pycom11g22210

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000210
Physical Location & Seq
Reverse (-)
25224933 .. 25227945
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22210.3

Sequence Viewer

Length: 834 bp
ATGATTCATGACCCAACTGGGAGATCATGGCTTGTTAAACTTAACGTTCGCGGCAAGGTATCTCAGCGCCGTGTGGATATGGCAACAGGTTTGGGAGAATGTTGTAAAGCCAACCAGATATTACCTGGGGACGAAGTCGTTTTTGAGTTTGTCAAGCAAGGTCTTTTGCAAATTCATACCCACAGAATGGGAGCATTAGGAGGCAAATCTGTGCTACTCGAAGAACGTATACCACCTGCGTTTATTAGGAAGAACTTCAATGGACGATCACTTTGCAAATGTGATCTCAAAGGCCCTAGTGGAATACGGAGGACTGTGGAATTGGAAGAGAGGGAGAATGGCTTGTTCTTCCGCAATGGTTGGCTGGGTTTTGTGAAGGATCGATCGTTTAGAAGCTGCAATTACCTCATTTCTAGGAAGAGGCATTATCATTTGGAAGATACAGAAACTGGATCCATCCTGTTGAAATTAGAGAATCAATGTTTTCTAGCGTTTTCAAACAAGAAACATTTACTACGTTGCGTGAGGATTCCGAAGCAACTAGCTGTAGATCATCGCCTTATGTCTAAGAATACTGTAACGCTTCAAGATCCAGCTGGGAGATCATGGGTTATTCAACTCAGAATCAGAGGGGTTACTTCATCTCATCAGTTGGACATGTCAACAGGTTGGGTGCATTGTGTGAAAGCGAACCGGATTTCGCCGGGAGACACCATGATTTTTGAGTTTGTGAAGCAAGGTTTGATGAAGGTTCATATTTTTAGAAAAGGAGCAGTGAGAGGCGATAAGTGTCGTCTGGTGCTTGCTGGCCCTAATGTTAAAGCCGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

278

Amino Acids

31.47

Weight (kDa)

