Rw1G002780

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000210
Physical Location & Seq
Forward (+)
5029986 .. 5031837
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002780.1

Sequence Viewer

Length: 741 bp
ATGGCTCATTCAGTACCAGTGCCTGCCTTCTTCCAGGTCCTTGTTGGTGATTTCTCTGAGAAACTGAAAATGCCAACAGCTTTTGTCAACCACTTCAATGGATCAGCACTTTGCAAACTTCGAGGCCCTAGTGGAAAGTGCTGGGATGTAATATTGGAAGAGGAAAATAATGATATTTTCTTCCATAAAGGCTGGAATAAATTTGTGAAGGATAATTTTTTGGAGGAAGGACACATTTTGGTTTTCAATTATGATGGCAATTCTTGGTTCAATGCGACAATCTATGATAAAAGTGCATGTGAATTGGACATGGAAGCAGCCAAGACAAAGAGAAGTACTGGCGGTCTTGATGGTCAAAGGAGGGATTATGTCATGCCTGGGGAGACAAGAATCAGAATCATTGAGTTCAAATCAGAGCATCTTTGCTTTAAGAGAACTATGGAGAAGCACAGACTGTATCAGCTGAGCATTCCAATAATAATAGCCAGGGCTAAGGGTCTCATAATCAAGCGGACTATAGAGCTTCGGGATCCAAGTAACAGATCATGGCTTATTAAAGTGACTCGCATGGGAGATGGTCGTTTACTTATGAACAAAGGCTGGCGTGCTTGTAGCAAGCGGAACCAGATTAAGAAAGGGCACACCATTGTTTTTGAGTTTGTGAAGGGACATGTGAAGCTTCACATCGTTAGAGCTGAGGGGTGTGGTGTGATACTCACAGGTCCTAATGTCATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

246

Amino Acids

28.2

Weight (kDa)

