Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

26849969 .. 26851314

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCGTCGTATACCGCCCAAGTTTACCAAGAACCACATCCAACCATCACTTTGCAAATGTGTTCTTAGAGGCCTTAGTGGACAACGATGTGATGTGGAACTGGAAAGGAGAGAGAATGGCTTGTTCTTCCACAATCATGGTTGGCATCGCTTTGTGAACGATCATCGTCTACAATTTGGGGACTTTCTGGTTTTCTGTTATGATGGTCAATCGAAGTTTAAGGTTAAAATATATGATAGAACTTGTTGTGAGATAGATGTTGAAGTAGCCAAGAGGAGAAATGGCCTTCCTGCTGCTCCCTCGGCGAATGAAGGCTACCAATTAGCTTGGGTAAAAGATGAAATTGTTGACCTGAAAACCGAATACTACAACAGAGACGATACTGAAAATGCTGACAAGAGAAGGCGAAATAATCATATGTCTGGAAAGCCGCCGAGAGTTGAGGATGGTAAAGAAACATCAACTGGATCCATCATCTTCAAATCGGAGTATTCATGTTTTAAAGCAACTTTGACGACAAGGTGTTCACGATATAGGATGACGATTCCAAAGGATCTAGCCGTGACCAAAGGTCTTATGAGTAAGAAGACTATAGAAATTGAAGACTCAACTGGGAGATTGTGGCCTGCTAAACTTGTGAGTCTCACGTCTAAAGAGAACAATAAGACTTGCGGCTTGGCCATGTCAACAGGTTGGGGAGAATGTTCTAAAGCCAACAAGATTGCAGTTGGGGACACCGTTGTTTTTGAGTTTGTTAAACAAAGTGTAATTCGACTTCATATTTTTAGAAAAGGTCTAGGAACAAGAGGAGGCAATAATAGGCCTAACTCTGTGGTACTTGATGCCCCCAACATCAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

287

Amino Acids

32.71

Weight (kDa)

