Rroxscaffold_6G00399560

B3 domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
21516453 .. 21518587
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399560.1

Sequence Viewer

Length: 954 bp
ATGAGAGGAAAAAGGTGGCAAGGTGCCATAACTCCATTGGAGTTGGGAAAAGTCACATCACATCACTGTAATGTGGAAAAGCTTGCAGACCCAAAGCGTGGCCTGGGGTGCAGGACCAAACTCGACCTTCAAGATAATGCTCATAAATTAAAGCTCTTGATATCGAGTCAGACAAGGCCAGCATTTAGAGAGAGAGAAGAAACCAGAGGGGTTAGTTGTGGAGGTGCTGAGAAGAACCCAGCTGGGAAGAAGACAGAGAGCCGTATACCACGTGCGTTTGTGAAGAACTTCAATGGTCGTGTACCACGAATGTGTGGCCTTAGAGGCCCTTGTGGAAACTTGTGGGCTGTGAATTTAAAAGAGATCGAGGATCGTGTGGTTTTCCATAATGGATGGCAGAGTTTTGCAAAGCATCATTTTCTGGAAGTTGGGGATTTCTTGACTTTCACTAAAGATGATGGATCAATTTTTGATGTCATAATTTATGATAAAAGCTACCGTGAGAAGAATGTTGAAGTAGCCAAGAGCAGGATTGGCAATGTTGTGGACAGAGCAATTAACAACCACGTCATTTTAGGAAAGAGACCTGCACTTGATCTTGTGGAAGAAACATCTATTGGATCCATCTCTTTCAATCCGGAGAATCCATTTTTTACTACTATTTTTACGAGGTATACTCGATATGACCTGAGAATTCCAAGCAAAGTAATCATAGCTGCAGGTCTTATGAACAATAAAACTATAATGCTTCAAGATCCAACTGGGAGGCCATGGTCTATTAAACTCAACGAAACAACAAGGGGTCAAATGCGTATGGAAGGCTGGTGTAATGTTTGTAAAGAGAACGAAATTTCATTTGGAGACACCCTTGTTATTGAGGTAGTCAAGCATTCTGTACTTCAACTCCATGTTTATAAAGTAGGAGCAGCCCTGGATGTCGAAACTCAAAGCTAG

Protein Analysis

317

Amino Acids

35.82

Weight (kDa)

