pycom03g17770

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000210
Physical Location & Seq
Reverse (-)
18867495 .. 18871974
4480 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17770.1

Sequence Viewer

Length: 378 bp
ATGGCACGGAAGGGTCCTCGGAAGAAACAATCGTTTTTCAAGGTCCTACTTGGTGATTTCTCTAAGCATCTGCAAAATGCTTGCCCAGGCCAATCATCCTCTTCGTATCCATGTCCTACCTTTCCCATTTGCGAGTGGTTGACCATTACCGTTGCGGAGCATGGAAATTATCTGATTATATTCCTCGGTAGTGAAAGTTGGACCGTTGGAAGTGGTTGGTGCAGCAGGCTTGGTGATCTCGGCATTATGGACTGCTGCTTTCCTGTTCTTAGGCTTCACATTTTTGCCATGCCACTTGTGGCCCACTGGAAACCCAATGATGTAATAGCATCTGTCTACCAAGTGCCCATCTCCATCACAGTAAGTGCACTTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

126

Amino Acids

13.86

Weight (kDa)

8.82

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 336
AciI CCGC 1 cut(s) 155
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 85
AleI CACNNNNGTG 1 cut(s) 373
Alw21I GWGCWC 1 cut(s) 370
Alw44I GTGCAC 1 cut(s) 366
AoxI GGCC 2 cut(s) 88, 300
ApaLI GTGCAC 1 cut(s) 366
ApeKI GCWGC 2 cut(s) 222, 255
AspS9I GGNCC 4 cut(s) 14, 43, 201, 301
AsuHPI GGTGA 2 cut(s) 65, 245
AvaII GGWCC 3 cut(s) 14, 43, 201
BaeGI GKGCMC 2 cut(s) 348, 370
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 234, 242
BccI CCATC 2 cut(s) 356, 362
BciT130I CCWGG 1 cut(s) 87
BciVI GTATCC 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 371
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 2 cut(s) 223, 256
BlsI GCNGC 2 cut(s) 224, 257
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 3 cut(s) 14, 43, 201
BmgT120I GGNCC 4 cut(s) 14, 43, 201, 301
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 76, 338
BsaJI CCNNGG 3 cut(s) 17, 85, 184
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 3 cut(s) 17, 85, 184
BseGI GGATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 311
BseSI GKGCMC 2 cut(s) 348, 370
BseXI GCAGC 2 cut(s) 234, 242
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 2 cut(s) 90, 302
BsiHKAI GWGCWC 1 cut(s) 370
BsnI GGCC 2 cut(s) 90, 302
Bsp1286I GDGCHC 2 cut(s) 348, 370
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 155
BspANI GGCC 2 cut(s) 90, 302
BspLI GGNNCC 1 cut(s) 15
BspTI CTTAAG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 17, 85, 184
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 3 cut(s) 151, 205, 361
Bst6I CTCTTC 1 cut(s) 106
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 2 cut(s) 82, 227
BstDEI CTNAG 2 cut(s) 63, 269
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstSLI GKGCMC 2 cut(s) 348, 370
BstV1I GCAGC 2 cut(s) 234, 242
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 90, 302
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 82, 227
Cfr13I GGNCC 4 cut(s) 14, 43, 201, 301
CviAII CATG 3 cut(s) 111, 161, 289
CviJI RGCY 4 cut(s) 90, 229, 274, 302
CviKI_1 RGCY 4 cut(s) 90, 229, 274, 302
DdeI CTNAG 2 cut(s) 63, 269
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco47I GGWCC 3 cut(s) 14, 43, 201
EcoO109I RGGNCCY 2 cut(s) 14, 43
EcoRII CCWGG 1 cut(s) 85
FaeI CATG 3 cut(s) 114, 164, 292
FaiI YATR 5 cut(s) 112, 162, 179, 248, 290
FatI CATG 3 cut(s) 110, 160, 288
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 223, 256
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 223, 256
GluI GCNGC 2 cut(s) 223, 256
HaeIII GGCC 2 cut(s) 90, 302
Hin1II CATG 3 cut(s) 114, 164, 292
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HphI GGTGA 2 cut(s) 65, 245
Hpy166II GTNNAC 3 cut(s) 141, 337, 368
Hpy188I TCNGA 2 cut(s) 21, 174
Hpy8I GTNNAC 3 cut(s) 141, 337, 368
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 3 cut(s) 151, 205, 361
HpyCH4V TGCA 3 cut(s) 73, 222, 368
HpyF3I CTNAG 2 cut(s) 63, 269
Hsp92II CATG 3 cut(s) 114, 164, 292
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 5 cut(s) 72, 99, 211, 276, 292
Lsp1109I GCAGC 2 cut(s) 234, 242
LweI GCATC 2 cut(s) 76, 338
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 2 cut(s) 34, 93
MhlI GDGCHC 2 cut(s) 348, 370
MluCI AATT 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 179, 187
MnlI CCTC 3 cut(s) 27, 109, 194
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 373
MspCI CTTAAG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 87
NdeII GATC 1 cut(s) 235
NlaIII CATG 3 cut(s) 114, 164, 292
NlaIV GGNNCC 1 cut(s) 15
NmeAIII GCCGAG 1 cut(s) 219
OliI CACNNNNGTG 1 cut(s) 373
PkrI GCNGC 2 cut(s) 224, 257
PpuMI RGGWCCY 2 cut(s) 14, 43
Psp5II RGGWCCY 2 cut(s) 14, 43
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 15
PspPI GGNCC 4 cut(s) 14, 43, 201, 301
PspPPI RGGWCCY 2 cut(s) 14, 43
RseI CAYNNNNRTG 1 cut(s) 373
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 2 cut(s) 223, 256
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 4 cut(s) 14, 43, 201, 301
ScrFI CCNGG 1 cut(s) 87
SduI GDGCHC 2 cut(s) 348, 370
SetI ASST 2 cut(s) 45, 122
SfaNI GCATC 2 cut(s) 76, 338
SinI GGWCC 3 cut(s) 14, 43, 201
SmiMI CAYNNNNRTG 1 cut(s) 373
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 166
SsiI CCGC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 85
TaaI ACNGT 3 cut(s) 151, 205, 361
TasI AATT 1 cut(s) 166
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 1 cut(s) 311
TseI GCWGC 2 cut(s) 222, 255
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 371
VneI GTGCAC 1 cut(s) 366
VpaK11BI GGWCC 3 cut(s) 14, 43, 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.