RLG00000001845

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000210
Physical Location & Seq
Reverse (-)
21827284 .. 21831188
3905 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001845

Sequence Viewer

Length: 1248 bp
ATGGCCAGGAAGCCAATTAACAAGTGTTCACCAAATAAACCGTCATTTTTCAAGGTGCTGTTTGGTGACTTCTGTAAGCGTCTGCTTATACCCCCAGAATTTACCAAGAACTTCATTTGGAATGGGAGATCACCTCACGAATGTGCTCTTAGAGGTCCTAGTGGACAATGTTGGGCTGTGGAATTGGAAAGAACAGAAAATGGCTTGCTCTTCCAGAATGGATGGCAGTGTTTTGTGAAGGATCACCATTTAGAACTTGGGGATTTTTTGATCTTCAGATATAATGGTGAATCAAAGTTTAATGTCATAATCTATGATAGAAGTGCCTGCGAGAAAGATGTAAAAGTAGCCAAGAGGAGAGTGAACTGTTCTGTTTGTTTGAGGAATAATGGAAATCAAGCTCGAGTAAAAGATGAAGTTCTTGACCTTGTAACTGAAAACAACAAGATCATAGACAGTGGAGGCGAAACAGTCATTGCTGATGAAAAAGGTTGTAAAGTTGTACGTAGCAATGATGTCATGTCGGGAAAGAGACCTGCTAATGGTTACTTGGAAGAAACATCGGATGGATCCATCTTGTTCAAATCGGAGAATCCATGTTTTCAAAGAATTTTGACGAAGCATTCAAAATATCACATTGGGTTTCCAAAAGAATTAGCTGTAGCTAAAGGTCTTATGAATAAGAAGACCATGAAGCTTGAAGATCCAACTGGGAGATCATGGCCTGTTAATCTGCGTCTTTCTAAATTTTACAAAAAAGATGCCAGATTATATGACCGTTTAGACTTGACATCAGCTCCCATCATTATTCAAGTGGATTCATCTGAAGCTGTCCGGCTGATCAATGCTCCTAATGGCGGTGGTCAATGGTGGGAGGTCTTGTCTCTTGCCAAGGCATCTCTGATTGCGGTGAAGACAATGGTAGTGATGGAGGAGAGGGAGATGGGGAATGGAGTAGCGGAAGCAACGAAACATATAGCTCAGCTCCTCCTGTCATTAGGTTCTCTGATTATGGTGGCTTCAGTTGCTTTTGTGCGCTGCTGGTTGGTGATTGGGTCTGATCCTCCTTTCAAGGTTGATATCATTGATGAGGATCAAAAGGAGCGCGTGAACCAGATGATTGAAGATCACGAGCCTTTTAAGGGGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGATGAGACAAAGGTGTTTGAAGAGGTGGCTGTAACGTATCAGGGTTTTATTTTAGTCGTTCCTTCCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

416

Amino Acids

46.77

Weight (kDa)

