Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007055

Physical Location & Seq

Genomic Coordinates Forward (+)

61767391 .. 61773774

Gene Structure 6384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGAGTGCTACCGCGGATGGAGTGAAGTACTCACCCGAGTGGTTGGTTAAGCACTCGAATGTTTCTGTTGAGGAGAAGCTTGACGAGCTTCGGCGTTTGATGGGCAAAGCCGAAGGTGATCCGTTAAGGATAGTTGGTGTAGGGGCAGGTGCTTGGGGAAGTGTTTTTGTTGCTATGTTGCAAGATACTTATGGACACTTGAGAGAGAAGGCGGTGGTGAGAATATGGAGAAGATCTGGAAGGTCTGTGGATAGAGCCACAGCCGAACATTTGTTTGAAGTGATCAATGCAAGGGAAGATGTGTTGAGGAGGCTGATTAGGCGGTGCGCTTACTTGAAGTATGTCGAGGGGAGATTAGGGGACCGGATACTTTTTGCGGATGAGATATTGAGAGACGGGTTCTGTCTGAATATGATTGACACCCCTCTTTGCCCTTTGAAGGTTGTCACCAATTTGCAGGAGGCTGTGTGGGATGCTGATATTGTGGTGAATGGGCTGCCGTCAACTGAAACTCGTGTCGTGTTTGAAGAAATTAGTAGGTATTGGAGGGATAGGAAAACAATGCCAATCATAGTTTCTCTTTCAAAAGGTGTTGAAGCTGAATTGGCGCCTGAACCACGCATACTTACTCCCACTCAGATGATCCAGCGAGCAAGTAAGGCTGCATTTTTTGCTTTGATAGTTGGCAAATTTCAGGGTTCATGCACTGGTATAGAAGCTGGTGCTCCTGTTGAAAACATTCTCTACCTTGGAGGACCCAACATTGCCTCAGAGATATACAACAATGAATATGCTAATGCTCGGTTATGCGGAGCGGAAAAGTGGAGAAAGCCAATGGCTAAGTTTTTAAGGCAGCCACACTTCATTGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAATGTCTATGCCATTGGAGCTGGAATGGTAGCTGGGTTAACCAATGAGAGCGCCACCCAGCAAATCTGTATACTTTGCACATTGTACATCAGAGATGATATTTATCACTCATTTGTTGGCAAAAGAACCAGAGAAGCTAGCAGGACCTTTATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

358

Amino Acids

40.08

Weight (kDa)