9.52

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	2 - 80	3.1e-14	B3 DNA binding domain
B3	PF02362	167 - 264	1.3e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	10, 169
AciI	CCGC	3 cut(s)	14, 431, 672
AclWI	GGATC	3 cut(s)	462, 475, 561
AcoI	YGGCCR	1 cut(s)	678
AfaI	GTAC	1 cut(s)	837
AgsI	TTSAA	3 cut(s)	263, 481, 602
AhdI	GACNNNNNGTC	1 cut(s)	570
AjiI	CACGTC	1 cut(s)	648
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	369, 647
AlwI	GGATC	3 cut(s)	462, 475, 561
AoxI	GGCC	5 cut(s)	70, 283, 623, 678, 821
ApeKI	GCWGC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	680
BamHI	GGATCC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	2 cut(s)	759, 791
BbsI	GAAGAC	2 cut(s)	593, 609
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	4 cut(s)	52, 197, 440, 479
BceAI	ACGGC	1 cut(s)	545
BcoDI	GTCTC	2 cut(s)	369, 647
BfaI	CTAG	2 cut(s)	557, 797
BfmI	CTRYAG	1 cut(s)	591
BisI	GCNGC	3 cut(s)	294, 431, 673
BlsI	GCNGC	3 cut(s)	295, 432, 674
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmgBI	CACGTC	1 cut(s)	648
BmiI	GGNNCC	1 cut(s)	469
BmrI	ACTGGG	1 cut(s)	621
BmsI	GCATC	2 cut(s)	154, 832
BmuI	ACTGGG	1 cut(s)	621
BpiI	GAAGAC	2 cut(s)	593, 609
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	3 cut(s)	105, 469, 616
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	36, 451, 543
BseNI	ACTGG	3 cut(s)	105, 469, 616
BseRI	GAGGAG	2 cut(s)	289, 822
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	5 cut(s)	72, 285, 625, 680, 823
BslFI	GGGAC	2 cut(s)	194, 746
BsmAI	GTCTC	2 cut(s)	369, 647
BsmBI	CGTCTC	1 cut(s)	369
BsmFI	GGGAC	2 cut(s)	194, 746
BsnI	GGCC	5 cut(s)	72, 285, 625, 680, 823
Bsp143I	GATC	3 cut(s)	160, 467, 553
BspACI	CCGC	3 cut(s)	14, 431, 672
BspANI	GGCC	5 cut(s)	72, 285, 625, 680, 823
BspLI	GGNNCC	1 cut(s)	469
BspPI	GGATC	3 cut(s)	462, 475, 561
BsrI	ACTGG	3 cut(s)	105, 469, 616
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	3 cut(s)	160, 467, 553
BssNAI	GTATAC	1 cut(s)	11
Bst1107I	GTATAC	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	2 cut(s)	65, 74
BstF5I	GGATG	3 cut(s)	36, 451, 543
BstKTI	GATC	3 cut(s)	163, 470, 556
BstMAI	GTCTC	2 cut(s)	369, 647
BstMBI	GATC	3 cut(s)	160, 467, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSFI	CTRYAG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	2 cut(s)	593, 609
BstX2I	RGATCY	2 cut(s)	467, 553
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	2 cut(s)	467, 553
BstZ17I	GTATAC	1 cut(s)	11
BsuRI	GGCC	5 cut(s)	72, 285, 625, 680, 823
BtgZI	GCGATG	1 cut(s)	131
BtrI	CACGTC	1 cut(s)	648
BtsCI	GGATG	3 cut(s)	36, 451, 543
Cac8I	GCNNGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	836
CviAII	CATG	3 cut(s)	137, 495, 682
CviQI	GTAC	1 cut(s)	836
DdeI	CTNAG	2 cut(s)	65, 74
DpnI	GATC	3 cut(s)	162, 469, 555
DpnII	GATC	3 cut(s)	160, 467, 553
DraI	TTTAAA	1 cut(s)	502
DriI	GACNNNNNGTC	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	678
Eam1105I	GACNNNNNGTC	1 cut(s)	570
Eco147I	AGGCCT	2 cut(s)	72, 823
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	3 cut(s)	140, 498, 685
FaqI	GGGAC	2 cut(s)	194, 746
FatI	CATG	3 cut(s)	136, 494, 681
FauNDI	CATATG	1 cut(s)	417
FblI	GTMKAC	2 cut(s)	10, 169
Fnu4HI	GCNGC	3 cut(s)	294, 431, 673
FokI	GGATG	3 cut(s)	23, 458, 550
Fsp4HI	GCNGC	3 cut(s)	294, 431, 673
FspBI	CTAG	2 cut(s)	557, 797
GluI	GCNGC	3 cut(s)	294, 431, 673
HaeIII	GGCC	5 cut(s)	72, 285, 625, 680, 823
Hin1II	CATG	3 cut(s)	140, 498, 685
HincII	GTYRAC	2 cut(s)	349, 687
HindII	GTYRAC	2 cut(s)	349, 687
HinfI	GANTC	3 cut(s)	544, 605, 640
Hpy166II	GTNNAC	8 cut(s)	11, 24, 80, 157, 170, 349, 527, 687
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	423, 528, 856
Hpy8I	GTNNAC	8 cut(s)	11, 24, 80, 157, 170, 349, 527, 687
Hpy99I	CGWCG	1 cut(s)	9
HpyAV	CCTTC	3 cut(s)	296, 305, 396
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	2 cut(s)	54, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	65, 74
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	3 cut(s)	140, 498, 685
Kzo9I	GATC	3 cut(s)	160, 467, 553
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	9 cut(s)	86, 173, 303, 365, 408, 450, 597, 639, 675
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	154, 832
MaeI	CTAG	2 cut(s)	557, 797
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	1 cut(s)	562
MalI	GATC	3 cut(s)	162, 469, 555
MboI	GATC	3 cut(s)	160, 467, 553
MboII	GAAGA	4 cut(s)	118, 469, 598, 614
MflI	RGATCY	2 cut(s)	467, 553
MlsI	TGGCCA	1 cut(s)	680
MluCI	AATT	5 cut(s)	173, 320, 342, 597, 768
MluNI	TGGCCA	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	599, 649
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	62, 267, 310, 436, 800, 803
Mox20I	TGGCCA	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	680
MseI	TTAA	4 cut(s)	219, 225, 501, 756
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	3 cut(s)	160, 467, 553
NlaIII	CATG	3 cut(s)	140, 498, 685
NlaIV	GGNNCC	1 cut(s)	469
NmeAIII	GCCGAG	2 cut(s)	281, 459
NmuCI	GTSAC	1 cut(s)	562
PceI	AGGCCT	2 cut(s)	72, 823
PfeI	GAWTC	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	295, 432, 674
PleI	GAGTC	2 cut(s)	599, 648
PpsI	GAGTC	2 cut(s)	599, 648
PspN4I	GGNNCC	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	467, 553
RsaI	GTAC	1 cut(s)	837
RsaNI	GTAC	1 cut(s)	836
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	4 cut(s)	219, 225, 501, 756
SatI	GCNGC	3 cut(s)	294, 431, 673
Sau3AI	GATC	3 cut(s)	160, 467, 553
SchI	GAGTC	2 cut(s)	599, 649
SetI	ASST	8 cut(s)	225, 328, 354, 524, 574, 650, 694, 796
SfaNI	GCATC	2 cut(s)	154, 832
SfcI	CTRYAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	5 cut(s)	173, 320, 342, 597, 768
SseBI	AGGCCT	2 cut(s)	72, 823
SsiI	CCGC	3 cut(s)	14, 431, 672
SspMI	CTAG	2 cut(s)	557, 797
StuI	AGGCCT	2 cut(s)	72, 823
TaaI	ACNGT	1 cut(s)	739
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	2 cut(s)	212, 772
TasI	AATT	5 cut(s)	173, 320, 342, 597, 768
TauI	GCSGC	2 cut(s)	433, 675
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	4 cut(s)	219, 225, 501, 756
Tru9I	TTAA	4 cut(s)	219, 225, 501, 756
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	4 cut(s)	324, 354, 483, 767
XmiI	GTMKAC	2 cut(s)	10, 169
XspI	CTAG	2 cut(s)	557, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.