Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000210

Physical Location & Seq

Genomic Coordinates Reverse (-)

66359691 .. 66360461

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCTGGAAAGCCGCCGAGAGTTGAGGATGGTAAAGAAACATCAACTGGATCCATCATCTTCAAATCGGAGTATTCATGTTTTAAAGCAACTTTGAAGACAAGGTGTTCAAGATATAGGATGGCGATTCCAAAGGATCTAGCCGTGACCAAAGGTCTTATGAGTAAGAAGACTATAGAAATTGAAGACTCAACTGGGAGATTGTGGCCTGCTAAACTTGTGAGTCTCACGTCTAAAGAGAACAATAAGACTTGCAGCTTGGCCATGTCAACAGGTTGGGGAGAATGTTCTAAAGCCAACAAGATTGCAGTTGGGGACACCGTTGTTTTTGAGTTTGTTAAACAAAGTGTAATTCGACTTCATATTTTTAGAAAAGGTCTAGGAACAAGAGGAGGCAATAATAGGCCTAACCCTGTGGTACTTGATGCCCCCAACATCAAGAACTACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

150

Amino Acids

16.52

Weight (kDa)

9.86

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	29 - 125	5.6e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66980
fragaria_vesca	FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica	MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica	Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis	pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis	RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata	RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora	Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii	Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa	Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha	Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana	Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	3 cut(s)	45, 58, 144
AcoI	YGGCCR	1 cut(s)	261
AfaI	GTAC	1 cut(s)	420
AgsI	TTSAA	4 cut(s)	64, 97, 111, 185
AhdI	GACNNNNNGTC	1 cut(s)	153
AjiI	CACGTC	1 cut(s)	231
AluBI	AGCT	2 cut(s)	258, 450
AluI	AGCT	2 cut(s)	258, 450
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	45, 58, 144
AoxI	GGCC	3 cut(s)	206, 261, 404
ApeKI	GCWGC	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	263
BamHI	GGATCC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BbsI	GAAGAC	3 cut(s)	104, 176, 192
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	3 cut(s)	23, 62, 115
BceAI	ACGGC	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	3 cut(s)	140, 380, 451
BfmI	CTRYAG	2 cut(s)	174, 445
BisI	GCNGC	2 cut(s)	14, 256
BlsI	GCNGC	2 cut(s)	15, 257
BmeRI	GACNNNNNGTC	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	3 cut(s)	104, 176, 192
Bse1I	ACTGG	2 cut(s)	52, 199
BseGI	GGATG	2 cut(s)	34, 126
BseNI	ACTGG	2 cut(s)	52, 199
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	3 cut(s)	208, 263, 406
BslFI	GGGAC	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	3 cut(s)	208, 263, 406
Bsp143I	GATC	2 cut(s)	50, 136
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	208, 263, 406
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	3 cut(s)	45, 58, 144
BsrI	ACTGG	2 cut(s)	52, 199
BssMI	GATC	2 cut(s)	50, 136
Bst4CI	ACNGT	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	210
BstF5I	GGATG	2 cut(s)	34, 126
BstKTI	GATC	2 cut(s)	53, 139
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	50, 136
BstSFI	CTRYAG	2 cut(s)	174, 445
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	3 cut(s)	104, 176, 192
BstX2I	RGATCY	2 cut(s)	50, 136
BstYI	RGATCY	2 cut(s)	50, 136
BsuRI	GGCC	3 cut(s)	208, 263, 406
BtrI	CACGTC	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	34, 126
Cac8I	GCNNGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	2 cut(s)	78, 265
CviJI	RGCY	8 cut(s)	13, 143, 208, 258, 263, 296, 406, 450
CviKI_1	RGCY	8 cut(s)	13, 143, 208, 258, 263, 296, 406, 450
CviQI	GTAC	1 cut(s)	419
DpnI	GATC	2 cut(s)	52, 138
DpnII	GATC	2 cut(s)	50, 136
DraI	TTTAAA	1 cut(s)	85
DriI	GACNNNNNGTC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	406
FaeI	CATG	2 cut(s)	81, 268
FaiI	YATR	6 cut(s)	79, 117, 161, 176, 266, 363
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	2 cut(s)	77, 264
Fnu4HI	GCNGC	2 cut(s)	14, 256
FokI	GGATG	2 cut(s)	41, 133
Fsp4HI	GCNGC	2 cut(s)	14, 256
FspBI	CTAG	3 cut(s)	140, 380, 451
GluI	GCNGC	2 cut(s)	14, 256
HaeIII	GGCC	3 cut(s)	208, 263, 406
Hin1II	CATG	2 cut(s)	81, 268
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	127, 188, 223
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	6, 111, 439
Hpy8I	GTNNAC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	255, 308
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	81, 268
Kzo9I	GATC	2 cut(s)	50, 136
LpnPI	CCDG	5 cut(s)	33, 180, 222, 258, 426
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	3 cut(s)	140, 380, 451
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	2 cut(s)	52, 138
MboI	GATC	2 cut(s)	50, 136
MboII	GAAGA	4 cut(s)	52, 109, 181, 197
MflI	RGATCY	2 cut(s)	50, 136
MlsI	TGGCCA	1 cut(s)	263
MluCI	AATT	2 cut(s)	180, 351
MluNI	TGGCCA	1 cut(s)	263
MlyI	GAGTC	2 cut(s)	182, 232
MnlI	CCTC	3 cut(s)	19, 383, 386
Mox20I	TGGCCA	1 cut(s)	263
MscI	TGGCCA	1 cut(s)	263
MseI	TTAA	2 cut(s)	84, 339
Msp20I	TGGCCA	1 cut(s)	263
NdeII	GATC	2 cut(s)	50, 136
NlaIII	CATG	2 cut(s)	81, 268
NlaIV	GGNNCC	1 cut(s)	52
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	15, 257
PleI	GAGTC	2 cut(s)	182, 231
PpsI	GAGTC	2 cut(s)	182, 231
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	2 cut(s)	50, 136
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	84, 339
SatI	GCNGC	2 cut(s)	14, 256
Sau3AI	GATC	2 cut(s)	50, 136
SchI	GAGTC	2 cut(s)	182, 232
SetI	ASST	7 cut(s)	107, 157, 233, 260, 277, 379, 452
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	2 cut(s)	174, 445
Sse9I	AATT	2 cut(s)	180, 351
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	3 cut(s)	140, 380, 451
StuI	AGGCCT	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	180, 351
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	84, 339
Tru9I	TTAA	2 cut(s)	84, 339
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	66, 350
XspI	CTAG	3 cut(s)	140, 380, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.