Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007055

Physical Location & Seq

Genomic Coordinates Reverse (-)

4734000 .. 4739082

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG034800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAGTGCTACCGCGGATGGAGTGAAGTACTCGCCCGAGTGGTTGGTTAAGCACTCGAATGTTTCTGTTGAGGAGAAGCTTGACGAGCTTCGGCGTTTGATGGGCAAAGCCGAAGGTGATCCGTTAAGGATAGTTGGTGTAGGGGCAGGTGCTTGGGGGAGTGTTTTTGTTGCTATGTTGCAAGACACTTATGGACACCTGAGAGAGAAGGCGGTGGTGAGAATATGGAGAAGATCTGGAAGGTCTGTGGATAGAGCCACAGCTGAACATTTGTTTGAAGTGATCAATGCAAGGGAAGATGTGTTGAGGAGGCTGATTAGGCGGTGCGCTTACTTGAAGTATGTCGAGGGGAGATTAGGTGACCGGATACTTTATGCGGATGAGATATTGAGAGACGGGTTCTGTCTGAATATGATTGATACCCCTCTTTGCCCTTTGAAGGTTGTCACCAATTTGCAGGAGGCTGTGTGGGATGCTGATATTGTGGTGAATGGGCTGCCGTCTACTGAAACTCGTGTCGTGTTTGAAGAAATTAGTAGGTATTGGAGGGATAGAAAAACAATGCCAATCATAGTTTCTCTTTCAAAAGGTGTTGAAGCTGAATTGGCGCCTGAACCACGCATACTTACTCCCACTCAGATGATCCAGCGAGCGACTGGTGCTCCTGTTGAAAACATTCTCTACCTTGGAGGACCCAACATTGCCTCAGAGATATACAACAATGAATATGCTAATGCTCGGTTATGTGGAGCGGAAAAGTGGAGAAAGCCAATGGCTAAGTTTTTAAGGCAGCCACACTTCATTGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAATGTCTATGCCATTGGAGCTGGAATGGTAGCTGGGTTAACCAATGAGAGCGCCACCAGCAAATCTGTATACTTTGCACATTGTACATCAGAGATGATATTTATCACTCATTTGTTGGCAAAAGAACCAGAGAAGCTAGCAGGACCTTTATTGGCTGACACGTATGTAACCCTGTTGAAAGGTCGTAATGCATGGTATGGACAAAAGCTGGCCAATGGGGAGTTAAGCCTTGAAATGGGTGATAGCATCAAGGGGAAGGGTATGATTCAGGTATGGATCTCAATCATGTTAAATAGGGACAGAAAAACAAGCATGAGTTTGTTTAGAACTAAACTTGAAGTGACTGGCAATCCAAATGGAGTTAAAAAAGGGAGAGATGGGGAAGGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

415

Amino Acids

46.42

Weight (kDa)