8.49

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 26 - 107 3e-15 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 544
AccII CGCG 1 cut(s) 1107
AciI CCGC 3 cut(s) 858, 908, 959
AclWI GGATC 6 cut(s) 249, 564, 577, 698, 1055, 1101
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 98, 609, 746
AcuI CTGAAG 3 cut(s) 259, 846, 1005
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 3 cut(s) 542, 857, 1142
AjnI CCWGG 1 cut(s) 5
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 8 cut(s) 401, 659, 665, 697, 797, 830, 980, 985
AluI AGCT 8 cut(s) 401, 659, 665, 697, 797, 830, 980, 985
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 3 cut(s) 526, 888, 1175
AlwI GGATC 6 cut(s) 249, 564, 577, 698, 1055, 1101
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 2 cut(s) 3, 722
ApeKI GCWGC 1 cut(s) 1038
ApoI RAATTY 3 cut(s) 98, 609, 746
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 2 cut(s) 1038, 1107
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 7 cut(s) 21, 77, 123, 236, 299, 922, 1060
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 569
BauI CACGAG 1 cut(s) 1130
BbsI GAAGAC 2 cut(s) 692, 920
Bbv12I GWGCWC 1 cut(s) 148
BbvI GCAGC 1 cut(s) 1025
BccI CCATC 6 cut(s) 216, 560, 581, 809, 922, 937
BciT130I CCWGG 1 cut(s) 7
BclI TGATCA 1 cut(s) 840
BcoDI GTCTC 3 cut(s) 526, 888, 1175
BfaI CTAG 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 544
BisI GCNGC 1 cut(s) 1039
BlpI GCTNAGC 1 cut(s) 981
BlsI GCNGC 1 cut(s) 1040
Bme1390I CCNGG 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 571
BmrFI CCNGG 1 cut(s) 7
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 3 cut(s) 751, 905, 1149
BmuI ACTGGG 1 cut(s) 720
BpiI GAAGAC 2 cut(s) 692, 920
BplI GAGNNNNNCTC 2 cut(s) 118, 150
Bpu1102I GCTNAGC 1 cut(s) 981
BsaAI YACGTR 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 1092
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 1 cut(s) 891
BsaWI WCCGGW 1 cut(s) 1241
BsaXI ACNNNNNCTCC 6 cut(s) 781, 811, 866, 896, 1138, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 857, 1142
Bse1I ACTGG 1 cut(s) 715
Bse3DI GCAATG 2 cut(s) 474, 517
Bse8I GATNNNNATC 1 cut(s) 1092
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 1 cut(s) 891
BseGI GGATG 3 cut(s) 227, 571, 1164
BseJI GATNNNNATC 1 cut(s) 1092
BseLI CCNNNNNNNGG 3 cut(s) 542, 857, 1142
BseMI GCAATG 2 cut(s) 474, 517
BseMII CTCAG 1 cut(s) 995
BseNI ACTGG 1 cut(s) 715
BseRI GAGGAG 3 cut(s) 370, 947, 977
BseXI GCAGC 1 cut(s) 1025
Bsh1236I CGCG 1 cut(s) 1107
BshFI GGCC 2 cut(s) 5, 724
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 2 cut(s) 835, 1242
BslI CCNNNNNNNGG 3 cut(s) 542, 857, 1142
BsmAI GTCTC 3 cut(s) 526, 888, 1175
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 2 cut(s) 5, 724
Bso31I GGTCTC 1 cut(s) 526
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 148
Bsp1720I GCTNAGC 1 cut(s) 981
BspACI CCGC 3 cut(s) 858, 908, 959
BspANI GGCC 2 cut(s) 5, 724
BspCNI CTCAG 1 cut(s) 994
BspFNI CGCG 1 cut(s) 1107
BspLI GGNNCC 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 6 cut(s) 249, 564, 577, 698, 1055, 1101
BspQI GCTCTTC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 526
BsrDI GCAATG 2 cut(s) 474, 517
BsrI ACTGG 1 cut(s) 715
BssECI CCNNGG 1 cut(s) 891
BssSI CACGAG 1 cut(s) 1130
BssT1I CCWWGG 1 cut(s) 891
Bst2BI CACGAG 1 cut(s) 1130
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 5 cut(s) 42, 368, 458, 472, 779
Bst6I CTCTTC 2 cut(s) 215, 1191
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 206, 328
BstDEI CTNAG 2 cut(s) 149, 981
BstF5I GGATG 3 cut(s) 227, 571, 1164
BstFNI CGCG 1 cut(s) 1107
BstHHI GCGC 2 cut(s) 1038, 1107
BstMAI GTCTC 3 cut(s) 526, 888, 1175
BstMWI GCNNNNNNNGC 1 cut(s) 1025
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 660
BstSNI TACGTA 1 cut(s) 506
BstUI CGCG 1 cut(s) 1107
BstV1I GCAGC 1 cut(s) 1025
BstV2I GAAGAC 2 cut(s) 692, 920
BstX2I RGATCY 2 cut(s) 569, 703
BstYI RGATCY 2 cut(s) 569, 703
BsuRI GGCC 2 cut(s) 5, 724
BtsCI GGATG 3 cut(s) 227, 571, 1164
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 233, 463
BveI ACCTGC 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 206, 328