8.4

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	146 - 266	9.8e-07	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07690 AT3G07690
fragaria_vesca	FvH4_7g02020 FvH4_7g02020 FvH4_7g02190 FvH4_7g02190 FvH4_7g02190
malus_domestica	MD02G1297900.v1.1 MD07G1026300.v1.1
prunus_persica	Prupe.2G026500_v2.0.a1
pyrus_communis	pycom02g25080 pycom07g02000
rosa_chinensis	RchiOBHm_Chr1g0319021 RchiOBHm_Chr1g0319061
rosa_laevigata	RLG00000030507
rosa_multiflora	Rmu_sc0003503.1_g000006
rosa_roxburghii	Rroxscaffold_4G00328670
rosa_rugosa	Rorug01G0026400 Rorug01G0026500
rosa_samantha	Rh1AG038600 Rh1BG034800 Rh1CG037300 Rh1DG032700
rosa_wichuraiana	Rw1G002980 Rw1G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	607
AccBSI	CCGCTC	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	988
AccII	CGCG	1 cut(s)	14
AciI	CCGC	7 cut(s)	12, 14, 212, 322, 377, 810, 815
AclWI	GGATC	2 cut(s)	113, 637
AcsI	RAATTY	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	2 cut(s)	29, 1004
AfiI	CCNNNNNNNGG	1 cut(s)	439
AgsI	TTSAA	7 cut(s)	278, 337, 439, 527, 585, 596, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AleI	CACNNNNGTG	1 cut(s)	37
AluBI	AGCT	7 cut(s)	79, 88, 599, 719, 938, 950, 1055
AluI	AGCT	7 cut(s)	79, 88, 599, 719, 938, 950, 1055
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	113, 637
Ama87I	CYCGRG	1 cut(s)	35
ApeKI	GCWGC	3 cut(s)	496, 662, 853
ApoI	RAATTY	1 cut(s)	689
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	3 cut(s)	329, 610, 971
AspS9I	GGNCC	3 cut(s)	361, 755, 1062
AsuHPI	GGTGA	6 cut(s)	24, 128, 229, 439, 499, 893
AsuNHI	GCTAGC	1 cut(s)	1055
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	3 cut(s)	361, 755, 1062
BanI	GGYRCC	1 cut(s)	607
BauI	CACGAG	1 cut(s)	513
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	3 cut(s)	483, 649, 865
BccI	CCATC	2 cut(s)	11, 94
BceAI	ACGGC	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	1056
BfoI	RGCGCY	2 cut(s)	611, 972
BfuAI	ACCTGC	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	233
BisI	GCNGC	3 cut(s)	497, 663, 854
BlsI	GCNGC	3 cut(s)	498, 664, 855
BmcAI	AGTACT	1 cut(s)	29
Bme18I	GGWCC	3 cut(s)	361, 755, 1062
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	361, 755, 1062
BmiI	GGNNCC	3 cut(s)	362, 609, 757
BmsI	GCATC	1 cut(s)	463
BmtI	GCTAGC	1 cut(s)	1059
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaHI	GRCGYC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	12, 748
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	712
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	1 cut(s)	1020
BseDI	CCNNGG	2 cut(s)	12, 748
BseGI	GGATG	3 cut(s)	22, 385, 478
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	2 cut(s)	650, 783
BseNI	ACTGG	1 cut(s)	712
BseRI	GAGGAG	2 cut(s)	86, 322
BseXI	GCAGC	3 cut(s)	483, 649, 865
BseYI	CCCAGC	2 cut(s)	950, 975
Bsh1236I	CGCG	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	607
BsiHKAI	GWGCWC	1 cut(s)	727
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	374, 887
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	374, 887
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	727
Bsp1407I	TGTACA	1 cut(s)	1002
Bsp143I	GATC	4 cut(s)	118, 233, 282, 642
BspACI	CCGC	7 cut(s)	12, 14, 212, 322, 377, 810, 815
BspCNI	CTCAG	2 cut(s)	649, 782
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	3 cut(s)	362, 609, 757
BspMI	ACCTGC	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	1059
BspPI	GGATC	2 cut(s)	113, 637
BspT107I	GGYRCC	1 cut(s)	607
BsrBI	CCGCTC	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	762
BsrGI	TGTACA	1 cut(s)	1002
BsrI	ACTGG	1 cut(s)	712
BssECI	CCNNGG	2 cut(s)	12, 748
BssMI	GATC	4 cut(s)	118, 233, 282, 642
BssNAI	GTATAC	1 cut(s)	989
BssNI	GRCGYC	1 cut(s)	608
BssSI	CACGAG	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	748
Bst1107I	GTATAC	1 cut(s)	989
Bst2BI	CACGAG	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	671
BstAUI	TGTACA	1 cut(s)	1002
BstC8I	GCNNGC	2 cut(s)	651, 1057
BstDEI	CTNAG	3 cut(s)	636, 769, 840
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	881
BstF5I	GGATG	3 cut(s)	22, 385, 478
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	2 cut(s)	611, 972
BstHHI	GCGC	3 cut(s)	329, 610, 971
BstKTI	GATC	4 cut(s)	121, 236, 285, 645
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	4 cut(s)	118, 233, 282, 642
BstMWI	GCNNNNNNNGC	6 cut(s)	85, 319, 605, 659, 671, 935
BstPI	GGTNACC	1 cut(s)	881
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	483, 649, 865
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
BstZ17I	GTATAC	1 cut(s)	989
BsuI	GTATCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	3 cut(s)	22, 385, 478
BtsIMutI	CAGTG	1 cut(s)	705
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	651, 1057
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	3 cut(s)	329, 610, 971
Cfr13I	GGNCC	3 cut(s)	361, 755, 1062