8.78

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	146 - 245	3.9e-11	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C	PF07479	274 - 395	5.7e-15	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07690 AT3G07690
fragaria_vesca	FvH4_7g02020 FvH4_7g02020 FvH4_7g02190 FvH4_7g02190 FvH4_7g02190
malus_domestica	MD02G1297900.v1.1 MD07G1026300.v1.1
prunus_persica	Prupe.2G026500_v2.0.a1
pyrus_communis	pycom02g25080 pycom07g02000
rosa_chinensis	RchiOBHm_Chr1g0319021 RchiOBHm_Chr1g0319061
rosa_laevigata	RLG00000030507
rosa_multiflora	Rmu_sc0003503.1_g000006
rosa_roxburghii	Rroxscaffold_4G00328670
rosa_rugosa	Rorug01G0026400 Rorug01G0026500
rosa_samantha	Rh1AG038600 Rh1BG034800 Rh1CG037300 Rh1DG032700
rosa_wichuraiana	Rw1G002980 Rw1G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	607
AccBSI	CCGCTC	1 cut(s)	752
AccI	GTMKAC	2 cut(s)	503, 924
AccII	CGCG	1 cut(s)	14
AciI	CCGC	6 cut(s)	12, 14, 212, 322, 377, 752
AclWI	GGATC	3 cut(s)	113, 637, 1139
AcoI	YGGCCR	1 cut(s)	1065
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	2 cut(s)	29, 940
AfiI	CCNNNNNNNGG	2 cut(s)	439, 1090
AflIII	ACRYGT	1 cut(s)	1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	8 cut(s)	79, 88, 263, 599, 875, 887, 991, 1063
AluI	AGCT	8 cut(s)	79, 88, 263, 599, 875, 887, 991, 1063
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	3 cut(s)	113, 637, 1139
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	1065
ApeKI	GCWGC	2 cut(s)	496, 790
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	3 cut(s)	329, 610, 908
AspS9I	GGNCC	2 cut(s)	692, 998
AsuHPI	GGTGA	7 cut(s)	128, 229, 371, 439, 499, 830, 1106
AsuNHI	GCTAGC	1 cut(s)	991
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	2 cut(s)	692, 998
BalI	TGGCCA	1 cut(s)	1067
BanI	GGYRCC	1 cut(s)	607
BauI	CACGAG	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	483, 802
BccI	CCATC	3 cut(s)	11, 94, 1226
BceAI	ACGGC	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	992
BfoI	RGCGCY	2 cut(s)	611, 909
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	2 cut(s)	497, 791
BlsI	GCNGC	2 cut(s)	498, 792
BmcAI	AGTACT	1 cut(s)	29
Bme18I	GGWCC	2 cut(s)	692, 998
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	692, 998
BmiI	GGNNCC	2 cut(s)	609, 694
BmsI	GCATC	2 cut(s)	463, 1110
BmtI	GCTAGC	1 cut(s)	995
BsaAI	YACGTR	1 cut(s)	1017
BsaBI	GATNNNNATC	2 cut(s)	956, 1136
BsaHI	GRCGYC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	12, 685
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	6 cut(s)	343, 373, 452, 482, 646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 1090
Bse1I	ACTGG	2 cut(s)	661, 1204
Bse3DI	GCAATG	1 cut(s)	699
Bse8I	GATNNNNATC	2 cut(s)	956, 1136
BseDI	CCNNGG	2 cut(s)	12, 685
BseGI	GGATG	3 cut(s)	22, 385, 478
BseJI	GATNNNNATC	2 cut(s)	956, 1136
BseLI	CCNNNNNNNGG	2 cut(s)	439, 1090
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	191, 650, 720
BseNI	ACTGG	2 cut(s)	661, 1204
BseRI	GAGGAG	2 cut(s)	86, 322
BseXI	GCAGC	2 cut(s)	483, 802
BseYI	CCCAGC	1 cut(s)	887
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	1067
BshNI	GGYRCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	824, 1166
BslI	CCNNNNNNNGG	2 cut(s)	439, 1090
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	824, 1166
BsnI	GGCC	1 cut(s)	1067
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp1407I	TGTACA	1 cut(s)	938
Bsp143I	GATC	5 cut(s)	118, 233, 282, 642, 1131
BspACI	CCGC	6 cut(s)	12, 14, 212, 322, 377, 752
BspANI	GGCC	1 cut(s)	1067
BspCNI	CTCAG	3 cut(s)	192, 649, 719
