FvH4_7g02020

glycerol-3-phosphate dehydrogenase NAD(

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
2389495 .. 2394013
4519 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02020.t1

Sequence Viewer

Length: 1404 bp
ATGAGTGCTACGGCTGATGGGGTCAAGTACTCACCCGACTGGTTGGTTAAACACTCAATTGTTTCTGTTGAGGAGAAGCTCGACGATCTTCGGCGTTTAATGGGCAAAGCTGAAGGTGATCCGGTCCGGATAGTTGGCGTAGGGGCTGGAGCTTGGGGGAGTGTGTTTGTTGCAATGTTGCAAGATAGTTATGGACACTTAAGAGAGAAGGCCGTGGTGAGAATATGGAGACGATCTGGAAGGCCTGTGGATAGAGCCACAGCTGAGCATTTGTTTGAAGTCATCAATTCAAGAGAAGATGTGTTGAGGAGGCTGATCAGGCGCTGTGCTTATTTGAAATATGTCGAGGCCAGATTAGGGGACCGGACACTTTTTGCGGATGAGATATTGAGAGATGGGTTCTGTCTGAATATGATTGACACTCCTCTTTGCCCTTTGAAGGTTGTCACCAATTTGCAGGAGGCTGTGTGGGATGCTGACATTGTGGTGAATGGGCTGCCTTCAACTGAGACTAGTGTTGTGTTTGAGGAGATTAGTAGGTATTGGAGAGATAGGAAGACAATGCCGATCATAATTTCTCTTTCAAAAGGTGTTGAAGCTGAATTGGTGCCTGAACCGCGGATAGTTACTCCCACTCAGATGATCCATCGAGCAACTGGTGCTCCTGTTGAAAACATTCTCTACCTTGGAGGACCCAACATTGCCTCAGAGATATACAACAATGAATATGCTAATGCTCGGTTATGTGGAGCTGAAAAGTGGACAAAGCCAATGGCCAAGTTTTTAAGGCAGCCACACTTCATTGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAATGTCTATGCGATTGGAGCTGGAATGGTAGCTGGGTTAACCAATGAGAGCGCCACCAGCAAATCTGTATACTTTGCACATTGTACATCAGAGATGATATTTATCACTCATTTATTGGCAGAAGAACCAGAGAAGCTAGCAGGACCTTTATTGGCTGACACGTATGTAACCTTGTTGAAAGGTCGTAACGCATGGTATGGACAAAAGCTGGCCAAGGGGGAGTTAAACCTTGAAATGGGTGATAGCATCAAGGGGAAGGGTATGATTCAGGGAGTCTCTGCTGTGAAAGCATTTTATGAGCTGCTTAGTCAGGCCTCTTTAAGTGTCAAACATCCTGAAGAAGACAGGCGCATTGTTCCTATTCAGCTTTGTCCTATCTTGAGGATTCTATATAGTATACTAATAAAAAGGGAGTTCCCTCCTGAGGCTATTCTTGAAGCTTTAAGGGATGAGACAATGCATGACCCTCGGGAGCGTATTGAGATTGCACAAACCCATGCTTTTTACAAGCCATTTCTTCTTGGTCAGCAGCAGCTTCCCTCTAAATAG

Protein Analysis

468

Amino Acids

52.41

Weight (kDa)

