Rh1AG035600

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000210
Physical Location & Seq
Forward (+)
6204435 .. 6204737
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG035600.1

Sequence Viewer

Length: 303 bp
ATGCCAACAGCTTTTGTCAACCACTTCAATGGATCAGCACTTTGCAAACTTCGAGGCCCTAGTGGAAAGTGCTGGGATGTAATATTGGAAGAGGAAAATAATGATATTTTCTTCCATAAAGGCTGGAATAAATTTGTGAATGATAATTCTTTGGAGGAAGGACACATTTTGGTTTTCAATTATGATGGCAATTCTTGGTTCAATGCGACAATCTATGATAATAGTGCATGTGAAATGGACATGGAAGCAGCCAAGACAAAGAGAAGTACTGGGGGTCTTGATGGTCAAAGGAGTAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

5.22

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 2 - 71 1.7e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 40
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 268
AgsI TTSAA 3 cut(s) 28, 178, 202
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 1 cut(s) 40
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 260
BccI CCATC 2 cut(s) 179, 275
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
BmcAI AGTACT 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 82
BseNI ACTGG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 57
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 32
BspANI GGCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 274
BssMI GATC 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 84
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstNSI RCATGY 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 228, 241
CviJI RGCY 4 cut(s) 11, 57, 123, 251
CviKI_1 RGCY 4 cut(s) 11, 57, 123, 251
CviQI GTAC 1 cut(s) 267
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 56
FaeI CATG 2 cut(s) 231, 244
FaiI YATR 6 cut(s) 117, 183, 216, 229, 242, 301
FatI CATG 2 cut(s) 227, 240
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 249
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 2 cut(s) 231, 244
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 45, 227
Hsp92II CATG 2 cut(s) 231, 244
Kzo9I GATC 1 cut(s) 32
LpnPI CCDG 3 cut(s) 58, 109, 255
Lsp1109I GCAGC 1 cut(s) 260
MaeI CTAG 1 cut(s) 60
MalI GATC 1 cut(s) 34
MboI GATC 1 cut(s) 32
MboII GAAGA 2 cut(s) 101, 103
MluCI AATT 4 cut(s) 131, 145, 178, 190
MnlI CCTC 3 cut(s) 47, 85, 148
MslI CAYNNNNRTG 1 cut(s) 27
NdeII GATC 1 cut(s) 32
NlaIII CATG 2 cut(s) 231, 244
NspI RCATGY 1 cut(s) 231
PkrI GCNGC 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 72
PspPI GGNCC 1 cut(s) 56
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 56
ScaI AGTACT 1 cut(s) 268
SetI ASST 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 4 cut(s) 131, 145, 178, 190
SspI AATATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 60
TaqI TCGA 1 cut(s) 52
TasI AATT 4 cut(s) 131, 145, 178, 190
TatI WGTACW 1 cut(s) 266
TseI GCWGC 1 cut(s) 248
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 231
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.