9.41

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 83 - 157 7.4e-12 B3 DNA binding domain
B3 PF02362 225 - 304 4.2e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
Acc36I ACCTGC 2 cut(s) 595, 710
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 98
AccI GTMKAC 2 cut(s) 265, 674
AccIII TCCGGA 1 cut(s) 637
AclWI GGATC 5 cut(s) 378, 469, 615, 628, 749
AcsI RAATTY 3 cut(s) 352, 693, 849
AcvI CACGTG 1 cut(s) 272
AfaI GTAC 2 cut(s) 303, 897
AfiI CCNNNNNNNGG 2 cut(s) 98, 528
AgsI TTSAA 6 cut(s) 131, 292, 515, 634, 752, 902
AjiI CACGTC 1 cut(s) 568
AjnI CCWGG 2 cut(s) 102, 930
AjuI GAANNNNNNNTTGG 4 cut(s) 600, 632, 840, 872
AleI CACNNNNGTG 1 cut(s) 310
AluBI AGCT 6 cut(s) 82, 154, 242, 495, 716, 951
AluI AGCT 6 cut(s) 82, 154, 242, 495, 716, 951
Alw26I GTCTC 2 cut(s) 577, 855
AlwI GGATC 5 cut(s) 378, 469, 615, 628, 749
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 5 cut(s) 100, 176, 316, 325, 767
ApeKI GCWGC 2 cut(s) 716, 926
ApoI RAATTY 3 cut(s) 352, 693, 849
Asp700I GAANNNNTTC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 114, 326
AvaII GGWCC 1 cut(s) 114
BamHI GGATCC 1 cut(s) 620
BanI GGYRCC 1 cut(s) 23
BbrPI CACGTG 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 703, 938
BccI CCATC 3 cut(s) 387, 452, 632
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 2 cut(s) 104, 932
BcoDI GTCTC 2 cut(s) 577, 855
BfaI CTAG 1 cut(s) 952
BfmI CTRYAG 1 cut(s) 717
BfuAI ACCTGC 2 cut(s) 595, 710
BglI GCCNNNNNGGC 1 cut(s) 324
BisI GCNGC 2 cut(s) 717, 927
BlsI GCNGC 2 cut(s) 718, 928
Bme1390I CCNGG 2 cut(s) 104, 932
Bme18I GGWCC 1 cut(s) 114
BmgBI CACGTC 1 cut(s) 568
BmgT120I GGNCC 2 cut(s) 114, 326
BmiI GGNNCC 2 cut(s) 25, 622
BmrFI CCNGG 2 cut(s) 104, 932
BmrI ACTGGG 1 cut(s) 771
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 771
BpiI GAAGAC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 661, 693
BsaAI YACGTR 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 3 cut(s) 103, 770, 930
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 528
Bse1I ACTGG 1 cut(s) 766
Bse3DI GCAATG 1 cut(s) 544
BseAI TCCGGA 1 cut(s) 637
BseBI CCWGG 2 cut(s) 104, 932
BseDI CCNNGG 3 cut(s) 103, 770, 930
BseGI GGATG 2 cut(s) 398, 940
BseLI CCNNNNNNNGG 2 cut(s) 98, 528
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 2 cut(s) 219, 680
BseNI ACTGG 1 cut(s) 766
BseXI GCAGC 2 cut(s) 703, 938
BseYI CCCAGC 2 cut(s) 238, 242
BsgI GTGCAG 2 cut(s) 130, 573
BshFI GGCC 5 cut(s) 102, 178, 318, 327, 769
BshNI GGYRCC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 638
BslI CCNNNNNNNGG 2 cut(s) 98, 528
BsmAI GTCTC 2 cut(s) 577, 855
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 5 cut(s) 102, 178, 318, 327, 769
Bso31I GGTCTC 1 cut(s) 577
Bsp13I TCCGGA 1 cut(s) 637
Bsp143I GATC 6 cut(s) 363, 370, 461, 595, 620, 754
Bsp19I CCATGG 1 cut(s) 770
BspANI GGCC 5 cut(s) 102, 178, 318, 327, 769
BspCNI CTCAG 2 cut(s) 220, 681
BspEI TCCGGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 25, 622
BspMAI CTGCAG 1 cut(s) 721
BspMI ACCTGC 2 cut(s) 595, 710
BspPI GGATC 5 cut(s) 378, 469, 615, 628, 749
BspT107I GGYRCC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 766
BssECI CCNNGG 3 cut(s) 103, 770, 930
BssMI GATC 6 cut(s) 363, 370, 461, 595, 620, 754
BssNAI GTATAC 2 cut(s) 266, 675
BssT1I CCWWGG 1 cut(s) 770
Bst1107I GTATAC 2 cut(s) 266, 675
Bst2UI CCWGG 2 cut(s) 104, 932
Bst4CI ACNGT 2 cut(s) 68, 500
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 84, 180
BstDEI CTNAG 3 cut(s) 228, 320, 689
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 2 cut(s) 398, 940
BstKTI GATC 6 cut(s) 366, 373, 464, 598, 623, 757
BstMAI GTCTC 2 cut(s) 577, 855
BstMBI GATC 6 cut(s) 363, 370, 461, 595, 620, 754
BstMWI GCNNNNNNNGC 3 cut(s) 108, 324, 534
BstNI CCWGG 2 cut(s) 104, 932
BstSCI CCNGG 2 cut(s) 102, 930
BstSFI CTRYAG 1 cut(s) 717
BstV1I GCAGC 2 cut(s) 703, 938
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 620, 754
BstYI RGATCY 2 cut(s) 620, 754
BstZ17I GTATAC 2 cut(s) 266, 675
BsuRI GGCC 5 cut(s) 102, 178, 318, 327, 769
BtgI CCRYGG 1 cut(s) 770
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 398, 940
BtsIMutI CAGTG 1 cut(s) 64
BveI ACCTGC 2 cut(s) 595, 710
Cac8I GCNNGC 2 cut(s) 84, 180
Cfr13I GGNCC 2 cut(s) 114, 326
Csp6I GTAC 2 cut(s) 302, 896
CviAII CATG 2 cut(s) 771, 908
