Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007055

Physical Location & Seq

Genomic Coordinates Reverse (-)

2722405 .. 2727231

Gene Structure 4827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G026500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGATTGGGACTTCTGATGCAGTGACCCATAATGCCTACTCAAATGGGTTGATTCAGCACTCAAATGATTCTGTTGAGGAGAAGCTTGATGAGCTTCGATGTCTAATGGGCAAAACAGAAGGTGATCCACTTAGGATAGTTGGTGTTGGTGCAGGTGCTTGGGGAAGTGTCTTTGCTGCTATGTTGCAAGATAGTTATGGTCACTTTAGAGAGAAGGTCCAAATAAGAATATGGAGACGACCAGGAAGATCTGTTGACAGAGCCACAGCAGAACATTTATTTGAAGTGATCAATTCAAGGGAAGATGTGCTGAGGAGACTGATTAGGCGGTGTGCTTACTTGAAGTATGTTGAGGCAAGATTAGGTGATCGGACGCTTTATGCAGATGAGTTACTGAAAGATGGGTTTTGCATCAATATGATTGACACCCCTCTTTGCCCTTTGAAGGTTGTCACAAATTTGCAGGAGGCTGTGTGGGATGCTGACATTGTGGTGAATGGGCTGCCATCAACAGAAACTCGTGTGGTATTTGAAGAAATTAGTAGGTACTGGAAAGAGAGAGTAACAATGCCAGTCATCATCTCTCTTTCAAAAGGTGTCGAGGCTGAATTGGAGCCTGAACCACGCATAATTACACCCACTCAAATTATCAATCGAGCAACTGGTGTTCCAAATGAGAACATTCTCTACCTTGGAGGACCTAATATTGCCTCAGAGATTTACAACAATGAATACGCTAATGCTCGCATATGTGGATCTGAAAAGTGGAGAAAGCCATTGGCCAAGTTTTTAAGGCAGCCCCACTTCATCGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGCGGATTGAAGAATGTGTATGCCATTGGAGCTGGAATGGTAGCTGCGTTAACCAATGAGAGTGCCACCAGCAAATCGGTATACTTCGCACATTGTACATCAGAGATGATATTTATCACCCATTTGTTGGCCGAAGAACCAGAGAGGCTAGCAGGGCCTTTGTTGGCTGACACATATGTAACCTTATTGAAAGGTCGTAATGCATGGTATGGACAAAAGCTGGCCAAAGGGGAGTTAACCCTTGAAATGGGTGATAGCATCAAGGGCAAGGGTATGATTCAGGGGGTCTCTGCTGTAAAAGCATTTTTTGAGCTGCTAAGTCAGCCCTCTTTAAGTATCCTACATCCTGAAGAGAACGAGCCCATTGCTCCAGTTGAGCTTTGCCCTATCTTGAAGATGCTATATAGAATACTTATAATAAGGGAGTTTCCACCACAGGCTATTCTTCAAGCGTTAAGGGATGAGACCATGAATGACCCTCGAGATCGTATTGCGATTGCACAAACCCATGCTTTTTACAGGCCATCCCTTCTTGGCCAGAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

466

Amino Acids

52.15

Weight (kDa)

