Rh5AG227900

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000210
Physical Location & Seq
Forward (+)
27395310 .. 27406029
10720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG227900.1

Sequence Viewer

Length: 966 bp
ATGGATGAGATGAGGGGGAGGGTCGCTAGATGGCTGCGGGGTGGTGCACAAGGCACTAATATGGCGGCTTTGGAAGCTTGGAGGTGCGGCTTAGAGAGCACGCTTAGGGTTTTTGTTATTAGCTTACCTACTAGTAGCAAAAGGTTGAAATGGGTAGGAACTAGGAAGCCAACTAAGCGTTCTCCAAAGAAACAATCATTTTTCAAGATTCTGCTTGGTGACTTTTCTAAGCATCTGAGGATACCACCTAAGTTTTCCAAGAACCACATTCGACCATCACTTGGAAAATGTGGTCTTAGAGGCCCTAGTGGAAAATGCTGGAATGTGGAACTGGAAAGAACAGAGAATGGCTTGTTCTTTCACAATGATGGTTGGCAGACTTTTGTGAAGGATCACCTTTTACAAGTTGGGGACTTTTTGGTTTTCCGTTACGACGGTGAATCAAATTTTGAGGTTACATTATATGATAGAACTTGTTGTGAGAAAGATGTTAAAGTACCCAAGAGGAGAAGGGGCCGTCCTGCGGCGAATGAAAGAAACTCAGCTCAAGTTATTAACCTTGAAACCGAAAACTACAACAAAAAAGCTGAAAAGAAAACCAGCATTGATGGCAGAAGAAGTCGAAATTATGTCATGCCAGGGAAGGGGATTAGATGTGAGGGTGTGAATCAAACATCAAATGGATCCATCTTGTTCAAATCGGAGAATTCATATTTGAAACTAACTTTGAAGAGAAAGGCTCAACAATATGTGGTGGCAATTGAAGTAGCCATAACTGAAGGTCTTATGCATAAGAAGACTGTAGAAATTCAAGACCCAACTGGCAGATCATGGCCTACTAAACTTGTGACAGTTACAAGTAAACAACAGAACCGTTGGAGTAATGATCGCTTGGACATGTCAACTGGTTGGAGTGAATGTTGTAAAGCTAACAAGATTTCCGCTGGGGACAACTGTCATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

321

Amino Acids

36.68

Weight (kDa)

