MD11G1251100.v1.1

B3 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000210
Physical Location & Seq
Reverse (-)
36325801 .. 36327867
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1251100.v1.1.491

Sequence Viewer

Length: 867 bp
ATGGCAAGGAAGCCAAAGAAACCATCTTTTTTCAAGATTCTCGCTGGTGACTTCTCTCAGGGTCTGCGTATACCACCTGCGTTTATTAGGAAGAACTTCAATGGACGATCACTTTGCAAATGTGATCTCAAAGGCCCTAGTGGAATACGGAGGACTGTGGGATTGGAAGAGAGGGAGAATGGCTTGTTCTTCCGCAATGGTTGGCAGGGTTTTGTGAAGGATCATCGTTTAGAAGCTGCTGATGTTTTGGTTTTTGATTATGATGGTGAAACTAAGTTTGATGTCAAAATCTATGATAGAAGTGCGTGTGAAAAAGATGTCGGAGCAGCCGTGAGGAATACACAAAATCAAGCTAGAGTAAAAGATGAAACTGGTGATCTTGACACTGAAAACTATAACGAAGTGCGCAAAATCAGACCGACTGGCAGAAGCAATTACTTCATTTCTGGGAAGAGGCATTATCATGTGGAAGATACAGCAACCGGATCCATCTTGTTGAAATTAGAGAATCAATGTTTTCTAGCGTTTTCAAACAAGAAACATTTACTACGTTGCGTGAGGATTCCGAAGCAACTAGCTGTAGATCATCGCCTTATGTCTAAGAATGCTGTAACTCTTCAAGATCCAGCTGGGAGATCATGGGTTATTCAACTCAGACTCAGAAGGGTTATTTCATCTCATCAGTTGGACATGTCAACAGGTTGGGTGCATTGTGTGAAAGCGAACCGGATTTCGCCGGGAGACACCATGATTTTTGAGTTTGTGAAGCAAGGTTTGATGAAAGTTCATATTTTTAGAAAAGGAGCAGTGAGAGGCGATAAGTGTCGTCTGGTGCTTGCTGGCCCTAATGTTAAAGCCGAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B3

Protein Analysis

289

Amino Acids

32.76

Weight (kDa)

