Rroxscaffold_3G00234250

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000210
Physical Location & Seq
Reverse (-)
20573891 .. 20575982
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234250.1

Sequence Viewer

Length: 945 bp
ATGGCGAGGAAGCCAGTTAGCAAGTGTACGCCAAATAAACCGTCATTTTTCAAGGTGCTGTGTGGTGACTTCTCTAAGCGTCTGCTTATACCCCCAGAGCTTACCAAGAACTTCATTTGGAATGGGAGATCACCTCACGAATGTGCTCTTAGAGGTCCTAGTGGACTATGTTGGGCTGTGGAATTGGAAAGAACTGAAAATGGCTTGTTCTTCCAGAATGGATGGCAGTGTTTTGTGAAGGATCACCATTTAGAACTTGGGGATTTTTTGATCATCAGATATGATGGTGAATCAAAGTTTAATGTCATAATCTATGATAGAAGTGCCTGTGAGAAAGATGTAAAAGTAGCCAAGAGGAGAATGAACTGTTCTGTTTGTTTGAGGAGTAACGGAAATCAAGCTCGAGTAAAAGATGAAGTTCTTGACCTTGTAACTGAAAACAACAAGAATATAGACAGTAAAGGCGAAACAGTCGTTGCTGGTGAAAAAGGCAATGATGTCATGTCGGGAAAGAGACCTGCTAATGGTTACTTGGAAGAAACAACAGATGGATCTATCTTGTTCAAATCGGAGAATTCATGTTTTCAAAGAATTTTGACGAAGCATTCAAAATATCACATTGGGATTCCAAAAGAACTCGGTGTAGCTAAAGGTCTTATGAATGAGAAGACCATGAAGCTTGAAGATCCAACTGGGAGATCTTGGCCTGTTAATCTGCGTGCTTCTAAATTTTACAAAAAAGATGGCAGATTATATGACCGTTTAGACTTGACATCAGGTTGGTCACAAATTTGTGAAGCGAACAAGATTTCACTTGGGGATACCATTATTTTTGAGCTTGTCAAGCAAAGAGTGATGAAAATTTATATTATCAGAGTAGGGAGATTGAGAGGCAAAGGATGTGCTGTTAGACTAGTTGCTCCTAATGTCAAAAGTTCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

314

Amino Acids

35.53

Weight (kDa)