CviQI GTAC 2 cut(s) 302, 896
DdeI CTNAG 3 cut(s) 228, 320, 689
DpnI GATC 6 cut(s) 365, 372, 463, 597, 622, 756
DpnII GATC 6 cut(s) 363, 370, 461, 595, 620, 754
DraI TTTAAA 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 770
Eco31I GGTCTC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 114
Eco72I CACGTG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 102, 930
EcoRV GATATC 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 770
ErhI CCWWGG 1 cut(s) 770
FaeI CATG 2 cut(s) 774, 911
FatI CATG 2 cut(s) 770, 907
FblI GTMKAC 2 cut(s) 265, 674
Fnu4HI GCNGC 2 cut(s) 717, 927
FokI GGATG 2 cut(s) 405, 947
Fsp4HI GCNGC 2 cut(s) 717, 927
FspBI CTAG 1 cut(s) 952
GluI GCNGC 2 cut(s) 717, 927
GsaI CCCAGC 2 cut(s) 242, 246
HaeIII GGCC 5 cut(s) 102, 178, 318, 327, 769
HapII CCGG 1 cut(s) 638
Hin1II CATG 2 cut(s) 774, 911
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 166, 643
HpaII CCGG 1 cut(s) 638
Hpy166II GTNNAC 4 cut(s) 266, 302, 547, 675
Hpy188I TCNGA 1 cut(s) 171
Hpy188III TCNNGA 6 cut(s) 131, 157, 422, 439, 638, 752
Hpy8I GTNNAC 4 cut(s) 266, 302, 547, 675
HpyAV CCTTC 2 cut(s) 137, 812
HpyCH4III ACNGT 2 cut(s) 68, 500
HpyCH4IV ACGT 2 cut(s) 271, 567
HpyCH4V TGCA 5 cut(s) 86, 111, 407, 590, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 324, 534
HpyF3I CTNAG 3 cut(s) 228, 320, 689
HpySE526I ACGT 2 cut(s) 271, 567
Hsp92II CATG 2 cut(s) 774, 911
Kpn2I TCCGGA 1 cut(s) 637
Kzo9I GATC 6 cut(s) 363, 370, 461, 595, 620, 754
LmnI GCTCC 1 cut(s) 923
Lsp1109I GCAGC 2 cut(s) 703, 938
LweI GCATC 1 cut(s) 421
MaeI CTAG 1 cut(s) 952
MaeII ACGT 2 cut(s) 271, 567
MaeIII GTNAC 1 cut(s) 52
MalI GATC 6 cut(s) 365, 372, 463, 597, 622, 756
MboI GATC 6 cut(s) 363, 370, 461, 595, 620, 754
MboII GAAGA 7 cut(s) 209, 244, 259, 262, 295, 517, 617
MflI RGATCY 2 cut(s) 620, 754
MluCI AATT 7 cut(s) 146, 352, 465, 480, 555, 693, 849
MlyI GAGTC 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 782
MnlI CCTC 7 cut(s) 200, 215, 317, 361, 663, 759, 871
MroI TCCGGA 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 4 cut(s) 149, 356, 558, 780
MslI CAYNNNNRTG 2 cut(s) 69, 310
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 2 cut(s) 104, 932
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 2 cut(s) 104, 932
MwoI GCNNNNNNNGC 3 cut(s) 108, 324, 534
NcoI CCATGG 1 cut(s) 770
NdeII GATC 6 cut(s) 363, 370, 461, 595, 620, 754
NlaIII CATG 2 cut(s) 774, 911
NlaIV GGNNCC 2 cut(s) 25, 622
NmuCI GTSAC 1 cut(s) 52
OliI CACNNNNGTG 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 643
PflMI CCANNNNNTGG 1 cut(s) 98
PkrI GCNGC 2 cut(s) 718, 928
PleI GAGTC 1 cut(s) 174
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
PpsI GAGTC 1 cut(s) 174
Ppu21I YACGTR 1 cut(s) 272
PsiI TTATAA 1 cut(s) 915
Psp6I CCWGG 2 cut(s) 102, 930
PspCI CACGTG 1 cut(s) 272
PspFI CCCAGC 2 cut(s) 238, 242
PspGI CCWGG 2 cut(s) 102, 930
PspN4I GGNNCC 2 cut(s) 25, 622
PspPI GGNCC 2 cut(s) 114, 326
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 2 cut(s) 620, 754
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 2 cut(s) 303, 897
RsaNI GTAC 2 cut(s) 302, 896
RseI CAYNNNNRTG 2 cut(s) 69, 310
SaqAI TTAA 4 cut(s) 149, 356, 558, 780
SatI GCNGC 2 cut(s) 717, 927
Sau3AI GATC 6 cut(s) 363, 370, 461, 595, 620, 754
Sau96I GGNCC 2 cut(s) 114, 326
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 2 cut(s) 104, 932
SfaNI GCATC 1 cut(s) 421
SfcI CTRYAG 1 cut(s) 717
SfiI GGCCNNNNNGGCC 1 cut(s) 324
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 2 cut(s) 69, 310
Sse9I AATT 7 cut(s) 146, 352, 465, 480, 555, 693, 849
SspMI CTAG 1 cut(s) 952
StyD4I CCNGG 2 cut(s) 102, 930
StyI CCWWGG 1 cut(s) 770
TaaI ACNGT 2 cut(s) 68, 500
TaiI ACGT 2 cut(s) 274, 570
TaqI TCGA 5 cut(s) 123, 164, 366, 679, 939
TasI AATT 7 cut(s) 146, 352, 465, 480, 555, 693, 849
TatI WGTACW 1 cut(s) 895
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 4 cut(s) 149, 356, 558, 780
Tru9I TTAA 4 cut(s) 149, 356, 558, 780
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 2 cut(s) 716, 926
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 743, 843
TspRI CASTG 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 3 cut(s) 352, 693, 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XmiI GTMKAC 2 cut(s) 265, 674
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.