Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Forward (+)

17858363 .. 17861017

Gene Structure 2655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23740.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGCTTGAAGACAGACCATCATTTTTCAAGGTCCTTGTTGGTGACTTCTCCCAGCAACTGTGTATACCGCGTGCGTTTGTGAAGAACTTCAATGGTCATGTACCACGATTTTGTGGCCTTAGAGGCCCTTGTGGGAACTTGTGGGCTGTAAATTTGAAGGTGATCAGGAATCGCTTGGTTTTTCATGATGGTTGGCAGAGTTTTGCAAAGCATCATTTTCTGGAAATTGGGGATTTCTTGACTTTCACTCTAGATGGTGAATCAATTTTTGATGTCATAATTTATGGTAAAAGCTACTGCGAGAAGAATATAGAAGCAGCCAAGAACATGATAGGAGATGTTGTGGACAGAACAATAAACACTGACATCATTTTAGGAAAGAGACTTGCACCTGATCTTGTGGAAGAAACTTCCATTGGACCCATCTCTTCCAATCCAGCAAATCTATTTTTCAAAACTACTTTTACAAGGTCTTTACGATATAACCTGAAAATTCCAGCCAGAGTAGTCAAAGCCGCAGGTCTTATGAGCAATAAAACTATAATGCTTCAAGATCCATCTGGGAAGCCATGGTCTATTAAACTCACTGAGACGACAAGGGGTCAATTGCGTATGAAAGATTGGTATAAATGTTGTGAAGAGAACCAAATTTCATATGGAGACACCCTGATAATTGAGGTAGTCAAGCATTCCGTATTTCAACTTCATGTTCATAAAGTAGGAGCGGCCCTGGATGTCGTGGAAGAAACATCTATGGTACCCTTCTCTATCAATCCGGCAAATCCTTTTTTCAAAACTATGTTTAAGAGGTCTATGCGATATGACCTGATAATTCCAAACAGAATTGTCAGAGCTGCAGGTCCTATAAGCAAAACCATAGTGCTTAAAGATCCAGCTGAGAGGCAGTGGTCTATTAAACTTCACGAAACTACAATGGGTCGATTGCGTATGGAGGGTTGGGGCAAATGCTGTGAAGAGAACCAAATTTCTACTGGAGACACCATTGTTATTGAGGTAGTCAAGCATTCTGTATTTCAACTTCATGTGTATAAAGCAGGAGCAACCCTGGATGTGAAAACTCAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

364

Amino Acids

41.19

Weight (kDa)

