Prupe.7G064600_v2.0.a1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000210
Physical Location & Seq
Forward (+)
10311714 .. 10313904
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G064600.2

Sequence Viewer

Length: 912 bp
ATGGGTAGAAAACCAACTAAGCCTTCACCAAAGATACCATCATTTTTCAAGGTCCTGGTTGGTGAATTCTCTCAGCGTTTGAGTATACCACCTGCATTTATGTACCATGTCAATGGACGATTGTCTCCCAAATGTACTCTTAGAGATCCTAGTGGAGACTGTTGGACAGTGGGTTTGGAAGTGAGAGGGGATAGATTTTTCTTCCATGAGGGTTGGCAGCGTTTTGTGAAGGACCATTCTTTGGAAATTGCAAATGTTTTGGTTTTTGATTATGATGGCAAGTCCAAGTTTGATGTCACACTGTATGATCCAATTGGCTCTGAGAAGGAGTTAGAACCAGCCAAGAAGAGAAGGGGAAATCGAGCTCGAGTAAAGGAGGAGATCATTGAGCTTGACACTGAAGAACCTGACAAGGACAGTGAAGAAGATGCTCGTATGTCAAACATAAGGAAGCGCAAGTCTTTCAAGTCTGGAAAGAGGATTGCAAGAACTGATGGTGGGAATGAAACATCAAATGCACCTATTGTGTTCAGATCGAAGCATCTATGCTTCATTCGAGCTATGAGGAAGAACCGCTATCGCATGAATTTTCCGAAGGAGCTGGCTGTGGCTAAAGGTCTCATTAGAAAGAAGAGTGTAAGGGTTGAAGACCCACATGGGATATCATGGGATGTTAAACTAAGGCTTGATGAAAAAGAACATAACGGTGGTCGTTTGCTCATGACAAAAGGGTGGTCAGAATGTTGTTATGCAAACAACATTTCACTTGGGGACACACTGGTTTTTGAGCTTGTCAACGCCATGCACGGTGGAATGAAAATGCATATTTTCCGAGGAAATAGTTATGTTGTATTGGATGCCTCTTGTGTCAAGTATCAGGGCTATGTAGTTGAGAACCTGGCATTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

304

Amino Acids

34.76

Weight (kDa)

