Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

26970865 .. 26972398

Gene Structure 1534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGCTTGAAGAAAGACCATCGTTTTTCAAGGTCCTTGTTGGTGACTTCTCCCGGCAACTGCGTATACCACGTGCGTTTGTGAAGAACTTCAATGGTCGTGTACCACGAATGTGTGGCCTTAGAGGCCCTTGTGGAAACTTGTGGGCTGTGAATTTAAAAGAGATCAAGGATCGCGTGGTTTTCCATAATGGTTGGCAGAGTTTTGCAAAGCATCATTTTCTGGAAGTTGGGGATTTCTTGACTTTCACTAAAGATGATGGTTCAATTTTTGATGTCATAATTTATGATAAAAGCTACTGTGAGAAGAATGTTGAAACAGCCAAGAGCAGGATTGGCAATGTTGTGGACAGAACAATTAACAACCACATCATTTTAGGAAAGAGACCTGCACTTGATCTTGTGGAAGAAACATCTATTGGATCCATCTCTTTCAATCCGGAGAATCCATTTTTTACTACTATTTTTACGAGGTATACTCGATATGACCTGAGAATTCCAAGCAAAGTAGTCATAGCTGCAGGTCTTATGAACAATAAAACTATAATGCTTCAAGATCCAACTGGGAGGTCATGGTCTATTAAACTCAACGAAACACCAAGGGGTCAAATGCGTATGGAAGGCTGGTGTAATGTTTGCAAAGAGAACCAAATTTCATTTGGAGACACCCTTGTTATTGAGGTAGTCAAGCATTCTGTACTTCAACTCCATGTTTATAAAGTAGGAGCAGCCCTGGATGTCGAAACTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

251

Amino Acids

28.69

Weight (kDa)