9.08

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	9 - 92	1.6e-13	B3 DNA binding domain
B3	PF02362	151 - 239	2e-10	B3 DNA binding domain
B3	PF02362	264 - 339	6.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	512, 851
Acc65I	GGTACC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	760
AccBSI	CCGCTC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	67
AccII	CGCG	1 cut(s)	73
AciI	CCGC	3 cut(s)	71, 519, 728
AclWI	GGATC	2 cut(s)	551, 887
AcsI	RAATTY	4 cut(s)	154, 495, 651, 987
AfaI	GTAC	2 cut(s)	105, 762
AgsI	TTSAA	9 cut(s)	11, 31, 94, 160, 457, 554, 704, 796, 1040
AhdI	GACNNNNNGTC	1 cut(s)	603
AjnI	CCWGG	2 cut(s)	732, 1068
AjuI	GAANNNNNNNTTGG	2 cut(s)	402, 434
AluBI	AGCT	5 cut(s)	7, 297, 857, 899, 1089
AluI	AGCT	5 cut(s)	7, 297, 857, 899, 1089
Alw26I	GTCTC	4 cut(s)	379, 587, 657, 993
AlwI	GGATC	2 cut(s)	551, 887
AlwNI	CAGNNNCTG	1 cut(s)	61
AoxI	GGCC	3 cut(s)	118, 127, 729
ApeKI	GCWGC	2 cut(s)	320, 857
ApoI	RAATTY	4 cut(s)	154, 495, 651, 987
Asp700I	GAANNNNTTC	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	760
AspS9I	GGNCC	5 cut(s)	34, 128, 422, 730, 863
AsuHPI	GGTGA	3 cut(s)	56, 175, 272
AvaII	GGWCC	3 cut(s)	34, 422, 863
BanI	GGYRCC	1 cut(s)	760
BarI	GAAGNNNNNNTAC	4 cut(s)	690, 722, 1026, 1058
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	332, 844
BccI	CCATC	5 cut(s)	28, 185, 251, 434, 568
BciT130I	CCWGG	2 cut(s)	734, 1070
BclI	TGATCA	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	379, 587, 657, 993
BfaI	CTAG	2 cut(s)	254, 1090
BfmI	CTRYAG	1 cut(s)	858
BfuAI	ACCTGC	2 cut(s)	512, 851
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	321, 519, 729, 858
BlsI	GCNGC	4 cut(s)	322, 520, 730, 859
Bme1390I	CCNGG	2 cut(s)	734, 1070
Bme18I	GGWCC	3 cut(s)	34, 422, 863
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmgT120I	GGNCC	5 cut(s)	34, 128, 422, 730, 863
BmiI	GGNNCC	2 cut(s)	424, 762
BmrFI	CCNGG	2 cut(s)	734, 1070
BmsI	GCATC	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	1017
BsaJI	CCNNGG	3 cut(s)	572, 732, 1068
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bse1I	ACTGG	1 cut(s)	1000
BseBI	CCWGG	2 cut(s)	734, 1070
BseDI	CCNNGG	3 cut(s)	572, 732, 1068
BseGI	GGATG	2 cut(s)	742, 1078
BseMII	CTCAG	2 cut(s)	582, 891
BseNI	ACTGG	1 cut(s)	1000
BseXI	GCAGC	2 cut(s)	332, 844
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	73
BshFI	GGCC	3 cut(s)	120, 129, 731
BshNI	GGYRCC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	779
BsmAI	GTCTC	4 cut(s)	379, 587, 657, 993
BsmBI	CGTCTC	1 cut(s)	587
BsmI	GAATGC	2 cut(s)	691, 1027
BsnI	GGCC	3 cut(s)	120, 129, 731
Bsp143I	GATC	4 cut(s)	165, 397, 556, 892
Bsp19I	CCATGG	1 cut(s)	572
BspACI	CCGC	3 cut(s)	71, 519, 728
BspANI	GGCC	3 cut(s)	120, 129, 731
BspCNI	CTCAG	2 cut(s)	583, 892
BspFNI	CGCG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	424, 762
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	2 cut(s)	512, 851
BspPI	GGATC	2 cut(s)	551, 887
BspT107I	GGYRCC	1 cut(s)	760
BsrBI	CCGCTC	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	1000
BssECI	CCNNGG	3 cut(s)	572, 732, 1068
BssMI	GATC	4 cut(s)	165, 397, 556, 892
BssNAI	GTATAC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	572
Bst1107I	GTATAC	1 cut(s)	68
Bst2UI	CCWGG	2 cut(s)	734, 1070
Bst4CI	ACNGT	1 cut(s)	63
Bst6I	CTCTTC	3 cut(s)	436, 636, 972
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	3 cut(s)	122, 591, 900
BstDSI	CCRYGG	1 cut(s)	572
BstF5I	GGATG	2 cut(s)	742, 1078
BstFNI	CGCG	1 cut(s)	73
BstKTI	GATC	4 cut(s)	168, 400, 559, 895
BstMAI	GTCTC	4 cut(s)	379, 587, 657, 993
BstMBI	GATC	4 cut(s)	165, 397, 556, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	2 cut(s)	734, 1070
BstSCI	CCNGG	2 cut(s)	732, 1068
BstSFI	CTRYAG	1 cut(s)	858
BstUI	CGCG	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	332, 844
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	556, 892
BstYI	RGATCY	2 cut(s)	556, 892
BstZ17I	GTATAC	1 cut(s)	68
BsuRI	GGCC	3 cut(s)	120, 129, 731
BtgI	CCRYGG	1 cut(s)	572
BtsCI	GGATG	2 cut(s)	742, 1078
BtsI	GCAGTG	1 cut(s)	914
BtsIMutI	CAGTG	3 cut(s)	363, 588, 914
BveI	ACCTGC	2 cut(s)	512, 851
Cac8I	GCNNGC	1 cut(s)	75
CaiI	CAGNNNCTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	5 cut(s)	34, 128, 422, 730, 863
Csp6I	GTAC	2 cut(s)	104, 761
CviAII	CATG	6 cut(s)	101, 188, 331, 573, 710, 1046
CviQI	GTAC	2 cut(s)	104, 761
DdeI	CTNAG	3 cut(s)	122, 591, 900