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	609, 694
BspMI	ACCTGC	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	995
BspPI	GGATC	3 cut(s)	113, 637, 1139
BspT107I	GGYRCC	1 cut(s)	607
BsrBI	CCGCTC	1 cut(s)	752
BsrDI	GCAATG	1 cut(s)	699
BsrGI	TGTACA	1 cut(s)	938
BsrI	ACTGG	2 cut(s)	661, 1204
BssECI	CCNNGG	2 cut(s)	12, 685
BssMI	GATC	5 cut(s)	118, 233, 282, 642, 1131
BssNAI	GTATAC	1 cut(s)	925
BssNI	GRCGYC	1 cut(s)	608
BssSI	CACGAG	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	685
Bst1107I	GTATAC	1 cut(s)	925
Bst2BI	CACGAG	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	938
BstBAI	YACGTR	1 cut(s)	1017
BstC8I	GCNNGC	3 cut(s)	651, 993, 1065
BstDEI	CTNAG	4 cut(s)	200, 636, 706, 777
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	2 cut(s)	359, 818
BstF5I	GGATG	3 cut(s)	22, 385, 478
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	611, 909
BstHHI	GCGC	3 cut(s)	329, 610, 908
BstKTI	GATC	5 cut(s)	121, 236, 285, 645, 1134
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	5 cut(s)	118, 233, 282, 642, 1131
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 319, 605, 659, 872, 912
BstPI	GGTNACC	2 cut(s)	359, 818
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	483, 802
BstX2I	RGATCY	2 cut(s)	233, 1131
BstYI	RGATCY	2 cut(s)	233, 1131
BstZ17I	GTATAC	1 cut(s)	925
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	1067
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	22, 385, 478
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	651, 993, 1065
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	3 cut(s)	329, 610, 908
Cfr13I	GGNCC	2 cut(s)	692, 998
Cfr42I	CCGCGG	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	28, 939
CviAII	CATG	4 cut(s)	833, 1047, 1141, 1168
CviQI	GTAC	2 cut(s)	28, 939
DdeI	CTNAG	4 cut(s)	200, 636, 706, 777
DinI	GGCGCC	1 cut(s)	609
DpnI	GATC	5 cut(s)	120, 235, 284, 644, 1133
DpnII	GATC	5 cut(s)	118, 233, 282, 642, 1131
EaeI	YGGCCR	1 cut(s)	1065
Eco130I	CCWWGG	1 cut(s)	685
Eco47I	GGWCC	2 cut(s)	692, 998
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	2 cut(s)	359, 818
EcoO109I	RGGNCCY	2 cut(s)	692, 998
EcoO65I	GGTNACC	2 cut(s)	359, 818
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	1 cut(s)	1048
EgeI	GGCGCC	1 cut(s)	609
EheI	GGCGCC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	685
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	4 cut(s)	836, 1050, 1144, 1171
FaqI	GGGAC	2 cut(s)	824, 1166
FatI	CATG	4 cut(s)	832, 1046, 1140, 1167
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	2 cut(s)	503, 924
Fnu4HI	GCNGC	2 cut(s)	497, 791
FokI	GGATG	3 cut(s)	29, 392, 485
Fsp4HI	GCNGC	2 cut(s)	497, 791
FspBI	CTAG	1 cut(s)	992
GlaI	GCGC	3 cut(s)	328, 609, 907
GluI	GCNGC	2 cut(s)	497, 791
GsaI	CCCAGC	1 cut(s)	891
HaeII	RGCGCY	2 cut(s)	611, 909
HaeIII	GGCC	1 cut(s)	1067
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	3 cut(s)	329, 610, 908
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	836, 1050, 1144, 1171
Hin6I	GCGC	3 cut(s)	327, 608, 906
HinP1I	GCGC	3 cut(s)	327, 608, 906
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	1120
HpaI	GTTAAC	1 cut(s)	894
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	7 cut(s)	128, 229, 371, 439, 499, 830, 1106
Hpy166II	GTNNAC	3 cut(s)	504, 894, 925
Hpy188I	TCNGA	4 cut(s)	408, 639, 709, 946
Hpy188III	TCNNGA	2 cut(s)	237, 833
Hpy8I	GTNNAC	3 cut(s)	504, 894, 925
HpyAV	CCTTC	6 cut(s)	107, 202, 234, 433, 1105, 1232
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	5 cut(s)	181, 290, 457, 932, 1046