6.62

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 146 - 245 6.3e-10 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 274 - 423 1.8e-19 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 607
AccI GTMKAC 2 cut(s) 924, 1252
AccII CGCG 1 cut(s) 619
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 3 cut(s) 377, 617, 619
AclWI GGATC 2 cut(s) 113, 637
AcoI YGGCCR 2 cut(s) 774, 1065
AcuI CTGAAG 2 cut(s) 132, 1212
AfaI GTAC 2 cut(s) 29, 940
AfiI CCNNNNNNNGG 4 cut(s) 357, 439, 1090, 1279
AflII CTTAAG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 1014
AhlI ACTAGT 1 cut(s) 512
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 4 cut(s) 223, 503, 1135, 1301
AlwI GGATC 2 cut(s) 113, 637
AlwNI CAGNNNCTG 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 1323
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 6 cut(s) 210, 242, 348, 774, 1065, 1167
ApeKI GCWGC 5 cut(s) 496, 790, 1156, 1384, 1387
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 3 cut(s) 324, 908, 1206
AspS9I GGNCC 4 cut(s) 124, 361, 692, 998
AsuHPI GGTGA 7 cut(s) 24, 128, 229, 439, 499, 830, 1106
AsuNHI GCTAGC 1 cut(s) 991
AvaI CYCGRG 1 cut(s) 1323
AvaII GGWCC 4 cut(s) 124, 361, 692, 998
AxyI CCTNAGG 1 cut(s) 1278
BalI TGGCCA 2 cut(s) 776, 1067
BanI GGYRCC 1 cut(s) 607
BbsI GAAGAC 2 cut(s) 563, 1203
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 5 cut(s) 483, 802, 1143, 1396, 1399
BccI CCATC 3 cut(s) 11, 389, 654
BceAI ACGGC 2 cut(s) 27, 197
BcgI CGANNNNNNTGC 2 cut(s) 1304, 1338
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 4 cut(s) 223, 503, 1135, 1301
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 513, 992
BfoI RGCGCY 2 cut(s) 325, 909
BfrI CTTAAG 1 cut(s) 199
BisI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 5 cut(s) 498, 792, 1158, 1386, 1389
BmcAI AGTACT 1 cut(s) 29
Bme18I GGWCC 4 cut(s) 124, 361, 692, 998
BmeT110I CYCGRG 1 cut(s) 1323
BmgT120I GGNCC 4 cut(s) 124, 361, 692, 998
BmiI GGNNCC 3 cut(s) 362, 609, 694
BmsI GCATC 2 cut(s) 463, 1110
BmtI GCTAGC 1 cut(s) 995
BpiI GAAGAC 2 cut(s) 563, 1203
BpmI CTGGAG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 1255
BsaAI YACGTR 1 cut(s) 1017
BsaBI GATNNNNATC 1 cut(s) 956
BsaJI CCNNGG 5 cut(s) 213, 617, 685, 1068, 1322
BsaWI WCCGGW 3 cut(s) 121, 126, 363
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 646, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 357, 439, 1090, 1279
Bse1I ACTGG 2 cut(s) 44, 661
Bse21I CCTNAGG 1 cut(s) 1278
Bse3DI GCAATG 2 cut(s) 180, 699
Bse8I GATNNNNATC 1 cut(s) 956
BseAI TCCGGA 1 cut(s) 126
BseDI CCNNGG 5 cut(s) 213, 617, 685, 1068, 1322
BseGI GGATG 4 cut(s) 385, 478, 1186, 1309
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 4 cut(s) 357, 439, 1090, 1279
BseMI GCAATG 2 cut(s) 180, 699
BseMII CTCAG 5 cut(s) 255, 498, 650, 720, 1269
BseNI ACTGG 2 cut(s) 44, 661
