Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007055

Physical Location & Seq

Genomic Coordinates Reverse (-)

1605108 .. 1608326

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGTTGGGAGTACTGATGGAGTGACCGATAAGGTCTACTCAAATGGATTGATTCACCACTCGAGTGATTCTGTTGAGGAGAAGCTTGATGAGCTTCGGCGACTAATGGGCAAAGCAGAAGGTGATCCACTTAGGATAGTTGGTGTCGGTGCAGGTGCTTGGGGAAGTGTATTTGTTGCTATGTTGCAAGATAGTTATGGTCATTTAAGAGATAAGGTCCTAATAAGAATATGGAGACGGCCAGGAAGATCTGTGGATAGAGCCACGGCAGAACATTTATTTGAAGTGATCAATTCAAGGGAAGATGTATTGAGGAGACTGATTAGGCGGTGTGCGTACTTAAAGTATGTTGAGGCAAGATTAGGTGACCGGACACTTTTTGCAGATGAGTTGCTGAAAGATGGGTTTTGTGTGAATATGATTGACACCCCTCTTTGCCCAATGAAGGTTGTCACAAATTTGCAGGAGGCTGTGTGGGATGCCGATATTGTGGTGAATGGGCTGCCATCAACAGAAACTCATGTCGTCTTTGAAGAAATTAGTAGGTACTGGAAAGAGAGAGTAACAATGCCAGTCATCATTTCACTTTCTAAAGGTGTTGAGGCTGAATTGGAGCCTGAACCGCGCATAATTACTCCTACTCAAATTATCAATCGAGCAACTGGTGTTCCGAATGAGAACATTCTCTACCTTGGAGGACCCAATATTGCCTCCGAGATTTACAACAATGAATATGCTAATGCTCGGATATGTGGAGCTGAAAAGTGGAGAAAACCCTTGGCTAAGTTTTTAAGGCAACCCCATTTTATAGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAACGTCTATGCCATTGGAGCTGGAATGGTAGCAGCATTAACCAACGAGAGCGCCACAAGCAAATCAGTATACTTTGCACATTGTACATCAGAGATGATTTTTATCACTCATCTGTTGGCAGAAGAACCAGAGAAGCTGGCAGGACCTTTGTTGGCTGACACGTATGTAACCCTGTTGAAAGGTCGTAATGCATGGTATGGACAAAAGCTGGCCAAAGGGGAATTAAGCCTTGAAATGGGTGATAGCATTAAGGGCAAGGGTATGATTCAGGGTGTCTCTGCTGTGAAAGCCTTTTTTGAGCTGCTAAGTCAGCCCTCTTTAAGTATCCTACATCCCGATGAGAAGAAGCCGGTTGCCCCCGTTGAGCTTTGCCCTATCTTAAAGATGCTATATAGAATTCTCATAATAAGGGAGTTCCCACCACAGGCTATTCTTCAAGCGTTACGGGACGAGACCATGAACGACCCTCGGGACCTTATTGCAATCGCACAAACCCATGCTTTTTACAGGCCATCTCTTCTTGGTCAGCAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

466

Amino Acids

51.93

Weight (kDa)

