) 232, 261, 361, 516, 541, 554
DriI GACNNNNNGTC 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 736
Eam1105I GACNNNNNGTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 736
Ecl136II GAGCTC 1 cut(s) 501
Eco24I GRGCYC 2 cut(s) 393, 503
Eco53kI GAGCTC 1 cut(s) 501
Eco57I CTGAAG 2 cut(s) 507, 525
EcoICRI GAGCTC 1 cut(s) 501
EcoO109I RGGNCCY 2 cut(s) 146, 389
EcoRII CCWGG 1 cut(s) 217
EcoT38I GRGCYC 2 cut(s) 393, 503
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 3 cut(s) 356, 624, 650
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FaqI GGGAC 1 cut(s) 665
FatI CATG 3 cut(s) 352, 620, 646
FbaI TGATCA 2 cut(s) 361, 516
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 339, 342
FokI GGATG 3 cut(s) 203, 341, 624
FriOI GRGCYC 2 cut(s) 393, 503
Fsp4HI GCNGC 2 cut(s) 339, 342
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 339, 342
HaeIII GGCC 5 cut(s) 34, 147, 167, 217, 391
HapII CCGG 2 cut(s) 549, 763
Hin1II CATG 3 cut(s) 356, 624, 650
HinfI GANTC 2 cut(s) 245, 463
HpaII CCGG 2 cut(s) 549, 763
HphI GGTGA 4 cut(s) 71, 289, 571, 610
Hpy166II GTNNAC 2 cut(s) 23, 86
Hpy188I TCNGA 6 cut(s) 250, 261, 286, 409, 505, 707
Hpy188III TCNNGA 4 cut(s) 103, 539, 626, 750
Hpy8I GTNNAC 2 cut(s) 23, 86
HpyAV CCTTC 5 cut(s) 223, 319, 482, 500, 713
HpyCH4V TGCA 2 cut(s) 95, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 568
HpyF3I CTNAG 3 cut(s) 72, 249, 283
Hsp92II CATG 3 cut(s) 356, 624, 650
Ksp22I TGATCA 2 cut(s) 361, 516
Kzo9I GATC 6 cut(s) 232, 261, 361, 516, 541, 554
LguI GCTCTTC 1 cut(s) 736
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 3 cut(s) 295, 481, 577
MalI GATC 6 cut(s) 234, 263, 363, 518, 543, 556
MboI GATC 6 cut(s) 232, 261, 361, 516, 541, 554
MboII GAAGA 4 cut(s) 132, 193, 256, 723
MhlI GDGCHC 2 cut(s) 393, 503
MnlI CCTC 6 cut(s) 137, 244, 342, 602, 701, 707
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 357
MspI CCGG 2 cut(s) 549, 763
MspR9I CCNGG 3 cut(s) 219, 550, 763
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 507, 568
NciI CCSGG 2 cut(s) 550, 763
NdeII GATC 6 cut(s) 232, 261, 361, 516, 541, 554
NlaIII CATG 3 cut(s) 356, 624, 650
NlaIV GGNNCC 2 cut(s) 390, 391
NmuCI GTSAC 2 cut(s) 295, 577
NspI RCATGY 2 cut(s) 356, 624
PaeI GCATGC 1 cut(s) 356
PaqCI CACCTGC 1 cut(s) 100
PciI ACATGT 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 2 cut(s) 245, 463
PkrI GCNGC 2 cut(s) 340, 343
PscI ACATGT 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 503
Psp6I CCWGG 1 cut(s) 217
PspGI CCWGG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 390, 391
PspOMI GGGCCC 1 cut(s) 389
PspPI GGNCC 4 cut(s) 146, 165, 389, 390
PstNI CAGNNNCTG 1 cut(s) 79
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 1 cut(s) 503
SapI GCTCTTC 1 cut(s) 736
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 339, 342
Sau3AI GATC 6 cut(s) 232, 261, 361, 516, 541, 554
Sau96I GGNCC 4 cut(s) 146, 165, 389, 390
ScrFI CCNGG 3 cut(s) 219, 550, 763
SduI GDGCHC 2 cut(s) 393, 503
SetI ASST 6 cut(s) 15, 94, 503, 573, 685, 731
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 357
SphI GCATGC 1 cut(s) 356
SsiI CCGC 2 cut(s) 342, 723
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 503
StyD4I CCNGG 3 cut(s) 217, 548, 761
TaqI TCGA 3 cut(s) 267, 544, 625
TatI WGTACW 1 cut(s) 134
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 2 cut(s) 245, 463
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 295, 577
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 295, 577
TspDTI ATGAA 2 cut(s) 617, 686
TspRI CASTG 1 cut(s) 589
XceI RCATGY 2 cut(s) 356, 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.