9.48

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 100
AccB7I CCANNNNNTGG 1 cut(s) 241
AccI GTMKAC 1 cut(s) 85
AciI CCGC 1 cut(s) 574
AclWI GGATC 2 cut(s) 140, 302
AcsI RAATTY 2 cut(s) 65, 586
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 104, 136
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 49, 466, 647
AjnI CCWGG 2 cut(s) 54, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 7, 39
AluBI AGCT 5 cut(s) 365, 391, 560, 601, 790
AluI AGCT 5 cut(s) 365, 391, 560, 601, 790
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 3 cut(s) 129, 150, 623
AlwI GGATC 2 cut(s) 140, 302
Ama87I CYCGRG 1 cut(s) 366
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 65, 586
ArsI GACNNNNNNTTYG 4 cut(s) 157, 189, 719, 751
AspLEI GCGC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 52, 232
AsuHPI GGTGA 2 cut(s) 18, 74
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 2 cut(s) 52, 232
BanII GRGCYC 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 46, 269, 488
BciT130I CCWGG 2 cut(s) 56, 899
BcoDI GTCTC 3 cut(s) 129, 150, 623
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
Bme1390I CCNGG 2 cut(s) 56, 899
Bme18I GGWCC 2 cut(s) 52, 232
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 52, 232
BmrFI CCNGG 2 cut(s) 56, 899
BmsI GCATC 3 cut(s) 418, 550, 847
BoxI GACNNNNGTC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 1 cut(s) 832
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 902
BseBI CCWGG 2 cut(s) 56, 899
BseDI CCNNGG 1 cut(s) 832
BseGI GGATG 2 cut(s) 676, 862
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 902
BseMII CTCAG 2 cut(s) 86, 312
BseNI ACTGG 1 cut(s) 783
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 366
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 129, 150, 623
BsmFI GGGAC 1 cut(s) 785
Bso31I GGTCTC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 4 cut(s) 145, 307, 381, 533
BspACI CCGC 1 cut(s) 574
BspCNI CTCAG 2 cut(s) 85, 313
BspHI TCATGA 1 cut(s) 720
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 140, 302
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 902
BsrI ACTGG 1 cut(s) 783
BssECI CCNNGG 1 cut(s) 832
BssMI GATC 4 cut(s) 145, 307, 381, 533
BssNAI GTATAC 1 cut(s) 86
Bst1107I GTATAC 1 cut(s) 86
Bst2UI CCWGG 2 cut(s) 56, 899
Bst4CI ACNGT 6 cut(s) 161, 169, 303, 419, 707, 809
Bst6I CTCTTC 2 cut(s) 341, 626
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 5 cut(s) 18, 72, 140, 321, 680
BstF5I GGATG 2 cut(s) 676, 862
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 4 cut(s) 148, 310, 384, 536
BstMAI GTCTC 3 cut(s) 129, 150, 623
BstMBI GATC 4 cut(s) 145, 307, 381, 533
BstNI CCWGG 2 cut(s) 56, 899
BstPAI GACNNNNGTC 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 54, 897
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 113
BstYI RGATCY 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 86
BtsCI GGATG 2 cut(s) 676, 862
BtsIMutI CAGTG 5 cut(s) 174, 299, 396, 424, 776
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 603
CciI TCATGA 1 cut(s) 720
CfoI GCGC 1 cut(s) 456
Cfr13I GGNCC 2 cut(s) 52, 232
Csp6I GTAC 2 cut(s) 103, 135
CviAII CATG 7 cut(s) 107, 206, 583, 656, 666, 721, 802
CviQI GTAC 2 cut(s) 103, 135
DdeI CTNAG 5 cut(s) 18, 72, 140, 321, 680
DpnI GATC 4 cut(s) 147, 309, 383, 535
DpnII GATC 4 cut(s) 145, 307, 381, 533
Eam1104I CTCTTC 2 cut(s) 341, 626
EarI CTCTTC 2 cut(s) 341, 626
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 623
Eco32I GATATC 1 cut(s) 663
Eco47I GGWCC 2 cut(s) 52, 232
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 365
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 54, 897
EcoRV GATATC 1 cut(s) 663
EcoT22I ATGCAT 1 cut(s) 825
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 7 cut(s) 110, 209, 586, 659, 669, 724, 805
FaqI GGGAC 1 cut(s) 785
FatI CATG 7 cut(s) 106, 205, 582, 655, 665, 720, 801
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 218
FokI GGATG 2 cut(s) 683, 869
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 456
Hin1II CATG 7 cut(s) 110, 209, 586, 659, 669, 724, 805
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 796
HindII GTYRAC 1 cut(s) 796
HphI GGTGA 2 cut(s) 18, 74
Hpy166II GTNNAC 2 cut(s) 86, 796
Hpy188I TCNGA 5 cut(s) 322, 533, 594, 739, 833
Hpy188III TCNNGA 2 cut(s) 471, 721
Hpy8I GTNNAC 2 cut(s) 86, 796
HpyAV CCTTC 5 cut(s) 33, 223, 319, 345, 589
HpyCH4III ACNGT 6 cut(s) 161, 169, 303, 419, 707, 809
HpyCH4V TGCA 8 cut(s) 95, 251, 485, 518, 752, 805, 823, 907
HpyF3I CTNAG 5 cut(s) 18, 72, 140, 321, 680
Hsp92II CATG 7 cut(s) 110, 209, 586, 659, 669, 724, 805
HspAI GCGC 1 cut(s) 454
Kzo9I GATC 4 cut(s) 145, 307, 381, 533
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 3 cut(s) 418, 550, 847
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 295
MalI GATC 4 cut(s) 147, 309, 383, 535
MboI GATC 4 cut(s) 145, 307, 381, 533
MboII GAAGA 8 cut(s) 193, 358, 413, 434, 437, 580, 643, 659
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 4 cut(s) 65, 246, 312, 586
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 7 cut(s) 179, 202, 370, 471, 558, 827, 871
Mph1103I ATGCAT 1 cut(s) 825
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 3 cut(s) 111, 705, 907
MspR9I CCNGG 2 cut(s) 56, 899
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 2 cut(s) 56, 899
NdeII GATC 4 cut(s) 145, 307, 381, 533
NlaIII CATG 7 cut(s) 110, 209, 586, 659, 669, 724, 805
NmuCI GTSAC 1 cut(s) 295
NsiI ATGCAT 1 cut(s) 825
PaeR7I CTCGAG 1 cut(s) 366
PagI TCATGA 1 cut(s) 720
PaqCI CACCTGC 1 cut(s) 100
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 367
Psp5II RGGWCCY 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 54, 897
PspGI CCWGG 2 cut(s) 54, 897
PspPI GGNCC 2 cut(s) 52, 232
PspPPI RGGWCCY 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 366
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 104, 136
RsaNI GTAC 2 cut(s) 103, 135
RseI CAYNNNNRTG 3 cut(s) 111, 705, 907
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 1 cut(s) 218
Sau3AI GATC 4 cut(s) 145, 307, 381, 533
Sau96I GGNCC 2 cut(s) 52, 232
ScrFI CCNGG 2 cut(s) 56, 899
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 3 cut(s) 418, 550, 847
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 2 cut(s) 52, 232
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 3 cut(s) 111, 705, 907
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 4 cut(s) 65, 246, 312, 586
SsiI CCGC 1 cut(s) 574
SspMI CTAG 1 cut(s) 150
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 2 cut(s) 54, 897
TaaI ACNGT 6 cut(s) 161, 169, 303, 419, 707, 809
TaqI TCGA 4 cut(s) 361, 367, 536, 556
TasI AATT 4 cut(s) 65, 246, 312, 586
TatI WGTACW 1 cut(s) 134
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 5 cut(s) 174, 306, 403, 424, 783
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 5 cut(s) 519, 541, 599, 705, 830
TspRI CASTG 5 cut(s) 174, 306, 403, 424, 783
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 52, 232
XapI RAATTY 2 cut(s) 65, 586
XhoI CTCGAG 1 cut(s) 366
XmiI GTMKAC 1 cut(s) 85
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.