6.01

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07690 AT3G07690
fragaria_vesca	FvH4_7g02020 FvH4_7g02020 FvH4_7g02190 FvH4_7g02190 FvH4_7g02190
malus_domestica	MD02G1297900.v1.1 MD07G1026300.v1.1
prunus_persica	Prupe.2G026500_v2.0.a1
pyrus_communis	pycom02g25080 pycom07g02000
rosa_chinensis	RchiOBHm_Chr1g0319021 RchiOBHm_Chr1g0319061
rosa_laevigata	RLG00000030507
rosa_multiflora	Rmu_sc0003503.1_g000006
rosa_roxburghii	Rroxscaffold_4G00328670
rosa_rugosa	Rorug01G0026400 Rorug01G0026500
rosa_samantha	Rh1AG038600 Rh1BG034800 Rh1CG037300 Rh1DG032700
rosa_wichuraiana	Rw1G002980 Rw1G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1265
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	976
AccI	GTMKAC	1 cut(s)	930
AciI	CCGC	2 cut(s)	328, 852
AclWI	GGATC	2 cut(s)	119, 763
AcoI	YGGCCR	4 cut(s)	780, 978, 1071, 1384
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	1218
AfaI	GTAC	2 cut(s)	548, 946
AfiI	CCNNNNNNNGG	3 cut(s)	445, 976, 1096
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	7 cut(s)	85, 94, 881, 893, 1069, 1162, 1228
AluI	AGCT	7 cut(s)	85, 94, 881, 893, 1069, 1162, 1228
Alw26I	GTCTC	4 cut(s)	229, 310, 1141, 1307
AlwI	GGATC	2 cut(s)	119, 763
Ama87I	CYCGRG	1 cut(s)	1329
AoxI	GGCC	6 cut(s)	780, 978, 1004, 1071, 1370, 1384
ApeKI	GCWGC	5 cut(s)	176, 502, 796, 893, 1162
ApoI	RAATTY	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	217, 698, 1004
AsuHPI	GGTGA	6 cut(s)	134, 377, 505, 836, 958, 1112
AsuNHI	GCTAGC	1 cut(s)	997
AvaI	CYCGRG	1 cut(s)	1329
AvaII	GGWCC	2 cut(s)	217, 698
BalI	TGGCCA	3 cut(s)	782, 1073, 1386
BanII	GRGCYC	1 cut(s)	1212
BauI	CACGAG	1 cut(s)	519
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	5 cut(s)	163, 489, 808, 880, 1149
BccI	CCATC	3 cut(s)	395, 514, 1381
BcgI	CGANNNNNNTGC	2 cut(s)	1196, 1230
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	1 cut(s)	1196
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	4 cut(s)	229, 310, 1141, 1307
BfaI	CTAG	1 cut(s)	998
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	1196
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	5 cut(s)	177, 503, 797, 894, 1163
BlsI	GCNGC	5 cut(s)	178, 504, 798, 895, 1164
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	2 cut(s)	217, 698
BmeT110I	CYCGRG	1 cut(s)	1329
BmgT120I	GGNCC	3 cut(s)	217, 698, 1004
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	5 cut(s)	7, 420, 469, 1116, 1236
BmtI	GCTAGC	1 cut(s)	1001
BpmI	CTGGAG	1 cut(s)	1203
Bpu10I	CCTNAGC	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	962
BsaI	GGTCTC	2 cut(s)	1141, 1307
BsaJI	CCNNGG	1 cut(s)	691
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 976, 1096
Bse1I	ACTGG	4 cut(s)	554, 572, 667, 1220
Bse3DI	GCAATG	1 cut(s)	1212
Bse8I	GATNNNNATC	1 cut(s)	962
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	4 cut(s)	484, 1192, 1315, 1373
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	3 cut(s)	445, 976, 1096
BseMI	GCAATG	1 cut(s)	1212
BseMII	CTCAG	2 cut(s)	302, 726
BseNI	ACTGG	4 cut(s)	554, 572, 667, 1220
BseRI	GAGGAG	2 cut(s)	92, 328
BseXI	GCAGC	5 cut(s)	163, 489, 808, 880, 1149
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	6 cut(s)	782, 980, 1006, 1073, 1372, 1386
BsiHKCI	CYCGRG	1 cut(s)	1329
BslFI	GGGAC	2 cut(s)	22, 830
BslI	CCNNNNNNNGG	3 cut(s)	445, 976, 1096
BsmAI	GTCTC	4 cut(s)	229, 310, 1141, 1307
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	2 cut(s)	22, 830
BsnI	GGCC	6 cut(s)	782, 980, 1006, 1073, 1372, 1386
Bso31I	GGTCTC	2 cut(s)	1141, 1307
BsoBI	CYCGRG	1 cut(s)	1329
Bsp1286I	GDGCHC	1 cut(s)	1212
