Prupe.4G207000_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000210
Physical Location & Seq
Reverse (-)
12901930 .. 12902751
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G207000.1

Sequence Viewer

Length: 501 bp
ATGGCTACGAAGCTAAGTAAGCCTTCACTACAGAAACAATCATTTTTCAAGGTCCTGCTTGGCGACTTCTATCAGCATCTGCGTTTACCACCTGTGTTTATCGAGAAGTTAGATGGAGAATCACTTCCCAAATGTGATCTTAGAGGCCCTAATGGGAAACTCTGGACTGTGGAATTGGAAGAGATCAGGGAGAATGGCTTTTTCTTCCATGATGGTTGGCAGGGTTTTGTGAGGGATCATTGTTTAGAAATCGGAAATTTTTTGGTTTTCGACTATGATGGTGACTCAAAGTTTGATGTCACAATTTATGAACCAACTGGCTGTGAAAAGGATGTAGAAGCTGCCAAGAGGAGAAATGGTAATCCTGTTTCCTCTGTAAAAGATGAAATTGTTGACATTGAGACTGAAAACTACAACAAAGAAAGTAAAAGCAAAACCATCAATGCTGAAAGAACAAGTCGTAAGTTCTACTCCATCTTAAATCTACTTTTGAACAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

167

Amino Acids

19.13

Weight (kDa)

5.47

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 1 cut(s) 256
AgsI TTSAA 2 cut(s) 49, 493
AluBI AGCT 3 cut(s) 13, 341, 498
AluI AGCT 3 cut(s) 13, 341, 498
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 1 cut(s) 79
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
Asp700I GAANNNNTTC 1 cut(s) 123
AspS9I GGNCC 2 cut(s) 52, 146
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 328
BccI CCATC 5 cut(s) 107, 206, 272, 446, 482
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 499
BfmI CTRYAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 52, 146
BmsI GCATC 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bse1I ACTGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 337
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 364
BseXI GCAGC 1 cut(s) 328
BshFI GGCC 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 395
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 136, 183, 235
BspANI GGCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 322
BssMI GATC 3 cut(s) 136, 183, 235
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 14, 140
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 3 cut(s) 139, 186, 238
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 3 cut(s) 136, 183, 235
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 52, 146
CviAII CATG 1 cut(s) 209
CviJI RGCY 8 cut(s) 5, 13, 22, 147, 198, 321, 341, 498
CviKI_1 RGCY 8 cut(s) 5, 13, 22, 147, 198, 321, 341, 498
DdeI CTNAG 2 cut(s) 14, 140
DpnI GATC 3 cut(s) 138, 185, 237
DpnII GATC 3 cut(s) 136, 183, 235
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 2 cut(s) 52, 146
FaeI CATG 1 cut(s) 212
FaiI YATR 3 cut(s) 210, 276, 309
FalI AAGNNNNNCTT 2 cut(s) 7, 39
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 499
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 1 cut(s) 212
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 119, 284
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 2 cut(s) 86, 394
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 103, 163
Hpy8I GTNNAC 2 cut(s) 86, 394
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 2 cut(s) 14, 140
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 3 cut(s) 136, 183, 235
LpnPI CCDG 7 cut(s) 68, 105, 148, 172, 206, 303, 378
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 499
MaeIII GTNAC 2 cut(s) 281, 298
MalI GATC 3 cut(s) 138, 185, 237
MboI GATC 3 cut(s) 136, 183, 235
MboII GAAGA 2 cut(s) 191, 196
MluCI AATT 4 cut(s) 173, 256, 303, 387
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 137, 225, 342, 382
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 3 cut(s) 136, 183, 235
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 281, 298
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspPI GGNCC 2 cut(s) 52, 146
PspPPI RGGWCCY 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 79
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 136, 183, 235
Sau96I GGNCC 2 cut(s) 52, 146
SchI GAGTC 1 cut(s) 278
SetI ASST 5 cut(s) 15, 54, 94, 343, 500
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 52
Sse9I AATT 4 cut(s) 173, 256, 303, 387
SspMI CTAG 1 cut(s) 499
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 2 cut(s) 102, 270
TasI AATT 4 cut(s) 173, 256, 303, 387
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TseFI GTSAC 2 cut(s) 281, 298
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 2 cut(s) 281, 298
TspDTI ATGAA 2 cut(s) 324, 399
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.