Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Reverse (-)

17195199 .. 17197850

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0195600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTCCGAGGACGTTGATTCTTCACCGGTTGACGGCGCACTTTGCCGGTCGAATCAGGCAGAACCAGAGGCTGCTCAGCTCTCATTTTTATTCCTCCACGGCGTTGGAAGAAGCCCCTTCCTCTTCTTCCTCCTCCTCCTCGCCGAACTTGGACGGCGTTCACATGACGGACACATGTGTTCAGAAAATTAAACAACTGCAAGCCAGTGAAGCACAGGAAAAGCTGCTCCGCTTGAGTGTAGAAACAGGTGGATGTTCTGGGTTCCAATATGTTTTTGATCTGGTGGATGACAAAACCAATCCAGATGACAGGGTGTTCGAGAAAGAAGGAGTAAAATTGGTAGTCGACAATATTTCATATGATTTTTTGAAAGGGGCAACCGTTGATTATGTTGAGGAGCTGATCCGTTCTGCTTTCCAAGTGACAGAAAATCCAAGTGCAGTCCAGGGTTGCAGTTGTAAAAGTTCTTTCATGGTGAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

162

Amino Acids

17.93

Weight (kDa)

5.79

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fe-S_biosyn	PF01521	54 - 155	3.9e-17	Iron-sulphur cluster biosynthesis

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	176
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	3 cut(s)	81, 226, 403
AluI	AGCT	3 cut(s)	81, 226, 403
AlwI	GGATC	1 cut(s)	400
AlwNI	CAGNNNCTG	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	73, 226
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	60, 213
BceAI	ACGGC	3 cut(s)	51, 117, 172
BciT130I	CCWGG	1 cut(s)	449
BisI	GCNGC	2 cut(s)	74, 227
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	2 cut(s)	75, 228
Bme1390I	CCNGG	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	6, 266
BmrFI	CCNGG	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	77
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	3 cut(s)	8, 99, 448
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	2 cut(s)	27, 47
Bse1I	ACTGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	3 cut(s)	8, 99, 448
BseGI	GGATG	2 cut(s)	260, 295
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	4 cut(s)	124, 127, 130, 413
BseXI	GCAGC	2 cut(s)	60, 213
BsgI	GTGCAG	1 cut(s)	462
Bsh1285I	CGRYCG	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	52
BsiSI	CCGG	2 cut(s)	28, 48
BslI	CCNNNNNNNGG	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	280, 405
Bsp1720I	GCTNAGC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	232
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	6, 266
BspPI	GGATC	1 cut(s)	400
BsrFI	RCCGGY	2 cut(s)	27, 47
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	2 cut(s)	27, 47
BssECI	CCNNGG	3 cut(s)	8, 99, 448
BssMI	GATC	2 cut(s)	280, 405
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	130
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	260, 295
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	283, 408
BstMBI	GATC	2 cut(s)	280, 405
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 212
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	60, 213
BstXI	CCANNNNNNTGG	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	260, 295
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	27, 47
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	3 cut(s)	166, 177, 475
CviJI	RGCY	7 cut(s)	5, 73, 81, 116, 206, 226, 403
CviKI_1	RGCY	7 cut(s)	5, 73, 81, 116, 206, 226, 403
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	282, 407
DpnII	GATC	2 cut(s)	280, 405
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	169, 180, 478
FaiI	YATR	8 cut(s)	167, 178, 273, 361, 363, 393, 476, 487
FatI	CATG	3 cut(s)	165, 176, 474
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	74, 227
FokI	GGATG	2 cut(s)	267, 302
Fsp4HI	GCNGC	2 cut(s)	74, 227
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	2 cut(s)	74, 227
HapII	CCGG	2 cut(s)	28, 48
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	169, 180, 478
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	33, 349
HindII	GTYRAC	2 cut(s)	33, 349
HinfI	GANTC	2 cut(s)	19, 54
HpaII	CCGG	2 cut(s)	28, 48
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	3 cut(s)	33, 163, 349
Hpy188I	TCNGA	2 cut(s)	9, 186
Hpy188III	TCNNGA	2 cut(s)	305, 322
Hpy8I	GTNNAC	3 cut(s)	33, 163, 349
HpyAV	CCTTC	2 cut(s)	129, 323
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	202, 443, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 212
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	169, 180, 478
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	280, 405
LmnI	GCTCC	3 cut(s)	10, 234, 400
Lsp1109I	GCAGC	2 cut(s)	60, 213
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	282, 407
MboI	GATC	2 cut(s)	280, 405
MboII	GAAGA	4 cut(s)	14, 117, 120, 122
MluCI	AATT	3 cut(s)	189, 338, 482
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	9 cut(s)	3, 63, 106, 133, 142, 145, 148, 151, 391
MseI	TTAA	1 cut(s)	192
MspI	CCGG	2 cut(s)	28, 48
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	44, 212
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	2 cut(s)	280, 405
NlaIII	CATG	3 cut(s)	169, 180, 478
NlaIV	GGNNCC	2 cut(s)	6, 266
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	180
PciI	ACATGT	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	19, 54
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	75, 228
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	6, 266
PstNI	CAGNNNCTG	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	74, 227
Sau3AI	GATC	2 cut(s)	280, 405
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	5 cut(s)	17, 83, 228, 253, 405
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	3 cut(s)	189, 338, 482
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	52, 321, 348
TasI	AATT	3 cut(s)	189, 338, 482
TfiI	GAWTC	2 cut(s)	19, 54
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	73, 226
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	2 cut(s)	348, 463
TspGWI	ACGGA	2 cut(s)	185, 398
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.