Bsp1407I	TGTACA	1 cut(s)	944
Bsp143I	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
BspACI	CCGC	2 cut(s)	328, 852
BspANI	GGCC	6 cut(s)	782, 980, 1006, 1073, 1372, 1386
BspCNI	CTCAG	2 cut(s)	303, 725
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	1 cut(s)	615
BspMI	ACCTGC	1 cut(s)	143
BspOI	GCTAGC	1 cut(s)	1001
BspPI	GGATC	2 cut(s)	119, 763
BspTNI	GGTCTC	2 cut(s)	1141, 1307
BsrDI	GCAATG	1 cut(s)	1212
BsrGI	TGTACA	1 cut(s)	944
BsrI	ACTGG	4 cut(s)	554, 572, 667, 1220
BssECI	CCNNGG	1 cut(s)	691
BssMI	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
BssNAI	GTATAC	1 cut(s)	931
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	691
Bst1107I	GTATAC	1 cut(s)	931
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	1194
BstAUI	TGTACA	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	745, 999, 1071
BstDEI	CTNAG	4 cut(s)	131, 311, 712, 1166
BstEII	GGTNACC	1 cut(s)	824
BstF5I	GGATG	4 cut(s)	484, 1192, 1315, 1373
BstKTI	GATC	6 cut(s)	127, 251, 291, 370, 758, 1336
BstMAI	GTCTC	4 cut(s)	229, 310, 1141, 1307
BstMBI	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
BstMWI	GCNNNNNNNGC	6 cut(s)	91, 878, 1003, 1113, 1148, 1171
BstNI	CCWGG	1 cut(s)	243
BstPI	GGTNACC	1 cut(s)	824
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	5 cut(s)	163, 489, 808, 880, 1149
BstX2I	RGATCY	2 cut(s)	248, 755
BstYI	RGATCY	2 cut(s)	248, 755
BstZ17I	GTATAC	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	1196
BsuRI	GGCC	6 cut(s)	782, 980, 1006, 1073, 1372, 1386
BtsCI	GGATG	4 cut(s)	484, 1192, 1315, 1373
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	3 cut(s)	745, 999, 1071
CciI	TCATGA	1 cut(s)	838
Cfr13I	GGNCC	3 cut(s)	217, 698, 1004
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	547, 945
CviAII	CATG	4 cut(s)	839, 1053, 1318, 1358
CviQI	GTAC	2 cut(s)	547, 945
DdeI	CTNAG	4 cut(s)	131, 311, 712, 1166
DpnI	GATC	6 cut(s)	126, 250, 290, 369, 757, 1335
DpnII	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
EaeI	YGGCCR	4 cut(s)	780, 978, 1071, 1384
Eam1104I	CTCTTC	1 cut(s)	1194
EarI	CTCTTC	1 cut(s)	1194
EciI	GGCGGA	1 cut(s)	867
Eco130I	CCWWGG	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	1212
Eco31I	GGTCTC	2 cut(s)	1141, 1307
Eco47I	GGWCC	2 cut(s)	217, 698
Eco57I	CTGAAG	1 cut(s)	1218
Eco88I	CYCGRG	1 cut(s)	1329
Eco91I	GGTNACC	1 cut(s)	824
EcoO109I	RGGNCCY	2 cut(s)	698, 1004
EcoO65I	GGTNACC	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	1054
EcoT38I	GRGCYC	1 cut(s)	1212
ErhI	CCWWGG	1 cut(s)	691
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	4 cut(s)	842, 1056, 1321, 1361
FaqI	GGGAC	2 cut(s)	22, 830
FatI	CATG	4 cut(s)	838, 1052, 1317, 1357
FauNDI	CATATG	2 cut(s)	749, 1024
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	930
Fnu4HI	GCNGC	5 cut(s)	177, 503, 797, 894, 1163
FokI	GGATG	4 cut(s)	491, 1179, 1322, 1360
FriOI	GRGCYC	1 cut(s)	1212
Fsp4HI	GCNGC	5 cut(s)	177, 503, 797, 894, 1163
FspBI	CTAG	1 cut(s)	998
GluI	GCNGC	5 cut(s)	177, 503, 797, 894, 1163
GsuI	CTGGAG	1 cut(s)	1203
HaeIII	GGCC	6 cut(s)	782, 980, 1006, 1073, 1372, 1386
HgaI	GACGC	1 cut(s)	382
Hin1II	CATG	4 cut(s)	842, 1056, 1321, 1361
HincII	GTYRAC	3 cut(s)	256, 900, 1086
HindII	GTYRAC	3 cut(s)	256, 900, 1086
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	52, 68, 1126
HpaI	GTTAAC	2 cut(s)	900, 1086
HphI	GGTGA	6 cut(s)	134, 377, 505, 836, 958, 1112
Hpy166II	GTNNAC	4 cut(s)	256, 900, 931, 1086
Hpy188I	TCNGA	5 cut(s)	16, 372, 715, 760, 952
Hpy188III	TCNNGA	4 cut(s)	839, 1196, 1240, 1331
Hpy8I	GTNNAC	4 cut(s)	256, 900, 931, 1086