Cfr42I	CCGCGG	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	28, 1003
CviAII	CATG	2 cut(s)	702, 896
CviQI	GTAC	2 cut(s)	28, 1003
DdeI	CTNAG	3 cut(s)	636, 769, 840
DinI	GGCGCC	1 cut(s)	609
DpnI	GATC	4 cut(s)	120, 235, 284, 644
DpnII	GATC	4 cut(s)	118, 233, 282, 642
Eco130I	CCWWGG	1 cut(s)	748
Eco47I	GGWCC	3 cut(s)	361, 755, 1062
Eco88I	CYCGRG	1 cut(s)	35
Eco91I	GGTNACC	1 cut(s)	881
EcoO109I	RGGNCCY	2 cut(s)	755, 1062
EcoO65I	GGTNACC	1 cut(s)	881
EcoT14I	CCWWGG	1 cut(s)	748
EgeI	GGCGCC	1 cut(s)	609
EheI	GGCGCC	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	748
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	2 cut(s)	705, 899
FaqI	GGGAC	2 cut(s)	374, 887
FatI	CATG	2 cut(s)	701, 895
FbaI	TGATCA	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	3 cut(s)	497, 663, 854
FokI	GGATG	3 cut(s)	29, 392, 485
Fsp4HI	GCNGC	3 cut(s)	497, 663, 854
FspBI	CTAG	1 cut(s)	1056
GlaI	GCGC	3 cut(s)	328, 609, 970
GluI	GCNGC	3 cut(s)	497, 663, 854
GsaI	CCCAGC	2 cut(s)	954, 979
HaeII	RGCGCY	2 cut(s)	611, 972
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	3 cut(s)	329, 610, 971
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	2 cut(s)	705, 899
Hin6I	GCGC	3 cut(s)	327, 608, 969
HinP1I	GCGC	3 cut(s)	327, 608, 969
HincII	GTYRAC	2 cut(s)	504, 957
HindII	GTYRAC	2 cut(s)	504, 957
HindIII	AAGCTT	1 cut(s)	77
HpaI	GTTAAC	1 cut(s)	957
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	6 cut(s)	24, 128, 229, 439, 499, 893
Hpy166II	GTNNAC	3 cut(s)	504, 957, 989
Hpy188I	TCNGA	4 cut(s)	408, 639, 772, 1010
Hpy188III	TCNNGA	2 cut(s)	237, 896
Hpy8I	GTNNAC	3 cut(s)	504, 957, 989
HpyAV	CCTTC	4 cut(s)	107, 202, 234, 433
HpyCH4V	TGCA	6 cut(s)	181, 290, 457, 665, 705, 996
HpyF10VI	GCNNNNNNNGC	6 cut(s)	85, 319, 605, 659, 671, 935
HpyF3I	CTNAG	3 cut(s)	636, 769, 840
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	2 cut(s)	705, 899
HspAI	GCGC	3 cut(s)	327, 608, 969
KasI	GGCGCC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	282
KspAI	GTTAAC	1 cut(s)	957
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	118, 233, 282, 642
LmnI	GCTCC	3 cut(s)	730, 812, 935
Lsp1109I	GCAGC	3 cut(s)	483, 649, 865
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	1056
MaeIII	GTNAC	3 cut(s)	445, 881, 889
MalI	GATC	4 cut(s)	120, 235, 284, 644
MbiI	CCGCTC	1 cut(s)	815
MboI	GATC	4 cut(s)	118, 233, 282, 642
MboII	GAAGA	3 cut(s)	243, 308, 539
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	727
MluCI	AATT	4 cut(s)	451, 531, 602, 689
Mly113I	GGCGCC	1 cut(s)	608
MnlI	CCTC	9 cut(s)	64, 300, 303, 340, 435, 454, 540, 746, 778
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	5 cut(s)	48, 125, 848, 914, 956
MslI	CAYNNNNRTG	3 cut(s)	37, 57, 638
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	364
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	6 cut(s)	85, 319, 605, 659, 671, 935
NarI	GGCGCC	1 cut(s)	608
NdeII	GATC	4 cut(s)	118, 233, 282, 642
NheI	GCTAGC	1 cut(s)	1055
NlaIII	CATG	2 cut(s)	705, 899
NlaIV	GGNNCC	3 cut(s)	362, 609, 757
NmuCI	GTSAC	2 cut(s)	445, 881
OliI	CACNNNNGTG	1 cut(s)	37
PagI	TCATGA	1 cut(s)	895
PaqCI	CACCTGC	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	738
PkrI	GCNGC	3 cut(s)	498, 664, 855
PluTI	GGCGCC	1 cut(s)	611
PpuMI	RGGWCCY	2 cut(s)	755, 1062
Psp5II	RGGWCCY	2 cut(s)	755, 1062
PspEI	GGTNACC	1 cut(s)	881
PspFI	CCCAGC	2 cut(s)	950, 975
PspN4I	GGNNCC	3 cut(s)	362, 609, 757
PspPI	GGNCC	3 cut(s)	361, 755, 1062
PspPPI	RGGWCCY	2 cut(s)	755, 1062
PsrI	GAACNNNNNNTAC	2 cut(s)	606, 638
PsuI	RGATCY	1 cut(s)	233
RsaI	GTAC	2 cut(s)	29, 1004
RsaNI	GTAC	2 cut(s)	28, 1003
RseI	CAYNNNNRTG	3 cut(s)	37, 57, 638
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	5 cut(s)	48, 125, 848, 914, 956
SatI	GCNGC	3 cut(s)	497, 663, 854
Sau3AI	GATC	4 cut(s)	118, 233, 282, 642
Sau96I	GGNCC	3 cut(s)	361, 755, 1062
ScaI	AGTACT	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	727
SfaNI	GCATC	1 cut(s)	463
SfoI	GGCGCC	1 cut(s)	609
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SinI	GGWCC	3 cut(s)	361, 755, 1062
SmiMI	CAYNNNNRTG	3 cut(s)	37, 57, 638
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	4 cut(s)	451, 531, 602, 689
SsiI	CCGC	7 cut(s)	12, 14, 212, 322, 377, 810, 815
SspDI	GGCGCC	1 cut(s)	607
SspMI	CTAG	1 cut(s)	1056
StyI	CCWWGG	1 cut(s)	748
TaqI	TCGA	2 cut(s)	56, 345
TasI	AATT	4 cut(s)	451, 531, 602, 689
TatI	WGTACW	2 cut(s)	27, 1002
Tru1I	TTAA	5 cut(s)	48, 125, 848, 914, 956
Tru9I	TTAA	5 cut(s)	48, 125, 848, 914, 956
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	2 cut(s)	445, 881
TseI	GCWGC	3 cut(s)	496, 662, 853
Tsp45I	GTSAC	2 cut(s)	445, 881
TspDTI	ATGAA	4 cut(s)	690, 801, 853, 912
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	712
VpaK11BI	GGWCC	3 cut(s)	361, 755, 1062
XapI	RAATTY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	988
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	1056
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.