Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00324

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

29227 .. 29961

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

CGTATACCACGTGCGTTTGTGAAGAACTTCAATGGTTGTGTACCAGGAATGTGTGGCCTTAGAGGCCCTTGTGGAAACCTGTGGGCTGTGAATTTAAAAGAGATCGAGGGTCGCCTTCATTTTCTGGAAGTTAGGGATTTCTTGACTTTCACTAAAGATGGTGGATCAATTTTTGATGTCATAATTTATGGTAAAAGCGCAAGAAGAATGTTGAAGCACCAAGAGCAGGATTGGCAATACAACCAAGTCATTTTAGGAAAGAGACCTGCACTTGATCTTGTTGAAGAAACATCTATTGGACCCGTCTCCTTCAATCCGGAGAATCCATTTTTTACTACTATTTTTTCAAGAATTCAGACCAGAGTAGTCATAGCTGCAGGTCTTATGAGCAATGAAACTATAATGCTTCAAGATCCAGCTGGGAGGCCATGGTCTATTAAACTCAAAGAAACGACAAGGGGTCGATTTGCGTATGGAAGGCTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

162

Amino Acids

18.39

Weight (kDa)

9.66

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	274, 368
AccI	GTMKAC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	316
AclWI	GGATC	2 cut(s)	172, 407
AcsI	RAATTY	2 cut(s)	91, 351
AcvI	CACGTG	1 cut(s)	11
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	6 cut(s)	31, 214, 284, 313, 348, 410
AhdI	GACNNNNNGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	374, 419
AluI	AGCT	2 cut(s)	374, 419
Alw26I	GTCTC	2 cut(s)	256, 310
AlwI	GGATC	2 cut(s)	172, 407
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	3 cut(s)	55, 64, 425
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	91, 351
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	65, 299
AvaII	GGWCC	1 cut(s)	299
BbrPI	CACGTG	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	256, 310
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	2 cut(s)	274, 368
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	299
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	65, 299
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	397
BseAI	TCCGGA	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	57, 66, 427
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	2 cut(s)	256, 310
BsmBI	CGTCTC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	57, 66, 427
Bso31I	GGTCTC	1 cut(s)	256
Bsp13I	TCCGGA	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	102, 164, 274, 412
Bsp19I	CCATGG	1 cut(s)	428
BspANI	GGCC	3 cut(s)	57, 66, 427
BspEI	TCCGGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	2 cut(s)	274, 368
BspPI	GGATC	2 cut(s)	172, 407
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	4 cut(s)	102, 164, 274, 412
BssNAI	GTATAC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	428
Bst1107I	GTATAC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	4 cut(s)	105, 167, 277, 415
BstMAI	GTCTC	2 cut(s)	256, 310
BstMBI	GATC	4 cut(s)	102, 164, 274, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 223, 232
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZ17I	GTATAC	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	57, 66, 427
BtgI	CCRYGG	1 cut(s)	428
BveI	ACCTGC	2 cut(s)	274, 368
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	65, 299
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	7 cut(s)	57, 66, 86, 374, 419, 427, 481
CviKI_1	RGCY	7 cut(s)	57, 66, 86, 374, 419, 427, 481
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	4 cut(s)	104, 166, 276, 414
DpnII	GATC	4 cut(s)	102, 164, 274, 412
DraI	TTTAAA	1 cut(s)	96
DriI	GACNNNNNGTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	299
Eco72I	CACGTG	1 cut(s)	11
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	1 cut(s)	432
FaiI	YATR	8 cut(s)	5, 182, 189, 371, 386, 401, 430, 474
FatI	CATG	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	375
Fsp4HI	GCNGC	1 cut(s)	375
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	3 cut(s)	57, 66, 427
HapII	CCGG	1 cut(s)	317
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	1 cut(s)	317
Hpy166II	GTNNAC	2 cut(s)	5, 41
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	5 cut(s)	125, 142, 317, 348, 410
Hpy8I	GTNNAC	2 cut(s)	5, 41
HpyAV	CCTTC	3 cut(s)	125, 319, 471
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	269, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 223, 232
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	1 cut(s)	432
HspAI	GCGC	1 cut(s)	198
Kpn2I	TCCGGA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	102, 164, 274, 412
Lsp1109I	GCAGC	1 cut(s)	361
MaeII	ACGT	1 cut(s)	10
MalI	GATC	4 cut(s)	104, 166, 276, 414
MboI	GATC	4 cut(s)	102, 164, 274, 412
MboII	GAAGA	3 cut(s)	34, 216, 296
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	4 cut(s)	91, 168, 183, 351
MnlI	CCTC	3 cut(s)	56, 100, 417
MroI	TCCGGA	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	26
MseI	TTAA	2 cut(s)	95, 438
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	3 cut(s)	63, 223, 232
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	4 cut(s)	102, 164, 274, 412
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	376
PmaCI	CACGTG	1 cut(s)	11
PmlI	CACGTG	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	11
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	2 cut(s)	65, 299
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	412
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	95, 438
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	102, 164, 274, 412
Sau96I	GGNCC	2 cut(s)	65, 299
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	13, 81, 268, 376, 382, 421
SfcI	CTRYAG	1 cut(s)	375
SfiI	GGCCNNNNNGGCC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	299
Sse9I	AATT	4 cut(s)	91, 168, 183, 351
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	428
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	105, 463
TasI	AATT	4 cut(s)	91, 168, 183, 351
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	95, 438
Tru9I	TTAA	2 cut(s)	95, 438
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	107, 408
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	2 cut(s)	91, 351
XmiI	GTMKAC	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.