HpyAV	CCTTC	4 cut(s)	113, 208, 439, 1388
HpyCH4V	TGCA	8 cut(s)	20, 152, 187, 383, 411, 463, 1052, 1349
HpyF10VI	GCNNNNNNNGC	6 cut(s)	91, 878, 1003, 1113, 1148, 1171
HpyF3I	CTNAG	4 cut(s)	131, 311, 712, 1166
Hsp92II	CATG	4 cut(s)	842, 1056, 1321, 1361
Ksp22I	TGATCA	1 cut(s)	288
KspAI	GTTAAC	2 cut(s)	900, 1086
Kzo9I	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
LmnI	GCTCC	3 cut(s)	613, 878, 1222
Lsp1109I	GCAGC	5 cut(s)	163, 489, 808, 880, 1149
LweI	GCATC	5 cut(s)	7, 420, 469, 1116, 1236
MaeI	CTAG	1 cut(s)	998
MaeIII	GTNAC	8 cut(s)	22, 200, 390, 451, 562, 824, 832, 1027
MalI	GATC	6 cut(s)	126, 250, 290, 369, 757, 1335
MboI	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
MboII	GAAGA	8 cut(s)	258, 314, 545, 871, 995, 1211, 1255, 1286
MflI	RGATCY	2 cut(s)	248, 755
MhlI	GDGCHC	1 cut(s)	1212
MlsI	TGGCCA	3 cut(s)	782, 1073, 1386
MluCI	AATT	6 cut(s)	292, 457, 537, 608, 630, 645
MluNI	TGGCCA	3 cut(s)	782, 1073, 1386
Mox20I	TGGCCA	3 cut(s)	782, 1073, 1386
Mph1103I	ATGCAT	1 cut(s)	1054
MscI	TGGCCA	3 cut(s)	782, 1073, 1386
MseI	TTAA	5 cut(s)	791, 899, 1085, 1181, 1304
MslI	CAYNNNNRTG	3 cut(s)	63, 416, 491
Msp20I	TGGCCA	3 cut(s)	782, 1073, 1386
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	6 cut(s)	91, 878, 1003, 1113, 1148, 1171
NdeI	CATATG	2 cut(s)	749, 1024
NdeII	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
NheI	GCTAGC	1 cut(s)	997
NlaIII	CATG	4 cut(s)	842, 1056, 1321, 1361
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	4 cut(s)	22, 200, 451, 824
NsiI	ATGCAT	1 cut(s)	1054
PaeR7I	CTCGAG	1 cut(s)	1329
PagI	TCATGA	1 cut(s)	838
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	52, 68, 1126
PflMI	CCANNNNNTGG	1 cut(s)	976
PkrI	GCNGC	5 cut(s)	178, 504, 798, 895, 1164
PpuMI	RGGWCCY	1 cut(s)	698
PsiI	TTATAA	1 cut(s)	1265
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	241
PspEI	GGTNACC	1 cut(s)	824
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	3 cut(s)	217, 698, 1004
PspPPI	RGGWCCY	1 cut(s)	698
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
PsuI	RGATCY	2 cut(s)	248, 755
RsaI	GTAC	2 cut(s)	548, 946
RsaNI	GTAC	2 cut(s)	547, 945
RseI	CAYNNNNRTG	3 cut(s)	63, 416, 491
SaqAI	TTAA	5 cut(s)	791, 899, 1085, 1181, 1304
SatI	GCNGC	5 cut(s)	177, 503, 797, 894, 1163
Sau3AI	GATC	6 cut(s)	124, 248, 288, 367, 755, 1333
Sau96I	GGNCC	3 cut(s)	217, 698, 1004
ScrFI	CCNGG	1 cut(s)	243
SduI	GDGCHC	1 cut(s)	1212
SfaNI	GCATC	5 cut(s)	7, 420, 469, 1116, 1236
Sfr274I	CTCGAG	1 cut(s)	1329
SinI	GGWCC	2 cut(s)	217, 698
SlaI	CTCGAG	1 cut(s)	1329
SmiMI	CAYNNNNRTG	3 cut(s)	63, 416, 491
SmlI	CTYRAG	1 cut(s)	1329
SmoI	CTYRAG	1 cut(s)	1329
Sse9I	AATT	6 cut(s)	292, 457, 537, 608, 630, 645
SsiI	CCGC	2 cut(s)	328, 852
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	1 cut(s)	998
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	691
TaqI	TCGA	4 cut(s)	97, 600, 655, 1330
TasI	AATT	6 cut(s)	292, 457, 537, 608, 630, 645
TatI	WGTACW	1 cut(s)	944
TfiI	GAWTC	3 cut(s)	52, 68, 1126
Tru1I	TTAA	5 cut(s)	791, 899, 1085, 1181, 1304
Tru9I	TTAA	5 cut(s)	791, 899, 1085, 1181, 1304
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	4 cut(s)	22, 200, 451, 824
TseI	GCWGC	5 cut(s)	176, 502, 796, 893, 1162
Tsp45I	GTSAC	4 cut(s)	22, 200, 451, 824
TspDTI	ATGAA	4 cut(s)	744, 796, 855, 1334
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	976
VpaK11BI	GGWCC	2 cut(s)	217, 698
XapI	RAATTY	1 cut(s)	457
XhoI	CTCGAG	1 cut(s)	1329
XmiI	GTMKAC	1 cut(s)	930
XspI	CTAG	1 cut(s)	998
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.