BseRI GAGGAG 4 cut(s) 86, 322, 414, 542
BseXI GCAGC 5 cut(s) 483, 802, 1143, 1396, 1399
BseYI CCCAGC 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 619
BshFI GGCC 6 cut(s) 212, 244, 350, 776, 1067, 1169
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 664
BsiHKCI CYCGRG 1 cut(s) 1323
BsiSI CCGG 3 cut(s) 122, 127, 364
BslFI GGGAC 2 cut(s) 374, 824
BslI CCNNNNNNNGG 4 cut(s) 357, 439, 1090, 1279
BsmAI GTCTC 4 cut(s) 223, 503, 1135, 1301
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 374, 824
BsnI GGCC 6 cut(s) 212, 244, 350, 776, 1067, 1169
BsoBI CYCGRG 1 cut(s) 1323
Bsp1286I GDGCHC 1 cut(s) 664
Bsp13I TCCGGA 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 938
Bsp143I GATC 6 cut(s) 85, 118, 233, 315, 567, 642
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 3 cut(s) 377, 617, 619
BspANI GGCC 6 cut(s) 212, 244, 350, 776, 1067, 1169
BspCNI CTCAG 5 cut(s) 256, 499, 649, 719, 1270
BspEI TCCGGA 1 cut(s) 126
BspFNI CGCG 1 cut(s) 619
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 362, 609, 694
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 2 cut(s) 113, 637
BspT107I GGYRCC 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 180, 699
BsrGI TGTACA 1 cut(s) 938
BsrI ACTGG 2 cut(s) 44, 661
BssECI CCNNGG 5 cut(s) 213, 617, 685, 1068, 1322
BssMI GATC 6 cut(s) 85, 118, 233, 315, 567, 642
BssNAI GTATAC 2 cut(s) 925, 1253
BssT1I CCWWGG 2 cut(s) 685, 1068
Bst1107I GTATAC 2 cut(s) 925, 1253
BstAFI CTTAAG 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 938
BstBAI YACGTR 1 cut(s) 1017
BstC8I GCNNGC 2 cut(s) 993, 1065
BstDEI CTNAG 6 cut(s) 264, 507, 636, 706, 1160, 1278
BstDSI CCRYGG 2 cut(s) 213, 617
BstEII GGTNACC 1 cut(s) 818
BstF5I GGATG 4 cut(s) 385, 478, 1186, 1309
BstFNI CGCG 1 cut(s) 619
BstH2I RGCGCY 2 cut(s) 325, 909
BstHHI GCGC 3 cut(s) 324, 908, 1206
BstKTI GATC 6 cut(s) 88, 121, 236, 318, 570, 645
BstMAI GTCTC 4 cut(s) 223, 503, 1135, 1301
BstMBI GATC 6 cut(s) 85, 118, 233, 315, 567, 642
BstMWI GCNNNNNNNGC 6 cut(s) 319, 616, 659, 872, 912, 1142
BstPI GGTNACC 1 cut(s) 818
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 5 cut(s) 483, 802, 1143, 1396, 1399
BstV2I GAAGAC 2 cut(s) 563, 1203
BstZ17I GTATAC 2 cut(s) 925, 1253
Bsu36I CCTNAGG 1 cut(s) 1278
BsuRI GGCC 6 cut(s) 212, 244, 350, 776, 1067, 1169
BtgI CCRYGG 2 cut(s) 213, 617
BtsCI GGATG 4 cut(s) 385, 478, 1186, 1309
Cac8I GCNNGC 2 cut(s) 993, 1065
CaiI CAGNNNCTG 1 cut(s) 324
CciI TCATGA 1 cut(s) 832
CfoI GCGC 3 cut(s) 324, 908, 1206
Cfr13I GGNCC 4 cut(s) 124, 361, 692, 998
Cfr42I CCGCGG 1 cut(s) 620
CpoI CGGWCCG 1 cut(s) 124
Csp6I GTAC 2 cut(s) 28, 939
CspI CGGWCCG 1 cut(s) 124
CviAII CATG 4 cut(s) 833, 1047, 1316, 1352
CviQI GTAC 2 cut(s) 28, 939
DdeI CTNAG 6 cut(s) 264, 507, 636, 706, 1160, 1278
DpnI GATC 6 cut(s) 87, 120, 235, 317, 569, 644
DpnII GATC 6 cut(s) 85, 118, 233, 315, 567, 642