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 319, 605, 659, 872, 912
HpyF3I	CTNAG	4 cut(s)	200, 636, 706, 777
HpySE526I	ACGT	1 cut(s)	1016
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	836, 1050, 1144, 1171
HspAI	GCGC	3 cut(s)	327, 608, 906
KasI	GGCGCC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	282
KspAI	GTTAAC	1 cut(s)	894
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	118, 233, 282, 642, 1131
LmnI	GCTCC	3 cut(s)	667, 749, 872
Lsp1109I	GCAGC	2 cut(s)	483, 802
LweI	GCATC	2 cut(s)	463, 1110
MaeI	CTAG	1 cut(s)	992
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	6 cut(s)	359, 445, 818, 826, 1021, 1195
MalI	GATC	5 cut(s)	120, 235, 284, 644, 1133
MbiI	CCGCTC	1 cut(s)	752
MboI	GATC	5 cut(s)	118, 233, 282, 642, 1131
MboII	GAAGA	3 cut(s)	243, 308, 539
MflI	RGATCY	2 cut(s)	233, 1131
MhlI	GDGCHC	1 cut(s)	664
MlsI	TGGCCA	1 cut(s)	1067
MluCI	AATT	3 cut(s)	451, 531, 602
MluNI	TGGCCA	1 cut(s)	1067
Mly113I	GGCGCC	1 cut(s)	608
MnlI	CCTC	9 cut(s)	64, 300, 303, 340, 435, 454, 540, 683, 715
Mox20I	TGGCCA	1 cut(s)	1067
Mph1103I	ATGCAT	1 cut(s)	1048
MroXI	GAANNNNTTC	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	1067
MseI	TTAA	8 cut(s)	48, 125, 785, 851, 893, 1079, 1145, 1218
MslI	CAYNNNNRTG	2 cut(s)	57, 638
Msp20I	TGGCCA	1 cut(s)	1067
MspA1I	CMGCKG	2 cut(s)	14, 263
MspI	CCGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	6 cut(s)	85, 319, 605, 659, 872, 912
NarI	GGCGCC	1 cut(s)	608
NdeII	GATC	5 cut(s)	118, 233, 282, 642, 1131
NheI	GCTAGC	1 cut(s)	991
NlaIII	CATG	4 cut(s)	836, 1050, 1144, 1171
NlaIV	GGNNCC	2 cut(s)	609, 694
NmuCI	GTSAC	4 cut(s)	359, 445, 818, 1195
NsiI	ATGCAT	1 cut(s)	1048
PagI	TCATGA	1 cut(s)	832
PaqCI	CACCTGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	1120
PkrI	GCNGC	2 cut(s)	498, 792
PluTI	GGCGCC	1 cut(s)	611
Ppu21I	YACGTR	1 cut(s)	1017
PpuMI	RGGWCCY	2 cut(s)	692, 998
Psp5II	RGGWCCY	2 cut(s)	692, 998
PspEI	GGTNACC	2 cut(s)	359, 818
PspFI	CCCAGC	1 cut(s)	887
PspN4I	GGNNCC	2 cut(s)	609, 694
PspPI	GGNCC	2 cut(s)	692, 998
PspPPI	RGGWCCY	2 cut(s)	692, 998
PsrI	GAACNNNNNNTAC	2 cut(s)	606, 638
PsuI	RGATCY	2 cut(s)	233, 1131
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	29, 940
RsaNI	GTAC	2 cut(s)	28, 939
RseI	CAYNNNNRTG	2 cut(s)	57, 638
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	8 cut(s)	48, 125, 785, 851, 893, 1079, 1145, 1218
SatI	GCNGC	2 cut(s)	497, 791
Sau3AI	GATC	5 cut(s)	118, 233, 282, 642, 1131
Sau96I	GGNCC	2 cut(s)	692, 998
ScaI	AGTACT	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	463, 1110
SfoI	GGCGCC	1 cut(s)	609
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SinI	GGWCC	2 cut(s)	692, 998
SmiMI	CAYNNNNRTG	2 cut(s)	57, 638
Sse9I	AATT	3 cut(s)	451, 531, 602
SsiI	CCGC	6 cut(s)	12, 14, 212, 322, 377, 752
SspDI	GGCGCC	1 cut(s)	607
SspMI	CTAG	1 cut(s)	992
StyI	CCWWGG	1 cut(s)	685
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	2 cut(s)	56, 345
TasI	AATT	3 cut(s)	451, 531, 602
TatI	WGTACW	2 cut(s)	27, 938
TfiI	GAWTC	1 cut(s)	1120
Tru1I	TTAA	8 cut(s)	48, 125, 785, 851, 893, 1079, 1145, 1218
Tru9I	TTAA	8 cut(s)	48, 125, 785, 851, 893, 1079, 1145, 1218
TseFI	GTSAC	4 cut(s)	359, 445, 818, 1195
TseI	GCWGC	2 cut(s)	496, 790
Tsp45I	GTSAC	4 cut(s)	359, 445, 818, 1195
TspDTI	ATGAA	3 cut(s)	738, 790, 849
TspGWI	ACGGA	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	692, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmiI	GTMKAC	2 cut(s)	503, 924
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	992
ZrmI	AGTACT	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.