9.42

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 23 - 107 1.2e-13 B3 DNA binding domain
B3 PF02362 203 - 291 1.3e-12 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 526
AclWI GGATC 3 cut(s) 249, 559, 680
AcsI RAATTY 5 cut(s) 574, 591, 728, 789, 861
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 6 cut(s) 52, 565, 587, 609, 683, 939
AhlI ACTAGT 1 cut(s) 913
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 5 cut(s) 100, 401, 647, 679, 838
AluI AGCT 5 cut(s) 100, 401, 647, 679, 838
Alw21I GWGCWC 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 508
AlwI GGATC 3 cut(s) 249, 559, 680
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 1 cut(s) 704
ApoI RAATTY 5 cut(s) 574, 591, 728, 789, 861
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 5 cut(s) 77, 123, 236, 299, 494
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 148
BccI CCATC 4 cut(s) 216, 278, 542, 737
BciVI GTATCC 1 cut(s) 814
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 508
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 3 cut(s) 159, 914, 943
BfuAI ACCTGC 1 cut(s) 526
BfuI GTATCC 1 cut(s) 814
BglII AGATCT 1 cut(s) 698
Bme18I GGWCC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 702
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 674
BplI GAGNNNNNCTC 2 cut(s) 118, 150
BsaI GGTCTC 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse1I ACTGG 2 cut(s) 14, 697
Bse3DI GCAATG 1 cut(s) 499
BseGI GGATG 2 cut(s) 227, 905
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMI GCAATG 1 cut(s) 499
BseNI ACTGG 2 cut(s) 14, 697
BseRI GAGGAG 2 cut(s) 370, 397
BshFI GGCC 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 148
BsiHKCI CYCGRG 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 1 cut(s) 508
BsmI GAATGC 1 cut(s) 604
BsnI GGCC 1 cut(s) 706
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 6 cut(s) 128, 241, 270, 551, 685, 698
BspANI GGCC 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 3 cut(s) 249, 559, 680
BspTNI GGTCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 499
BsrI ACTGG 2 cut(s) 14, 697
BssMI GATC 6 cut(s) 128, 241, 270, 551, 685, 698
Bst4CI ACNGT 5 cut(s) 42, 368, 458, 472, 761
BstC8I GCNNGC 1 cut(s) 720
BstDEI CTNAG 2 cut(s) 75, 149
BstF5I GGATG 2 cut(s) 227, 905
BstKTI GATC 6 cut(s) 131, 244, 273, 554, 688, 701
BstMAI GTCTC 1 cut(s) 508
BstMBI GATC 6 cut(s) 128, 241, 270, 551, 685, 698
BstMWI GCNNNNNNNGC 1 cut(s) 844
BstV2I GAAGAC 1 cut(s) 674
BstX2I RGATCY 3 cut(s) 551, 685, 698
BstYI RGATCY 3 cut(s) 551, 685, 698
BsuI GTATCC 1 cut(s) 814
BsuRI GGCC 1 cut(s) 706
BtsCI GGATG 2 cut(s) 227, 905
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 1 cut(s) 233
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 720
Cfr13I GGNCC 1 cut(s) 155
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 27
CviAII CATG 3 cut(s) 502, 579, 673
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 2 cut(s) 75, 149
DpnI GATC 6 cut(s) 130, 243, 272, 553, 687, 700
DpnII GATC 6 cut(s) 128, 241, 270, 551, 685, 698
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 574
FaeI CATG 3 cut(s) 505, 582, 676
FatI CATG 3 cut(s) 501, 578, 672
FbaI TGATCA 1 cut(s) 270
FokI GGATG 2 cut(s) 234, 912
FspBI CTAG 3 cut(s) 159, 914, 943
HaeIII GGCC 1 cut(s) 706
HgaI GACGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 505, 582, 676
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 2 cut(s) 290, 625
HphI GGTGA 5 cut(s) 77, 123, 236, 299, 494
Hpy166II GTNNAC 2 cut(s) 27, 164
Hpy188I TCNGA 3 cut(s) 278, 571, 875
Hpy188III TCNNGA 4 cut(s) 137, 214, 422, 507
Hpy8I GTNNAC 2 cut(s) 27, 164
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 5 cut(s) 42, 368, 458, 472, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 844
HpyF3I CTNAG 2 cut(s) 75, 149
Hsp92II CATG 3 cut(s) 505, 582, 676
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 6 cut(s) 128, 241, 270, 551, 685, 698
LmnI GCTCC 1 cut(s) 925
LpnPI CCDG 9 cut(s) 27, 108, 227, 340, 465, 531, 678, 720, 762
MaeI CTAG 3 cut(s) 159, 914, 943
MaeIII GTNAC 5 cut(s) 65, 386, 430, 527, 783
MalI GATC 6 cut(s) 130, 243, 272, 553, 687, 700
MboI GATC 6 cut(s) 128, 241, 270, 551, 685, 698
MboII GAAGA 4 cut(s) 202, 548, 679, 695
MflI RGATCY 3 cut(s) 551, 685, 698
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 6 cut(s) 182, 574, 591, 728, 789, 861
MmeI TCCRAC 1 cut(s) 713
MnlI CCTC 5 cut(s) 144, 146, 348, 375, 884
MseI TTAA 2 cut(s) 300, 711
MslI CAYNNNNRTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 604
MwoI GCNNNNNNNGC 1 cut(s) 844
NdeII GATC 6 cut(s) 128, 241, 270, 551, 685, 698
NlaIII CATG 3 cut(s) 505, 582, 676
NmuCI GTSAC 2 cut(s) 65, 783
OliI CACNNNNGTG 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 402
PctI GAATGC 1 cut(s) 604
PfeI GAWTC 2 cut(s) 290, 625
PpuMI RGGWCCY 1 cut(s) 155
Psp5II RGGWCCY 1 cut(s) 155
PspPI GGNCC 1 cut(s) 155
PspPPI RGGWCCY 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 402
PsuI RGATCY 3 cut(s) 551, 685, 698
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 300, 711
Sau3AI GATC 6 cut(s) 128, 241, 270, 551, 685, 698
Sau96I GGNCC 1 cut(s) 155
SduI GDGCHC 1 cut(s) 148
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 155
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 6 cut(s) 182, 574, 591, 728, 789, 861
SspMI CTAG 3 cut(s) 159, 914, 943
TaaI ACNGT 5 cut(s) 42, 368, 458, 472, 761
TaqI TCGA 1 cut(s) 403
TasI AATT 6 cut(s) 182, 574, 591, 728, 789, 861
TfiI GAWTC 2 cut(s) 290, 625
Tru1I TTAA 2 cut(s) 300, 711
Tru9I TTAA 2 cut(s) 300, 711
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 2 cut(s) 65, 783
Tsp45I GTSAC 2 cut(s) 65, 783
TspDTI ATGAA 7 cut(s) 103, 377, 429, 567, 674, 689, 872
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 155
XapI RAATTY 5 cut(s) 574, 591, 728, 789, 861
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 402
XspI CTAG 3 cut(s) 159, 914, 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.