9.92

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 10 - 100 7.9e-16 B3 DNA binding domain
B3 PF02362 182 - 267 2.8e-13 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000210)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66980
fragaria_vesca FvH4_2g27400 FvH4_2g27400 FvH4_2g27400 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_2g40960 FvH4_3g19710 FvH4_5g30470 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_6g23740 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g01780 FvH4_7g23440 FvH4_7g23440 FvH4_7g23440
malus_domestica MD03G1230100.v1.1 MD03G1230200.v1.1 MD04G1034500.v1.1 MD04G1034600.v1.1 MD08G1039500.v1.1 MD11G1250800.v1.1 MD11G1251100.v1.1 MD11G1251200.v1.1
prunus_persica Prupe.1G388000_v2.0.a1 Prupe.1G388000_v2.0.a1 Prupe.1G388100_v2.0.a1 Prupe.4G178000_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178100_v2.0.a1 Prupe.4G178200_v2.0.a1 Prupe.4G178300_v2.0.a1 Prupe.4G178400_v2.0.a1 Prupe.4G178500_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206300_v2.0.a1 Prupe.4G206800_v2.0.a1 Prupe.4G206900_v2.0.a1 Prupe.4G207000_v2.0.a1 Prupe.7G064600_v2.0.a1 Prupe.7G064600_v2.0.a1
pyrus_communis pycom03g17770 pycom04g02860 pycom04g02870 pycom08g03160 pycom11g22190 pycom11g22200 pycom11g22210 pycom11g22220
rosa_chinensis RchiOBHm_Chr1g0318651 RchiOBHm_Chr1g0318881 RchiOBHm_Chr1g0319011 RchiOBHm_Chr1g0356381 RchiOBHm_Chr3g0482191 RchiOBHm_Chr5g0033031 RchiOBHm_Chr5g0033041 RchiOBHm_Chr6g0296251 RchiOBHm_Chr6g0299611 RchiOBHm_Chr7g0208501 RchiOBHm_Chr7g0224941
rosa_laevigata RLG00000001845 RLG00000011405 RLG00000011713 RLG00000023362 RLG00000030508 RLG00000030520 RLG00000033444
rosa_multiflora Rmu_sc0000307.1_g000013 Rmu_sc0000986.1_g000010 Rmu_sc0000986.1_g000011 Rmu_sc0002895.1_g000002 Rmu_sc0003503.1_g000005 Rmu_ssc0000357.1_g000023
rosa_roxburghii Rroxscaffold_1G00046900 Rroxscaffold_1G00046920 Rroxscaffold_1G00046930 Rroxscaffold_1G00046940 Rroxscaffold_1G00047010 Rroxscaffold_1G00047020 Rroxscaffold_1G00047030 Rroxscaffold_1G00059830 Rroxscaffold_3G00234250 Rroxscaffold_4G00299610 Rroxscaffold_4G00321350 Rroxscaffold_4G00328680 Rroxscaffold_4G00329000 Rroxscaffold_6G00399560 Rroxscaffold_6G00399970 Rroxscaffold_7G00168510 Rroxscaffold_7G00171700 Rroxscaffold_7G00178360
rosa_rugosa Rorug01G0022500 Rorug01G0022800 Rorug01G0026400 Rorug03G0195600 Rorug05G0135400 Rorug06G0260100 Rorug06G0260200.1 Rorug06G0291000 Rorug06G0291100 Rorug06G0291100 Rorug07G0227000
rosa_samantha Rh1AG035600 Rh1AG038500 Rh1AG045500 Rh1BG031400 Rh1BG034700 Rh1CG034500 Rh1CG037200 Rh1CG048500 Rh1DG032800 Rh1DG035800 Rh1DG052700 Rh3AG247000 Rh3CG277700 Rh3DG274200 Rh5AG227900 Rh5AG228000 Rh5CG256800 Rh5CG256900 Rh5CG257100 Rh5DG234000 Rh5DG234200 Rh6AG401800 Rh6BG380000 Rh6BG410200 Rh6CG385400 Rh6CG415800 Rh6DG372600 Rh6DG403000 Rh7AG376300 Rh7BG362400 Rh7DG372500
rosa_wichuraiana Rw0G008540 Rw1G002780 Rw1G002970 Rw3G022090 Rw5G020870 Rw6G032430 Rw6G035160 Rw7G031430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc16I TGCGCA 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 70
AciI CCGC 1 cut(s) 193
AclWI GGATC 4 cut(s) 228, 480, 493, 617
AflIII ACRYGT 1 cut(s) 690
AgsI TTSAA 6 cut(s) 34, 100, 499, 531, 620, 650
AluBI AGCT 5 cut(s) 236, 353, 578, 629, 864
AluI AGCT 5 cut(s) 236, 353, 578, 629, 864
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 4 cut(s) 228, 480, 493, 617
AlwNI CAGNNNCTG 1 cut(s) 64
AoxI GGCC 2 cut(s) 133, 841
ApeKI GCWGC 2 cut(s) 236, 326
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 134, 842
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 3 cut(s) 59, 278, 386
BamHI GGATCC 1 cut(s) 485
BbvI GCAGC 2 cut(s) 223, 338
BccI CCATC 3 cut(s) 31, 257, 497
BceAI ACGGC 1 cut(s) 314
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 5 cut(s) 138, 354, 521, 575, 865
BfmI CTRYAG 1 cut(s) 579
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 2 cut(s) 237, 327
BlsI GCNGC 2 cut(s) 238, 328
Bme1390I CCNGG 1 cut(s) 738
BmgT120I GGNCC 2 cut(s) 134, 842
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 738
BpuMI CCSGG 1 cut(s) 738
BsaWI WCCGGW 2 cut(s) 482, 726
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bse1I ACTGG 2 cut(s) 376, 427
Bse3DI GCAATG 1 cut(s) 202
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 3 cut(s) 71, 667, 673
BseNI ACTGG 2 cut(s) 376, 427
BseXI GCAGC 2 cut(s) 223, 338
BseYI CCCAGC 1 cut(s) 629
BshFI GGCC 2 cut(s) 135, 843
BsiSI CCGG 3 cut(s) 483, 727, 737
BsmAI GTCTC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 2 cut(s) 135, 843
Bsp143I GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
BspACI CCGC 1 cut(s) 193
BspANI GGCC 2 cut(s) 135, 843
BspCNI CTCAG 3 cut(s) 70, 666, 672
BspLI GGNNCC 1 cut(s) 487
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 4 cut(s) 228, 480, 493, 617