EaeI YGGCCR 2 cut(s) 774, 1065
Eco130I CCWWGG 2 cut(s) 685, 1068
Eco147I AGGCCT 2 cut(s) 244, 1169
Eco47I GGWCC 4 cut(s) 124, 361, 692, 998
Eco57I CTGAAG 2 cut(s) 132, 1212
Eco81I CCTNAGG 1 cut(s) 1278
Eco88I CYCGRG 1 cut(s) 1323
Eco91I GGTNACC 1 cut(s) 818
EcoO109I RGGNCCY 2 cut(s) 692, 998
EcoO65I GGTNACC 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 685, 1068
EcoT22I ATGCAT 1 cut(s) 1317
ErhI CCWWGG 2 cut(s) 685, 1068
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 4 cut(s) 836, 1050, 1319, 1355
FaqI GGGAC 2 cut(s) 374, 824
FatI CATG 4 cut(s) 832, 1046, 1315, 1351
FbaI TGATCA 1 cut(s) 315
FblI GTMKAC 2 cut(s) 924, 1252
Fnu4HI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
FokI GGATG 4 cut(s) 392, 485, 1173, 1316
Fsp4HI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
FspBI CTAG 2 cut(s) 513, 992
GlaI GCGC 3 cut(s) 323, 907, 1205
GluI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 2 cut(s) 325, 909
HaeIII GGCC 6 cut(s) 212, 244, 350, 776, 1067, 1169
HapII CCGG 3 cut(s) 122, 127, 364
HhaI GCGC 3 cut(s) 324, 908, 1206
Hin1II CATG 4 cut(s) 836, 1050, 1319, 1355
Hin6I GCGC 3 cut(s) 322, 906, 1204
HinP1I GCGC 3 cut(s) 322, 906, 1204
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 1293
HinfI GANTC 3 cut(s) 1120, 1128, 1240
HpaI GTTAAC 1 cut(s) 894
HpaII CCGG 3 cut(s) 122, 127, 364
HphI GGTGA 7 cut(s) 24, 128, 229, 439, 499, 830, 1106
Hpy166II GTNNAC 4 cut(s) 762, 894, 925, 1253
Hpy188I TCNGA 4 cut(s) 408, 639, 709, 946
Hpy188III TCNNGA 9 cut(s) 127, 237, 291, 833, 1190, 1234, 1277, 1289, 1325
Hpy8I GTNNAC 4 cut(s) 762, 894, 925, 1253
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 6 cut(s) 107, 202, 234, 433, 510, 1105
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 6 cut(s) 173, 181, 457, 932, 1315, 1343
HpyF10VI GCNNNNNNNGC 6 cut(s) 319, 616, 659, 872, 912, 1142
HpyF3I CTNAG 6 cut(s) 264, 507, 636, 706, 1160, 1278
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 4 cut(s) 836, 1050, 1319, 1355
HspAI GCGC 3 cut(s) 322, 906, 1204
Kpn2I TCCGGA 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 894
KspI CCGCGG 1 cut(s) 620
Kzo9I GATC 6 cut(s) 85, 118, 233, 315, 567, 642
LmnI GCTCC 5 cut(s) 149, 667, 749, 872, 1327
Lsp1109I GCAGC 5 cut(s) 483, 802, 1143, 1396, 1399
LweI GCATC 2 cut(s) 463, 1110
MaeI CTAG 2 cut(s) 513, 992
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 6 cut(s) 445, 625, 818, 826, 1021, 1040
MalI GATC 6 cut(s) 87, 120, 235, 317, 569, 644
MboI GATC 6 cut(s) 85, 118, 233, 315, 567, 642
MboII GAAGA 7 cut(s) 80, 308, 568, 989, 1205, 1208, 1364
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 2 cut(s) 776, 1067
MluCI AATT 5 cut(s) 57, 286, 451, 573, 602
MluNI TGGCCA 2 cut(s) 776, 1067
MlyI GAGTC 1 cut(s) 1137
Mox20I TGGCCA 2 cut(s) 776, 1067
Mph1103I ATGCAT 1 cut(s) 1317