CfoI GCGC 2 cut(s) 1038, 1107
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 2 cut(s) 68, 725
Csp6I GTAC 1 cut(s) 503
CviAII CATG 4 cut(s) 520, 597, 691, 720
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 2 cut(s) 149, 981
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 215, 1191
EarI CTCTTC 2 cut(s) 215, 1191
Eco105I TACGTA 1 cut(s) 506
Eco130I CCWWGG 1 cut(s) 891
Eco31I GGTCTC 1 cut(s) 526
Eco32I GATATC 1 cut(s) 1081
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 3 cut(s) 259, 846, 1005
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 1081
EcoT14I CCWWGG 1 cut(s) 891
ErhI CCWWGG 1 cut(s) 891
FaeI CATG 4 cut(s) 523, 600, 694, 723
FatI CATG 4 cut(s) 519, 596, 690, 719
FbaI TGATCA 1 cut(s) 840
Fnu4HI GCNGC 1 cut(s) 1039
FokI GGATG 3 cut(s) 234, 578, 1171
Fsp4HI GCNGC 1 cut(s) 1039
FspBI CTAG 1 cut(s) 159
GlaI GCGC 2 cut(s) 1037, 1106
GluI GCNGC 1 cut(s) 1039
HaeIII GGCC 2 cut(s) 5, 724
HapII CCGG 2 cut(s) 835, 1242
HgaI GACGC 2 cut(s) 68, 725
HhaI GCGC 2 cut(s) 1038, 1107
Hin1II CATG 4 cut(s) 523, 600, 694, 723
Hin6I GCGC 2 cut(s) 1036, 1105
HinP1I GCGC 2 cut(s) 1036, 1105
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 3 cut(s) 290, 592, 818
HpaII CCGG 2 cut(s) 835, 1242
HphI GGTGA 7 cut(s) 21, 77, 123, 236, 299, 922, 1060
Hpy166II GTNNAC 4 cut(s) 29, 164, 364, 1111
Hpy188I TCNGA 7 cut(s) 278, 565, 589, 826, 903, 1008, 1060
Hpy188III TCNNGA 5 cut(s) 137, 214, 422, 525, 1130
Hpy8I GTNNAC 4 cut(s) 29, 164, 364, 1111
HpyAV CCTTC 2 cut(s) 232, 1248
HpyCH4III ACNGT 5 cut(s) 42, 368, 458, 472, 779
HpyCH4IV ACGT 2 cut(s) 505, 1211
HpyF10VI GCNNNNNNNGC 1 cut(s) 1025
HpyF3I CTNAG 2 cut(s) 149, 981
HpySE526I ACGT 2 cut(s) 505, 1211
Hsp92II CATG 4 cut(s) 523, 600, 694, 723
HspAI GCGC 2 cut(s) 1036, 1105
Ksp22I TGATCA 1 cut(s) 840
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 4 cut(s) 802, 853, 990, 1102
Lsp1109I GCAGC 1 cut(s) 1025
LweI GCATC 3 cut(s) 751, 905, 1149
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 505, 1211
MaeIII GTNAC 4 cut(s) 65, 430, 545, 1207
MboII GAAGA 8 cut(s) 202, 265, 566, 697, 713, 925, 1136, 1208
MflI RGATCY 2 cut(s) 569, 703
MhlI GDGCHC 1 cut(s) 148
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 15, 98, 182, 609, 653, 746
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 731, 1136
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 18, 300, 729, 1140, 1246
MslI CAYNNNNRTG 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 835, 1242
MspR9I CCNGG 1 cut(s) 7
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 1107
MwoI GCNNNNNNNGC 1 cut(s) 1025
NlaIII CATG 4 cut(s) 523, 600, 694, 723
NlaIV GGNNCC 1 cut(s) 571
NmuCI GTSAC 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 3 cut(s) 290, 592, 818
PkrI GCNGC 1 cut(s) 1040
Ppu21I YACGTR 1 cut(s) 506
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 571
PspPI GGNCC 1 cut(s) 155
PspPPI RGGWCCY 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 402
PsuI RGATCY 2 cut(s) 569, 703
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 5 cut(s) 18, 300, 729, 1140, 1246
SatI GCNGC 1 cut(s) 1039
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 7
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 3 cut(s) 751, 905, 1149
SfcI CTRYAG 1 cut(s) 660
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SnaBI TACGTA 1 cut(s) 506
Sse9I AATT 6 cut(s) 15, 98, 182, 609, 653, 746
SsiI CCGC 3 cut(s) 858, 908, 959
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 891
TaaI ACNGT 5 cut(s) 42, 368, 458, 472, 779
TaiI ACGT 2 cut(s) 508, 1214
TaqI TCGA 1 cut(s) 403
TasI AATT 6 cut(s) 15, 98, 182, 609, 653, 746
TfiI GAWTC 3 cut(s) 290, 592, 818
Tru1I TTAA 5 cut(s) 18, 300, 729, 1140, 1246
Tru9I TTAA 5 cut(s) 18, 300, 729, 1140, 1246
TscAI CASTG 2 cut(s) 233, 463
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 1038
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 6 cut(s) 103, 429, 498, 692, 707, 810
TspRI CASTG 2 cut(s) 233, 463
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 3 cut(s) 98, 609, 746
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 402
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.