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 2 cut(s) 376, 427
BssMI GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
BssNAI GTATAC 1 cut(s) 71
Bst1107I GTATAC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 3 cut(s) 162, 446, 621
BstC8I GCNNGC 2 cut(s) 837, 841
BstDEI CTNAG 5 cut(s) 57, 273, 600, 653, 659
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 8 cut(s) 110, 127, 223, 379, 488, 586, 625, 638
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 1 cut(s) 736
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 2 cut(s) 223, 338
BstX2I RGATCY 2 cut(s) 485, 622
BstYI RGATCY 2 cut(s) 485, 622
BstZ17I GTATAC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 135, 843
BtgZI GCGATG 1 cut(s) 572
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 384, 813
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 837, 841
CaiI CAGNNNCTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 2 cut(s) 134, 842
CviAII CATG 4 cut(s) 464, 639, 691, 748
DdeI CTNAG 5 cut(s) 57, 273, 600, 653, 659
DpnI GATC 8 cut(s) 109, 126, 222, 378, 487, 585, 624, 637
DpnII GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
Eam1104I CTCTTC 3 cut(s) 162, 446, 621
EarI CTCTTC 3 cut(s) 162, 446, 621
EcoO109I RGGNCCY 1 cut(s) 134
FaeI CATG 4 cut(s) 467, 642, 694, 751
FatI CATG 4 cut(s) 463, 638, 690, 747
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 237, 327
Fsp4HI GCNGC 2 cut(s) 237, 327
FspBI CTAG 5 cut(s) 138, 354, 521, 575, 865
FspI TGCGCA 1 cut(s) 407
GlaI GCGC 1 cut(s) 407
GluI GCNGC 2 cut(s) 237, 327
GsaI CCCAGC 1 cut(s) 633
HaeIII GGCC 2 cut(s) 135, 843
HapII CCGG 3 cut(s) 483, 727, 737
HhaI GCGC 1 cut(s) 408
Hin1II CATG 4 cut(s) 467, 642, 694, 751
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HincII GTYRAC 1 cut(s) 696
HindII GTYRAC 1 cut(s) 696
HinfI GANTC 4 cut(s) 37, 508, 562, 657
HpaII CCGG 3 cut(s) 483, 727, 737
HphI GGTGA 3 cut(s) 59, 278, 386
Hpy166II GTNNAC 2 cut(s) 71, 696
Hpy188I TCNGA 5 cut(s) 323, 416, 567, 656, 662
Hpy188III TCNNGA 3 cut(s) 34, 380, 620
Hpy8I GTNNAC 2 cut(s) 71, 696
HpyAV CCTTC 2 cut(s) 211, 657
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 2 cut(s) 117, 709
HpyF3I CTNAG 5 cut(s) 57, 273, 600, 653, 659
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 4 cut(s) 467, 642, 694, 751
HspAI GCGC 1 cut(s) 406
Kzo9I GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
LmnI GCTCC 2 cut(s) 323, 803
Lsp1109I GCAGC 2 cut(s) 223, 338
MaeI CTAG 5 cut(s) 138, 354, 521, 575, 865
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 2 cut(s) 47, 610
MalI GATC 8 cut(s) 109, 126, 222, 378, 487, 585, 624, 637
MboI GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
MboII GAAGA 6 cut(s) 103, 179, 181, 463, 482, 608
MflI RGATCY 2 cut(s) 485, 622
MluCI AATT 2 cut(s) 433, 500
MlyI GAGTC 1 cut(s) 651
MmeI TCCRAC 2 cut(s) 301, 666
MnlI CCTC 6 cut(s) 144, 165, 327, 447, 552, 806
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 852
MslI CAYNNNNRTG 1 cut(s) 462
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 3 cut(s) 483, 727, 737
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 610
NciI CCSGG 1 cut(s) 738
NdeII GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
NlaIII CATG 4 cut(s) 467, 642, 694, 751
NlaIV GGNNCC 1 cut(s) 487
NmuCI GTSAC 1 cut(s) 47
NsbI TGCGCA 1 cut(s) 407
NspI RCATGY 1 cut(s) 694
PaqCI CACCTGC 1 cut(s) 85
PciI ACATGT 1 cut(s) 690
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 3 cut(s) 37, 508, 562
PkrI GCNGC 2 cut(s) 238, 328
PleI GAGTC 1 cut(s) 651
PpsI GAGTC 1 cut(s) 651
PscI ACATGT 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 2 cut(s) 134, 842
PstNI CAGNNNCTG 1 cut(s) 64
PsuI RGATCY 2 cut(s) 485, 622
PvuII CAGCTG 1 cut(s) 629
RseI CAYNNNNRTG 1 cut(s) 462
SaqAI TTAA 1 cut(s) 852
SatI GCNGC 2 cut(s) 237, 327
Sau3AI GATC 8 cut(s) 107, 124, 220, 376, 485, 583, 622, 635
Sau96I GGNCC 2 cut(s) 134, 842
SchI GAGTC 1 cut(s) 651
ScrFI CCNGG 1 cut(s) 738
SetI ASST 9 cut(s) 79, 238, 355, 553, 580, 631, 703, 775, 866
SfcI CTRYAG 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 462
Sse9I AATT 2 cut(s) 433, 500
SsiI CCGC 1 cut(s) 193
SspMI CTAG 5 cut(s) 138, 354, 521, 575, 865
StyD4I CCNGG 1 cut(s) 736
TaaI ACNGT 1 cut(s) 157
TaiI ACGT 1 cut(s) 553
TaqII GACCGA 1 cut(s) 433
TasI AATT 2 cut(s) 433, 500
TfiI GAWTC 3 cut(s) 37, 508, 562
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 2 cut(s) 391, 813
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 2 cut(s) 236, 326
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 5 cut(s) 381, 430, 663, 776, 794
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 2 cut(s) 391, 813
XceI RCATGY 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 5 cut(s) 138, 354, 521, 575, 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.