MroI TCCGGA 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 2 cut(s) 776, 1067
MseI TTAA 9 cut(s) 48, 98, 200, 785, 851, 893, 1079, 1175, 1298
MslI CAYNNNNRTG 2 cut(s) 485, 638
Msp20I TGGCCA 2 cut(s) 776, 1067
MspA1I CMGCKG 2 cut(s) 263, 619
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 3 cut(s) 122, 127, 364
MunI CAATTG 1 cut(s) 57
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 6 cut(s) 319, 616, 659, 872, 912, 1142
NdeII GATC 6 cut(s) 85, 118, 233, 315, 567, 642
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 4 cut(s) 836, 1050, 1319, 1355
NlaIV GGNNCC 3 cut(s) 362, 609, 694
NmuCI GTSAC 2 cut(s) 445, 818
NsiI ATGCAT 1 cut(s) 1317
PagI TCATGA 1 cut(s) 832
PceI AGGCCT 2 cut(s) 244, 1169
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 1120, 1240
PkrI GCNGC 5 cut(s) 498, 792, 1158, 1386, 1389
PleI GAGTC 1 cut(s) 1136
PpsI GAGTC 1 cut(s) 1136
Ppu21I YACGTR 1 cut(s) 1017
PpuMI RGGWCCY 2 cut(s) 692, 998
Psp5II RGGWCCY 2 cut(s) 692, 998
PspEI GGTNACC 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 887
PspN4I GGNNCC 3 cut(s) 362, 609, 694
PspPI GGNCC 4 cut(s) 124, 361, 692, 998
PspPPI RGGWCCY 2 cut(s) 692, 998
PstNI CAGNNNCTG 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 29, 940
RsaNI GTAC 2 cut(s) 28, 939
RseI CAYNNNNRTG 2 cut(s) 485, 638
Rsr2I CGGWCCG 1 cut(s) 124
RsrII CGGWCCG 1 cut(s) 124
SacII CCGCGG 1 cut(s) 620
SaqAI TTAA 9 cut(s) 48, 98, 200, 785, 851, 893, 1079, 1175, 1298
SatI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
Sau3AI GATC 6 cut(s) 85, 118, 233, 315, 567, 642
Sau96I GGNCC 4 cut(s) 124, 361, 692, 998
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 1137
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 2 cut(s) 463, 1110
Sfr303I CCGCGG 1 cut(s) 620
SgrBI CCGCGG 1 cut(s) 620
SinI GGWCC 4 cut(s) 124, 361, 692, 998
SmiMI CAYNNNNRTG 2 cut(s) 485, 638
SmlI CTYRAG 2 cut(s) 199, 1234
SmoI CTYRAG 2 cut(s) 199, 1234
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 5 cut(s) 57, 286, 451, 573, 602
SseBI AGGCCT 2 cut(s) 244, 1169
SsiI CCGC 3 cut(s) 377, 617, 619
SspMI CTAG 2 cut(s) 513, 992
StuI AGGCCT 2 cut(s) 244, 1169
StyI CCWWGG 2 cut(s) 685, 1068
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 3 cut(s) 81, 345, 649
TasI AATT 5 cut(s) 57, 286, 451, 573, 602
TatI WGTACW 2 cut(s) 27, 938
TfiI GAWTC 2 cut(s) 1120, 1240
Tru1I TTAA 9 cut(s) 48, 98, 200, 785, 851, 893, 1079, 1175, 1298
Tru9I TTAA 9 cut(s) 48, 98, 200, 785, 851, 893, 1079, 1175, 1298
TseFI GTSAC 2 cut(s) 445, 818
TseI GCWGC 5 cut(s) 496, 790, 1156, 1384, 1387
Tsp45I GTSAC 2 cut(s) 445, 818
TspDTI ATGAA 3 cut(s) 738, 790, 849
Vha464I CTTAAG 1 cut(s) 199
VpaK11BI GGWCC 4 cut(s) 124, 361, 692, 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 924, 1252
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 513, 992
ZrmI AGTACT 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.