9.96

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 67 - 156 2.3e-16 B3 DNA binding domain
B3 PF02362 264 - 321 7.3e-08 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AciI CCGC 5 cut(s) 37, 65, 87, 524, 942
AclWI GGATC 3 cut(s) 399, 678, 691
AcsI RAATTY 3 cut(s) 445, 706, 807
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 3 cut(s) 281, 523, 644
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 8 cut(s) 148, 205, 563, 697, 718, 730, 764, 812
AhlI ACTAGT 1 cut(s) 131
AjnI CCWGG 1 cut(s) 637
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 5 cut(s) 77, 123, 545, 587, 929
AluI AGCT 5 cut(s) 77, 123, 545, 587, 929
Alw21I GWGCWC 2 cut(s) 49, 101
Alw44I GTGCAC 1 cut(s) 45
AlwI GGATC 3 cut(s) 399, 678, 691
AoxI GGCC 3 cut(s) 301, 514, 833
ApaLI GTGCAC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 3 cut(s) 445, 706, 807
AspS9I GGNCC 2 cut(s) 302, 514
AsuHPI GGTGA 3 cut(s) 230, 386, 449
BaeGI GKGCMC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 803
Bbv12I GWGCWC 2 cut(s) 49, 101
BbvI GCAGC 1 cut(s) 21
BccI CCATC 5 cut(s) 24, 283, 362, 602, 695
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 1 cut(s) 234
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 4 cut(s) 27, 132, 162, 306
BfmI CTRYAG 1 cut(s) 801
BfuI GTATCC 1 cut(s) 234
BisI GCNGC 4 cut(s) 35, 66, 88, 525
BlsI GCNGC 4 cut(s) 36, 67, 89, 526
Bme1390I CCNGG 1 cut(s) 639
BmgT120I GGNCC 2 cut(s) 302, 514
BmiI GGNNCC 2 cut(s) 515, 685
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 1 cut(s) 241
BoxI GACNNNNGTC 1 cut(s) 954
BpiI GAAGAC 1 cut(s) 803
BplI GAGNNNNNCTC 2 cut(s) 724, 756
Bpu10I CCTNAGC 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 638
BsaXI ACNNNNNCTCC 2 cut(s) 904, 934
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 523, 644
Bse1I ACTGG 3 cut(s) 336, 826, 910
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 1 cut(s) 638
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 281, 523, 644
BseMII CTCAG 2 cut(s) 227, 555
BseNI ACTGG 3 cut(s) 336, 826, 910
BseRI GAGGAG 1 cut(s) 520
BseSI GKGCMC 1 cut(s) 49
BseXI GCAGC 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 944
BshFI GGCC 3 cut(s) 303, 516, 835
BsiHKAI GWGCWC 2 cut(s) 49, 101
BslFI GGGAC 2 cut(s) 425, 962
BslI CCNNNNNNNGG 3 cut(s) 281, 523, 644
BsmFI GGGAC 2 cut(s) 425, 962
BsnI GGCC 3 cut(s) 303, 516, 835
Bsp1286I GDGCHC 2 cut(s) 49, 101
Bsp143I GATC 4 cut(s) 391, 683, 827, 886
BspACI CCGC 5 cut(s) 37, 65, 87, 524, 942
BspANI GGCC 3 cut(s) 303, 516, 835
BspCNI CTCAG 2 cut(s) 228, 554
BspLI GGNNCC 2 cut(s) 515, 685
BspPI GGATC 3 cut(s) 399, 678, 691
BsrI ACTGG 3 cut(s) 336, 826, 910
BssECI CCNNGG 1 cut(s) 638
BssMI GATC 4 cut(s) 391, 683, 827, 886
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 5 cut(s) 437, 802, 853, 875, 956
Bst6I CTCTTC 1 cut(s) 725
BstC8I GCNNGC 1 cut(s) 101
BstDEI CTNAG 8 cut(s) 91, 104, 174, 228, 236, 249, 296, 541
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 4 cut(s) 394, 686, 830, 889
BstMBI GATC 4 cut(s) 391, 683, 827, 886
BstMWI GCNNNNNNNGC 4 cut(s) 74, 96, 175, 609
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 1 cut(s) 901
BstPAI GACNNNNGTC 1 cut(s) 954
BstSCI CCNGG 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 801
BstSLI GKGCMC 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 803
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuI GTATCC 1 cut(s) 234
BsuRI GGCC 3 cut(s) 303, 516, 835
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 302, 514
Csp6I GTAC 1 cut(s) 497
CviAII CATG 3 cut(s) 634, 831, 898
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 8 cut(s) 91, 104, 174, 228, 236, 249, 296, 541
DpnI GATC 4 cut(s) 393, 685, 829, 888
DpnII GATC 4 cut(s) 391, 683, 827, 886