10.07

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 244
Acc36I ACCTGC 1 cut(s) 244
AccB7I CCANNNNNTGG 1 cut(s) 187
AccI GTMKAC 1 cut(s) 229
AccII CGCG 1 cut(s) 51
AciI CCGC 2 cut(s) 51, 352
AclI AACGTT 1 cut(s) 45
AclWI GGATC 4 cut(s) 387, 447, 460, 584
AcsI RAATTY 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 5 cut(s) 259, 466, 498, 587, 617
AjnI CCWGG 1 cut(s) 124
AluBI AGCT 4 cut(s) 396, 545, 596, 831
AluI AGCT 4 cut(s) 396, 545, 596, 831
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 4 cut(s) 387, 447, 460, 584
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 2 cut(s) 292, 808
ApeKI GCWGC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 171
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 293, 809
AsuC2I CCSGG 1 cut(s) 705
BamHI GGATCC 1 cut(s) 452
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BbvI GCAGC 1 cut(s) 383
BccI CCATC 1 cut(s) 464
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 255, 289
BciT130I CCWGG 1 cut(s) 126
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 1 cut(s) 702
BfaI CTAG 5 cut(s) 297, 414, 488, 542, 832
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 2 cut(s) 52, 397
BlsI GCNGC 2 cut(s) 53, 398
Bme1390I CCNGG 2 cut(s) 126, 705
BmgT120I GGNCC 2 cut(s) 293, 809
BmiI GGNNCC 1 cut(s) 454
BmrFI CCNGG 2 cut(s) 126, 705
BmrI ACTGGG 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 27
BpuMI CCSGG 1 cut(s) 705
Bsa29I ATCGAT 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 22, 454
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 126
BseCI ATCGAT 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 77, 634
BseNI ACTGG 2 cut(s) 22, 454
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 2 cut(s) 364, 596
Bsh1236I CGCG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 294, 810
BshVI ATCGAT 1 cut(s) 382
BsiEI CGRYCG 1 cut(s) 386
BsiSI CCGG 2 cut(s) 694, 704
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 702
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 2 cut(s) 294, 810
Bsp143I GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
BspACI CCGC 2 cut(s) 51, 352
BspANI GGCC 2 cut(s) 294, 810
BspCNI CTCAG 2 cut(s) 76, 633
BspDI ATCGAT 1 cut(s) 382
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 244
BspPI GGATC 4 cut(s) 387, 447, 460, 584
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 2 cut(s) 22, 454
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
BssNAI GTATAC 1 cut(s) 230
Bst1107I GTATAC 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 316, 577
Bst6I CTCTTC 2 cut(s) 321, 413
BstC8I GCNNGC 2 cut(s) 804, 808
BstDEI CTNAG 3 cut(s) 63, 567, 620
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 9 cut(s) 26, 269, 286, 382, 386, 455, 553, 592, 605
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
BstMCI CGRYCG 1 cut(s) 386
BstNI CCWGG 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 661
BstSCI CCNGG 2 cut(s) 124, 703
BstSFI CTRYAG 1 cut(s) 546
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 383
BstX2I RGATCY 2 cut(s) 452, 589
BstYI RGATCY 2 cut(s) 452, 589
BstZ17I GTATAC 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 2 cut(s) 294, 810
BsuTUI ATCGAT 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 539
BtsCI GGATG 1 cut(s) 456
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 2 cut(s) 804, 808
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 7
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 293, 809
ClaI ATCGAT 1 cut(s) 382
CviAII CATG 5 cut(s) 8, 27, 606, 658, 715
DdeI CTNAG 3 cut(s) 63, 567, 620
DpnI GATC 9 cut(s) 25, 268, 285, 381, 385, 454, 552, 591, 604
DpnII GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
Eam1104I CTCTTC 2 cut(s) 321, 413
EarI CTCTTC 2 cut(s) 321, 413
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 124
FaeI CATG 5 cut(s) 11, 30, 609, 661, 718
FaqI GGGAC 1 cut(s) 143
FatI CATG 5 cut(s) 7, 26, 605, 657, 714
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 52, 397
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 52, 397
FspBI CTAG 5 cut(s) 297, 414, 488, 542, 832
GlaI GCGC 1 cut(s) 68
GluI GCNGC 2 cut(s) 52, 397
GsaI CCCAGC 2 cut(s) 368, 600
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 2 cut(s) 294, 810
HapII CCGG 2 cut(s) 694, 704
HhaI GCGC 1 cut(s) 69
Hin1II CATG 5 cut(s) 11, 30, 609, 661, 718
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 663
HindII GTYRAC 1 cut(s) 663
HinfI GANTC 4 cut(s) 4, 475, 529, 624
HpaII CCGG 2 cut(s) 694, 704
Hpy166II GTNNAC 2 cut(s) 230, 663
Hpy188I TCNGA 3 cut(s) 534, 623, 629
Hpy188III TCNNGA 2 cut(s) 8, 587
Hpy8I GTNNAC 2 cut(s) 230, 663
HpyAV CCTTC 2 cut(s) 370, 742
HpyCH4III ACNGT 2 cut(s) 316, 577
HpyCH4IV ACGT 3 cut(s) 45, 226, 517
HpyCH4V TGCA 4 cut(s) 169, 276, 399, 676
HpyF3I CTNAG 3 cut(s) 63, 567, 620
HpySE526I ACGT 3 cut(s) 45, 226, 517
Hsp92II CATG 5 cut(s) 11, 30, 609, 661, 718
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
LmnI GCTCC 2 cut(s) 191, 770
Lsp1109I GCAGC 1 cut(s) 383
MaeI CTAG 5 cut(s) 297, 414, 488, 542, 832
MaeII ACGT 3 cut(s) 45, 226, 517
MaeIII GTNAC 2 cut(s) 577, 634
MalI GATC 9 cut(s) 25, 268, 285, 381, 385, 454, 552, 591, 604
MboI GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
MboII GAAGA 6 cut(s) 233, 262, 338, 340, 430, 449
MflI RGATCY 2 cut(s) 452, 589
MluCI AATT 4 cut(s) 171, 320, 400, 467
MmeI TCCRAC 1 cut(s) 633
MnlI CCTC 8 cut(s) 194, 303, 324, 414, 416, 519, 623, 773
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 3 cut(s) 36, 42, 819
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 2 cut(s) 694, 704
MspR9I CCNGG 2 cut(s) 126, 705
MvaI CCWGG 1 cut(s) 126
MvnI CGCG 1 cut(s) 51
NciI CCSGG 1 cut(s) 705
NdeII GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
NlaIII CATG 5 cut(s) 11, 30, 609, 661, 718
NlaIV GGNNCC 1 cut(s) 454
NspI RCATGY 1 cut(s) 661
PagI TCATGA 1 cut(s) 7
PaqCI CACCTGC 1 cut(s) 244
PciI ACATGT 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 4 cut(s) 4, 475, 529, 624
PflFI GACNNNGTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 2 cut(s) 53, 398
Ple19I CGATCG 1 cut(s) 386
PscI ACATGT 1 cut(s) 657
Psp1406I AACGTT 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 124
PspFI CCCAGC 2 cut(s) 364, 596
PspGI CCWGG 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 454
PspPI GGNCC 2 cut(s) 293, 809
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 2 cut(s) 452, 589
PsyI GACNNNGTC 1 cut(s) 134
PvuI CGATCG 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 596
SaqAI TTAA 3 cut(s) 36, 42, 819
SatI GCNGC 2 cut(s) 52, 397
Sau3AI GATC 9 cut(s) 23, 266, 283, 379, 383, 452, 550, 589, 602
Sau96I GGNCC 2 cut(s) 293, 809
ScrFI CCNGG 2 cut(s) 126, 705
SfcI CTRYAG 1 cut(s) 546
Sse9I AATT 4 cut(s) 171, 320, 400, 467
SsiI CCGC 2 cut(s) 51, 352
SspMI CTAG 5 cut(s) 297, 414, 488, 542, 832
StyD4I CCNGG 2 cut(s) 124, 703
TaaI ACNGT 2 cut(s) 316, 577
TaiI ACGT 3 cut(s) 48, 229, 520
TaqI TCGA 2 cut(s) 219, 382
TasI AATT 4 cut(s) 171, 320, 400, 467
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 4 cut(s) 4, 475, 529, 624
Tru1I TTAA 3 cut(s) 36, 42, 819
Tru9I TTAA 3 cut(s) 36, 42, 819
TscAI CASTG 1 cut(s) 780
TseI GCWGC 1 cut(s) 396
TspDTI ATGAA 4 cut(s) 164, 630, 743, 761
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 780
Tth111I GACNNNGTC 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 187
XapI RAATTY 1 cut(s) 171
XceI RCATGY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XmiI GTMKAC 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 5 cut(s) 297, 414, 488, 542, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.