9.51

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 94 6.6e-14 B3 DNA binding domain
B3 PF02362 149 - 230 2.9e-11 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 342, 511, 619
AclWI GGATC 3 cut(s) 109, 524, 537
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 2 cut(s) 15, 337
AflIII ACRYGT 1 cut(s) 670
AgsI TTSAA 4 cut(s) 97, 247, 271, 409
AjnI CCWGG 3 cut(s) 33, 376, 485
AluBI AGCT 5 cut(s) 80, 463, 523, 679, 695
AluI AGCT 5 cut(s) 80, 463, 523, 679, 695
Alw26I GTCTC 2 cut(s) 377, 503
AlwI GGATC 3 cut(s) 109, 524, 537
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 200
AspS9I GGNCC 3 cut(s) 37, 125, 722
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 2 cut(s) 37, 722
BaeGI GKGCMC 1 cut(s) 642
BamHI GGATCC 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 329
BccI CCATC 3 cut(s) 248, 344, 569
BciT130I CCWGG 3 cut(s) 35, 378, 487
BcoDI GTCTC 2 cut(s) 377, 503
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 516
BisI GCNGC 1 cut(s) 318
BlpI GCTNAGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 337
Bme1390I CCNGG 3 cut(s) 35, 378, 487
Bme18I GGWCC 2 cut(s) 37, 722
BmgT120I GGNCC 3 cut(s) 37, 125, 722
BmiI GGNNCC 2 cut(s) 531, 623
BmrFI CCNGG 3 cut(s) 35, 378, 487
BmsI GCATC 1 cut(s) 427
Bpu10I CCTNAGC 2 cut(s) 492, 696
Bpu1102I GCTNAGC 1 cut(s) 464
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 377, 486
Bse1I ACTGG 2 cut(s) 17, 343
BseBI CCWGG 3 cut(s) 35, 378, 487
BseDI CCNNGG 2 cut(s) 377, 486
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 48, 455, 687
BseNI ACTGG 2 cut(s) 17, 343
BseSI GKGCMC 1 cut(s) 642
BseXI GCAGC 1 cut(s) 329
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 1 cut(s) 126
BslFI GGGAC 1 cut(s) 681
BsmAI GTCTC 2 cut(s) 377, 503
BsmFI GGGAC 1 cut(s) 681
BsmI GAATGC 1 cut(s) 468
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 642
Bsp143I GATC 3 cut(s) 101, 529, 542
Bsp1720I GCTNAGC 1 cut(s) 464
BspACI CCGC 3 cut(s) 342, 511, 619
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 3 cut(s) 49, 456, 688
BspLI GGNNCC 2 cut(s) 531, 623
BspPI GGATC 3 cut(s) 109, 524, 537
BspTNI GGTCTC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 17, 343
BssECI CCNNGG 2 cut(s) 377, 486
BssMI GATC 3 cut(s) 101, 529, 542
Bst2UI CCWGG 3 cut(s) 35, 378, 487
Bst4CI ACNGT 1 cut(s) 456
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 24, 602, 606, 617
BstDEI CTNAG 4 cut(s) 57, 464, 492, 696
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 3 cut(s) 104, 532, 545
BstMAI GTCTC 2 cut(s) 377, 503
BstMBI GATC 3 cut(s) 101, 529, 542
BstNI CCWGG 3 cut(s) 35, 378, 487
BstNSI RCATGY 2 cut(s) 300, 674
BstSCI CCNGG 3 cut(s) 33, 376, 485
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 4 cut(s) 24, 602, 606, 617
CaiI CAGNNNCTG 1 cut(s) 23
Cfr13I GGNCC 3 cut(s) 37, 125, 722
Csp6I GTAC 2 cut(s) 14, 336
CviAII CATG 6 cut(s) 297, 310, 373, 546, 568, 671
CviQI GTAC 2 cut(s) 14, 336
DdeI CTNAG 4 cut(s) 57, 464, 492, 696
DpnI GATC 3 cut(s) 103, 531, 544
DpnII GATC 3 cut(s) 101, 529, 542
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 37, 722
EcoO109I RGGNCCY 3 cut(s) 37, 125, 722
EcoRII CCWGG 3 cut(s) 33, 376, 485
FaeI CATG 6 cut(s) 300, 313, 376, 549, 571, 674
FaqI GGGAC 1 cut(s) 681
FatI CATG 6 cut(s) 296, 309, 372, 545, 567, 670
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 129
GluI GCNGC 1 cut(s) 318
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 1 cut(s) 126
Hin1II CATG 6 cut(s) 300, 313, 376, 549, 571, 674
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 3 cut(s) 390, 396, 562
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 88, 584
Hpy188I TCNGA 3 cut(s) 58, 395, 415
Hpy188III TCNNGA 2 cut(s) 347, 527
Hpy8I GTNNAC 2 cut(s) 88, 584
HpyAV CCTTC 4 cut(s) 37, 202, 221, 658
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4V TGCA 2 cut(s) 114, 296
HpyF3I CTNAG 4 cut(s) 57, 464, 492, 696
Hsp92II CATG 6 cut(s) 300, 313, 376, 549, 571, 674
Kzo9I GATC 3 cut(s) 101, 529, 542
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 536, 559
MalI GATC 3 cut(s) 103, 531, 544
MboI GATC 3 cut(s) 101, 529, 542
MboII GAAGA 3 cut(s) 22, 170, 172
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 642
MluCI AATT 5 cut(s) 200, 214, 247, 259, 302
MlyI GAGTC 1 cut(s) 556
MnlI CCTC 5 cut(s) 116, 154, 217, 354, 691
MseI TTAA 3 cut(s) 429, 555, 630
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 463
MspR9I CCNGG 3 cut(s) 35, 378, 487
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 3 cut(s) 35, 378, 487
NdeII GATC 3 cut(s) 101, 529, 542
NlaIII CATG 6 cut(s) 300, 313, 376, 549, 571, 674
NlaIV GGNNCC 2 cut(s) 531, 623
NmuCI GTSAC 1 cut(s) 559
NspI RCATGY 2 cut(s) 300, 674
PciI ACATGT 1 cut(s) 670
PctI GAATGC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 390, 396
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 556
PpsI GAGTC 1 cut(s) 556
PpuMI RGGWCCY 2 cut(s) 37, 722
PscI ACATGT 1 cut(s) 670
Psp5II RGGWCCY 2 cut(s) 37, 722
Psp6I CCWGG 3 cut(s) 33, 376, 485
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 3 cut(s) 33, 376, 485
PspN4I GGNNCC 2 cut(s) 531, 623
PspPI GGNCC 3 cut(s) 37, 125, 722
PspPPI RGGWCCY 2 cut(s) 37, 722
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 2 cut(s) 15, 337
RsaNI GTAC 2 cut(s) 14, 336
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 3 cut(s) 429, 555, 630
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 101, 529, 542
Sau96I GGNCC 3 cut(s) 37, 125, 722
ScaI AGTACT 1 cut(s) 337
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 3 cut(s) 35, 378, 487
SduI GDGCHC 1 cut(s) 642
SetI ASST 7 cut(s) 39, 82, 465, 525, 681, 697, 724
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 516
SinI GGWCC 2 cut(s) 37, 722
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 5 cut(s) 200, 214, 247, 259, 302
SsiI CCGC 3 cut(s) 342, 511, 619
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 33, 376, 485
TaaI ACNGT 1 cut(s) 456
TaqI TCGA 1 cut(s) 121
TasI AATT 5 cut(s) 200, 214, 247, 259, 302
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 2 cut(s) 390, 396
Tru1I TTAA 3 cut(s) 429, 555, 630
Tru9I TTAA 3 cut(s) 429, 555, 630
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 1 cut(s) 605
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 2 cut(s) 37, 722
XapI RAATTY 1 cut(s) 200
XceI RCATGY 2 cut(s) 300, 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XspI CTAG 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.