DpnI	GATC	4 cut(s)	167, 399, 558, 894
DpnII	GATC	4 cut(s)	165, 397, 556, 892
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	3 cut(s)	436, 636, 972
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	3 cut(s)	436, 636, 972
Eco130I	CCWWGG	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	34, 422, 863
EcoO109I	RGGNCCY	3 cut(s)	34, 128, 863
EcoRII	CCWGG	2 cut(s)	732, 1068
EcoT14I	CCWWGG	1 cut(s)	572
ErhI	CCWWGG	1 cut(s)	572
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	6 cut(s)	104, 191, 334, 576, 713, 1049
FatI	CATG	6 cut(s)	100, 187, 330, 572, 709, 1045
FauNDI	CATATG	1 cut(s)	658
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	4 cut(s)	321, 519, 729, 858
FokI	GGATG	2 cut(s)	749, 1085
Fsp4HI	GCNGC	4 cut(s)	321, 519, 729, 858
FspBI	CTAG	2 cut(s)	254, 1090
GluI	GCNGC	4 cut(s)	321, 519, 729, 858
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	1017
HaeIII	GGCC	3 cut(s)	120, 129, 731
HapII	CCGG	1 cut(s)	779
Hin1II	CATG	6 cut(s)	104, 191, 334, 576, 713, 1049
HinfI	GANTC	2 cut(s)	172, 263
HpaII	CCGG	1 cut(s)	779
HphI	GGTGA	3 cut(s)	56, 175, 272
Hpy166II	GTNNAC	2 cut(s)	68, 349
Hpy188I	TCNGA	1 cut(s)	854
Hpy188III	TCNNGA	7 cut(s)	169, 188, 224, 241, 254, 554, 926
Hpy8I	GTNNAC	2 cut(s)	68, 349
HpyAV	CCTTC	2 cut(s)	154, 775
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	209, 392, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	122, 591, 900
Hsp92II	CATG	6 cut(s)	104, 191, 334, 576, 713, 1049
KpnI	GGTACC	1 cut(s)	764
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	165, 397, 556, 892
LmnI	GCTCC	3 cut(s)	4, 725, 1061
Lsp1109I	GCAGC	2 cut(s)	332, 844
LweI	GCATC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	254, 1090
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	4 cut(s)	167, 399, 558, 894
MbiI	CCGCTC	1 cut(s)	728
MboI	GATC	4 cut(s)	165, 397, 556, 892
MboII	GAAGA	8 cut(s)	23, 97, 319, 419, 423, 653, 758, 989
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	2 cut(s)	556, 892
MnlI	CCTC	6 cut(s)	119, 673, 804, 897, 949, 1009
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	4 cut(s)	582, 807, 888, 918
MspA1I	CMGCKG	1 cut(s)	899
MspI	CCGG	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	734, 1070
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	2 cut(s)	691, 1027
MvaI	CCWGG	2 cut(s)	734, 1070
MvnI	CGCG	1 cut(s)	73
MwoI	GCNNNNNNNGC	1 cut(s)	126
NcoI	CCATGG	1 cut(s)	572
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	4 cut(s)	165, 397, 556, 892
NlaIII	CATG	6 cut(s)	104, 191, 334, 576, 713, 1049
NlaIV	GGNNCC	2 cut(s)	424, 762
NmuCI	GTSAC	1 cut(s)	44
PagI	TCATGA	1 cut(s)	187
PctI	GAATGC	2 cut(s)	691, 1027
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	172, 263
PkrI	GCNGC	4 cut(s)	322, 520, 730, 859
PpuMI	RGGWCCY	2 cut(s)	34, 863
Psp5II	RGGWCCY	2 cut(s)	34, 863
Psp6I	CCWGG	2 cut(s)	732, 1068
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	732, 1068
PspN4I	GGNNCC	2 cut(s)	424, 762
PspPI	GGNCC	5 cut(s)	34, 128, 422, 730, 863
PspPPI	RGGWCCY	2 cut(s)	34, 863
PstI	CTGCAG	1 cut(s)	862
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	556, 892
PvuII	CAGCTG	1 cut(s)	899
RsaI	GTAC	2 cut(s)	105, 762
RsaNI	GTAC	2 cut(s)	104, 761
SaqAI	TTAA	4 cut(s)	582, 807, 888, 918
SatI	GCNGC	4 cut(s)	321, 519, 729, 858
Sau3AI	GATC	4 cut(s)	165, 397, 556, 892
Sau96I	GGNCC	5 cut(s)	34, 128, 422, 730, 863
ScrFI	CCNGG	2 cut(s)	734, 1070
SfaNI	GCATC	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	858
SfiI	GGCCNNNNNGGCC	1 cut(s)	126
SinI	GGWCC	3 cut(s)	34, 422, 863
SsiI	CCGC	3 cut(s)	71, 519, 728
SspMI	CTAG	2 cut(s)	254, 1090
StyD4I	CCNGG	2 cut(s)	732, 1068
StyI	CCWWGG	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	943
TauI	GCSGC	2 cut(s)	521, 731
TfiI	GAWTC	2 cut(s)	172, 263
Tru1I	TTAA	4 cut(s)	582, 807, 888, 918
Tru9I	TTAA	4 cut(s)	582, 807, 888, 918
TscAI	CASTG	3 cut(s)	370, 595, 914
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	320, 857
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	6 cut(s)	176, 632, 645, 698, 704, 1034
TspGWI	ACGGA	1 cut(s)	685
TspRI	CASTG	3 cut(s)	370, 595, 914
VpaK11BI	GGWCC	3 cut(s)	34, 422, 863
XapI	RAATTY	4 cut(s)	154, 495, 651, 987
XbaI	TCTAGA	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	2 cut(s)	656, 992
XmiI	GTMKAC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	2 cut(s)	254, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.