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 798
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 706
EcoRII CCWGG 1 cut(s) 637
EcoT22I ATGCAT 1 cut(s) 792
FaeI CATG 3 cut(s) 637, 834, 901
FaqI GGGAC 2 cut(s) 425, 962
FatI CATG 3 cut(s) 633, 830, 897
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 4 cut(s) 35, 66, 88, 525
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 35, 66, 88, 525
FspBI CTAG 4 cut(s) 27, 132, 162, 306
GluI GCNGC 4 cut(s) 35, 66, 88, 525
GsaI CCCAGC 1 cut(s) 948
HaeIII GGCC 3 cut(s) 303, 516, 835
Hin1II CATG 3 cut(s) 637, 834, 901
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 3 cut(s) 208, 440, 667
HphI GGTGA 3 cut(s) 230, 386, 449
Hpy166II GTNNAC 3 cut(s) 47, 863, 903
Hpy188I TCNGA 2 cut(s) 237, 703
Hpy188III TCNNGA 2 cut(s) 205, 812
Hpy8I GTNNAC 3 cut(s) 47, 863, 903
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 4 cut(s) 382, 504, 637, 773
HpyCH4III ACNGT 5 cut(s) 437, 802, 853, 875, 956
HpyCH4V TGCA 2 cut(s) 47, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 96, 175, 609
HpyF3I CTNAG 8 cut(s) 91, 104, 174, 228, 236, 249, 296, 541
Hsp92II CATG 3 cut(s) 637, 834, 901
Kzo9I GATC 4 cut(s) 391, 683, 827, 886
LpnPI CCDG 9 cut(s) 304, 317, 534, 613, 624, 651, 807, 891, 930
Lsp1109I GCAGC 1 cut(s) 21
LweI GCATC 1 cut(s) 241
MaeI CTAG 4 cut(s) 27, 132, 162, 306
MaeIII GTNAC 5 cut(s) 218, 428, 454, 847, 853
MalI GATC 4 cut(s) 393, 685, 829, 888
MboI GATC 4 cut(s) 391, 683, 827, 886
MboII GAAGA 3 cut(s) 627, 742, 808
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 2 cut(s) 49, 101
MluCI AATT 5 cut(s) 445, 625, 706, 759, 807
MmeI TCCRAC 2 cut(s) 857, 890
MnlI CCTC 8 cut(s) 6, 12, 75, 231, 293, 445, 498, 652
Mph1103I ATGCAT 1 cut(s) 792
MseI TTAA 2 cut(s) 492, 555
MslI CAYNNNNRTG 2 cut(s) 59, 366
MspA1I CMGCKG 1 cut(s) 944
MspR9I CCNGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 759
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 4 cut(s) 74, 96, 175, 609
NdeII GATC 4 cut(s) 391, 683, 827, 886
NlaIII CATG 3 cut(s) 637, 834, 901
NlaIV GGNNCC 2 cut(s) 515, 685
NmuCI GTSAC 2 cut(s) 218, 847
NsiI ATGCAT 1 cut(s) 792
NspI RCATGY 1 cut(s) 901
PciI ACATGT 1 cut(s) 897
PfeI GAWTC 3 cut(s) 208, 440, 667
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 4 cut(s) 36, 67, 89, 526
PscI ACATGT 1 cut(s) 897
PshAI GACNNNNGTC 1 cut(s) 954
Psp6I CCWGG 1 cut(s) 637
PspFI CCCAGC 1 cut(s) 944
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 2 cut(s) 515, 685
PspPI GGNCC 2 cut(s) 302, 514
PsuI RGATCY 1 cut(s) 683
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
RseI CAYNNNNRTG 2 cut(s) 59, 366
SaqAI TTAA 2 cut(s) 492, 555
SatI GCNGC 4 cut(s) 35, 66, 88, 525
Sau3AI GATC 4 cut(s) 391, 683, 827, 886
Sau96I GGNCC 2 cut(s) 302, 514
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 49, 101
SfaNI GCATC 1 cut(s) 241
SfcI CTRYAG 1 cut(s) 801
SmiMI CAYNNNNRTG 2 cut(s) 59, 366
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 5 cut(s) 445, 625, 706, 759, 807
SsiI CCGC 5 cut(s) 37, 65, 87, 524, 942
SspMI CTAG 4 cut(s) 27, 132, 162, 306
StyD4I CCNGG 1 cut(s) 637
TaaI ACNGT 5 cut(s) 437, 802, 853, 875, 956
TaqI TCGA 2 cut(s) 271, 622
TasI AATT 5 cut(s) 445, 625, 706, 759, 807
TauI GCSGC 3 cut(s) 68, 90, 527
TfiI GAWTC 3 cut(s) 208, 440, 667
Tru1I TTAA 2 cut(s) 492, 555
Tru9I TTAA 2 cut(s) 492, 555
TseFI GTSAC 2 cut(s) 218, 847
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 2 cut(s) 218, 847
TspDTI ATGAA 2 cut(s) 546, 699
TspGWI ACGGA 1 cut(s) 416
Van91I CCANNNNNTGG 1 cut(s) 281
VneI GTGCAC 1 cut(s) 45
XapI RAATTY 3 cut(s) 445, 706, 807
XceI RCATGY 1 cut(s) 901
XspI CTAG 4 cut(s) 27, 132, 162, 306
Zsp2I ATGCAT 1 cut(s) 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.