pycom11g22190

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
25201228 .. 25202243
1016 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22190.1

Sequence Viewer

Length: 354 bp
ATGGTGAATCAAACTTTATATGATAAAAGTGCCTGTGAGAAGGATGTAGAGGAAGCCGAGGGGAGGAGTAGCAGTCCAGTTACCCAGGAAAATAAAGGAAATCAAGCCAGAGTAAAAGAGGAAATTGTCGAATCCGAAACTGAAAACTACGATGCAGACTGCGAAAATAAAGGGACTATTGCTAGCAGAAGTGGTTGGGCAGAATTTAGTAACATGAACCAGATTTCAGTTGGGGACACTGTAATTTTTGAGTTTGTCAAGCAAAGCGTAATTCAGATTCATGTTTTCAGAGCAGTGAGAGGCAAGAGATGTGCTGTGGTACTAGGTGCCCCCAATGTGAAAAACGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

4.93

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 63
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
ApoI RAATTY 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 326
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 3 cut(s) 183, 323, 352
Bme1390I CCNGG 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 142
BmtI GCTAGC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 57, 84
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 57, 84
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 331
BshNI GGYRCC 1 cut(s) 326
BslFI GGGAC 2 cut(s) 187, 248
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 2 cut(s) 187, 248
Bsp1286I GDGCHC 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 328
BspOI GCTAGC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 57, 84
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 184
BstF5I GGATG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 237, 300
Cac8I GCNNGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 320
CviAII CATG 2 cut(s) 214, 281
CviJI RGCY 3 cut(s) 56, 107, 351
CviKI_1 RGCY 3 cut(s) 56, 107, 351
CviQI GTAC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 217, 284
FaiI YATR 4 cut(s) 19, 21, 215, 282
FaqI GGGAC 2 cut(s) 187, 248
FatI CATG 2 cut(s) 213, 280
FokI GGATG 1 cut(s) 56
FspBI CTAG 3 cut(s) 183, 323, 352
Hin1II CATG 2 cut(s) 217, 284
HinfI GANTC 3 cut(s) 7, 131, 277
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 136, 276, 290
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 155
Hsp92II CATG 2 cut(s) 217, 284
LpnPI CCDG 6 cut(s) 46, 71, 90, 98, 121, 233
LweI GCATC 1 cut(s) 142
MaeI CTAG 3 cut(s) 183, 323, 352
MaeIII GTNAC 2 cut(s) 79, 209
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 4 cut(s) 123, 203, 243, 270
MnlI CCTC 5 cut(s) 43, 52, 57, 112, 293
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 2 cut(s) 217, 284
NlaIV GGNNCC 1 cut(s) 328
NmeAIII GCCGAG 1 cut(s) 82
PfeI GAWTC 3 cut(s) 7, 131, 277
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 328
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 331
SetI ASST 2 cut(s) 328, 353
SfaNI GCATC 1 cut(s) 142
Sse9I AATT 4 cut(s) 123, 203, 243, 270
SspMI CTAG 3 cut(s) 183, 323, 352
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 129
TasI AATT 4 cut(s) 123, 203, 243, 270
TfiI GAWTC 3 cut(s) 7, 131, 277
TscAI CASTG 2 cut(s) 244, 300
TspDTI ATGAA 2 cut(s) 230, 269
TspRI CASTG 2 cut(s) 244, 300
XapI RAATTY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XspI CTAG 3 cut(s) 183, 323, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.