8.94

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 91	9.7e-14	B3 DNA binding domain
B3	PF02362	159 - 238	1.9e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	717
Acc36I	ACCTGC	2 cut(s)	397, 512
AccI	GTMKAC	2 cut(s)	67, 476
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	439
AclWI	GGATC	4 cut(s)	180, 417, 430, 551
AcsI	RAATTY	3 cut(s)	154, 495, 651
AcvI	CACGTG	1 cut(s)	74
AfaI	GTAC	2 cut(s)	105, 699
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	8 cut(s)	11, 31, 94, 267, 317, 436, 554, 704
AjnI	CCWGG	1 cut(s)	732
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AleI	CACNNNNGTG	1 cut(s)	112
AluBI	AGCT	4 cut(s)	7, 297, 518, 753
AluI	AGCT	4 cut(s)	7, 297, 518, 753
Alw26I	GTCTC	2 cut(s)	379, 657
AlwI	GGATC	4 cut(s)	180, 417, 430, 551
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	118, 127
ApeKI	GCWGC	2 cut(s)	518, 728
ApoI	RAATTY	3 cut(s)	154, 495, 651
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	34, 128
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	422
BbrPI	CACGTG	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	505, 740
BccI	CCATC	3 cut(s)	28, 254, 434
BciT130I	CCWGG	1 cut(s)	734
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	379, 657
BfaI	CTAG	1 cut(s)	754
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	2 cut(s)	397, 512
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	519, 729
BlsI	GCNGC	2 cut(s)	520, 730
Bme1390I	CCNGG	2 cut(s)	55, 734
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 128
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	2 cut(s)	55, 734
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	573
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	2 cut(s)	599, 732
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	346
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	2 cut(s)	599, 732
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	568
BseXI	GCAGC	2 cut(s)	505, 740
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	120, 129
BsiSI	CCGG	2 cut(s)	55, 440
BslI	CCNNNNNNNGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	379, 657
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	2 cut(s)	120, 129
Bso31I	GGTCTC	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	5 cut(s)	165, 172, 397, 422, 556
BspANI	GGCC	2 cut(s)	120, 129
BspCNI	CTCAG	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	2 cut(s)	397, 512
BspPI	GGATC	4 cut(s)	180, 417, 430, 551
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	599, 732
BssMI	GATC	5 cut(s)	165, 172, 397, 422, 556
BssNAI	GTATAC	2 cut(s)	68, 477
BssT1I	CCWWGG	1 cut(s)	599
Bst1107I	GTATAC	2 cut(s)	68, 477
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	122, 491
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	5 cut(s)	168, 175, 400, 425, 559
BstMAI	GTCTC	2 cut(s)	379, 657
BstMBI	GATC	5 cut(s)	165, 172, 397, 422, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 336
BstNI	CCWGG	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	53, 732
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	505, 740
BstX2I	RGATCY	2 cut(s)	422, 556
BstYI	RGATCY	2 cut(s)	422, 556
BstZ17I	GTATAC	2 cut(s)	68, 477
BsuRI	GGCC	2 cut(s)	120, 129
BtsCI	GGATG	1 cut(s)	742
BveI	ACCTGC	2 cut(s)	397, 512
Cfr13I	GGNCC	2 cut(s)	34, 128
Csp6I	GTAC	2 cut(s)	104, 698
CviAII	CATG	2 cut(s)	573, 710
CviQI	GTAC	2 cut(s)	104, 698
DdeI	CTNAG	2 cut(s)	122, 491
DpnI	GATC	5 cut(s)	167, 174, 399, 424, 558
DpnII	GATC	5 cut(s)	165, 172, 397, 422, 556
DraI	TTTAAA	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	34, 128
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	2 cut(s)	576, 713
FatI	CATG	2 cut(s)	572, 709
FblI	GTMKAC	2 cut(s)	67, 476
Fnu4HI	GCNGC	2 cut(s)	519, 729
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	2 cut(s)	519, 729
FspBI	CTAG	1 cut(s)	754
GluI	GCNGC	2 cut(s)	519, 729
HaeIII	GGCC	2 cut(s)	120, 129
HapII	CCGG	2 cut(s)	55, 440
Hin1II	CATG	2 cut(s)	576, 713
HinfI	GANTC	1 cut(s)	445
HpaII	CCGG	2 cut(s)	55, 440
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	4 cut(s)	68, 104, 349, 477
Hpy188III	TCNNGA	4 cut(s)	224, 241, 440, 554
Hpy8I	GTNNAC	4 cut(s)	68, 104, 349, 477
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	4 cut(s)	209, 392, 521, 639
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 336
HpyF3I	CTNAG	2 cut(s)	122, 491
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	2 cut(s)	576, 713
Kpn2I	TCCGGA	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	165, 172, 397, 422, 556
LmnI	GCTCC	2 cut(s)	4, 725
Lsp1109I	GCAGC	2 cut(s)	505, 740
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	754
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	5 cut(s)	167, 174, 399, 424, 558
MboI	GATC	5 cut(s)	165, 172, 397, 422, 556
MboII	GAAGA	4 cut(s)	23, 97, 319, 419
MflI	RGATCY	2 cut(s)	422, 556
MluCI	AATT	6 cut(s)	154, 267, 282, 357, 495, 651
MmeI	TCCRAC	1 cut(s)	584
MnlI	CCTC	4 cut(s)	119, 465, 561, 673
MroI	TCCGGA	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	3 cut(s)	158, 360, 582
MslI	CAYNNNNRTG	1 cut(s)	112
MspI	CCGG	2 cut(s)	55, 440
MspR9I	CCNGG	2 cut(s)	55, 734
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	1 cut(s)	734
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	126, 336
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	5 cut(s)	165, 172, 397, 422, 556
NlaIII	CATG	2 cut(s)	576, 713
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	2 cut(s)	520, 730
PmaCI	CACGTG	1 cut(s)	74
PmlI	CACGTG	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	732
PspCI	CACGTG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	2 cut(s)	34, 128
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	422, 556
RsaI	GTAC	2 cut(s)	105, 699
RsaNI	GTAC	2 cut(s)	104, 698
RseI	CAYNNNNRTG	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	158, 360, 582
SatI	GCNGC	2 cut(s)	519, 729
Sau3AI	GATC	5 cut(s)	165, 172, 397, 422, 556
Sau96I	GGNCC	2 cut(s)	34, 128
ScrFI	CCNGG	2 cut(s)	55, 734
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	519
SfiI	GGCCNNNNNGGCC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	112
Sse9I	AATT	6 cut(s)	154, 267, 282, 357, 495, 651
SspMI	CTAG	1 cut(s)	754
StyD4I	CCNGG	2 cut(s)	53, 732
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	481, 741
TasI	AATT	6 cut(s)	154, 267, 282, 357, 495, 651
TatI	WGTACW	1 cut(s)	697
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	3 cut(s)	158, 360, 582
Tru9I	TTAA	3 cut(s)	158, 360, 582
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	518, 728
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	545, 645
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	3 cut(s)	154, 495, 651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmiI	GTMKAC	2 cut(s)	67, 476
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.