6.17

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	148 - 248	2.6e-10	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C	PF07479	276 - 423	4.4e-18	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07690 AT3G07690
fragaria_vesca	FvH4_7g02020 FvH4_7g02020 FvH4_7g02190 FvH4_7g02190 FvH4_7g02190
malus_domestica	MD02G1297900.v1.1 MD07G1026300.v1.1
prunus_persica	Prupe.2G026500_v2.0.a1
pyrus_communis	pycom02g25080 pycom07g02000
rosa_chinensis	RchiOBHm_Chr1g0319021 RchiOBHm_Chr1g0319061
rosa_laevigata	RLG00000030507
rosa_multiflora	Rmu_sc0003503.1_g000006
rosa_roxburghii	Rroxscaffold_4G00328670
rosa_rugosa	Rorug01G0026400 Rorug01G0026500
rosa_samantha	Rh1AG038600 Rh1BG034800 Rh1CG037300 Rh1DG032700
rosa_wichuraiana	Rw1G002980 Rw1G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccI	GTMKAC	2 cut(s)	36, 930
AccII	CGCG	1 cut(s)	625
AciI	CCGC	2 cut(s)	328, 623
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	2 cut(s)	239, 1071
AcsI	RAATTY	2 cut(s)	457, 1257
AfaI	GTAC	4 cut(s)	13, 338, 548, 946
AfiI	CCNNNNNNNGG	3 cut(s)	445, 1096, 1285
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	6 cut(s)	284, 297, 533, 1039, 1094, 1298
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	9 cut(s)	85, 94, 758, 881, 997, 1069, 1162, 1228, 1393
AluI	AGCT	9 cut(s)	85, 94, 758, 881, 997, 1069, 1162, 1228, 1393
Alw26I	GTCTC	4 cut(s)	229, 310, 1141, 1307
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	2 cut(s)	61, 1329
AoxI	GGCC	3 cut(s)	239, 1071, 1370
ApeKI	GCWGC	4 cut(s)	502, 893, 1162, 1390
ApoI	RAATTY	2 cut(s)	457, 1257
AspLEI	GCGC	2 cut(s)	627, 914
AspS9I	GGNCC	4 cut(s)	217, 698, 1004, 1333
AsuHPI	GGTGA	6 cut(s)	47, 134, 377, 505, 836, 1112
AvaI	CYCGRG	2 cut(s)	61, 1329
AvaII	GGWCC	4 cut(s)	217, 698, 1004, 1333
BalI	TGGCCA	1 cut(s)	1073
BbvI	GCAGC	3 cut(s)	489, 905, 1149
BccI	CCATC	4 cut(s)	11, 395, 514, 1381
BceAI	ACGGC	2 cut(s)	254, 282
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	1 cut(s)	1196
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	4 cut(s)	229, 310, 1141, 1307
BfoI	RGCGCY	1 cut(s)	915
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	1196
BglII	AGATCT	1 cut(s)	248
BisI	GCNGC	4 cut(s)	503, 894, 1163, 1391
BlsI	GCNGC	4 cut(s)	504, 895, 1164, 1392
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	4 cut(s)	217, 698, 1004, 1333
BmeT110I	CYCGRG	2 cut(s)	61, 1329
BmgT120I	GGNCC	4 cut(s)	217, 698, 1004, 1333
BmiI	GGNNCC	3 cut(s)	615, 700, 1334
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	2 cut(s)	469, 1236
BsaAI	YACGTR	1 cut(s)	1023
BsaBI	GATNNNNATC	1 cut(s)	962
BsaI	GGTCTC	1 cut(s)	1307
BsaJI	CCNNGG	4 cut(s)	264, 691, 777, 1328
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	458, 488
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 1096, 1285
Bse118I	RCCGGY	1 cut(s)	1210
Bse1I	ACTGG	3 cut(s)	554, 572, 667
Bse8I	GATNNNNATC	1 cut(s)	962
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	4 cut(s)	264, 691, 777, 1328
BseGI	GGATG	2 cut(s)	484, 1192
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	3 cut(s)	445, 1096, 1285
BseNI	ACTGG	3 cut(s)	554, 572, 667
BseRI	GAGGAG	2 cut(s)	92, 328
BseXI	GCAGC	3 cut(s)	489, 905, 1149
BsgI	GTGCAG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	625
BshFI	GGCC	3 cut(s)	241, 1073, 1372
BsiHKCI	CYCGRG	2 cut(s)	61, 1329
BsiSI	CCGG	2 cut(s)	370, 1211
BslFI	GGGAC	3 cut(s)	830, 1322, 1346
BslI	CCNNNNNNNGG	3 cut(s)	445, 1096, 1285
BsmAI	GTCTC	4 cut(s)	229, 310, 1141, 1307
BsmBI	CGTCTC	1 cut(s)	229
BsmFI	GGGAC	3 cut(s)	830, 1322, 1346
BsnI	GGCC	3 cut(s)	241, 1073, 1372
Bso31I	GGTCTC	1 cut(s)	1307
BsoBI	CYCGRG	2 cut(s)	61, 1329
Bsp1407I	TGTACA	1 cut(s)	944
Bsp143I	GATC	3 cut(s)	124, 248, 288
BspACI	CCGC	2 cut(s)	328, 623
BspANI	GGCC	3 cut(s)	241, 1073, 1372
BspFNI	CGCG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	615, 700, 1334
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	1307
BsrFI	RCCGGY	1 cut(s)	1210
BsrGI	TGTACA	1 cut(s)	944
BsrI	ACTGG	3 cut(s)	554, 572, 667
BssAI	RCCGGY	1 cut(s)	1210
BssECI	CCNNGG	4 cut(s)	264, 691, 777, 1328
BssMI	GATC	3 cut(s)	124, 248, 288
BssNAI	GTATAC	1 cut(s)	931
BssT1I	CCWWGG	2 cut(s)	691, 777
Bst1107I	GTATAC	1 cut(s)	931
Bst2UI	CCWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	1383
BstAUI	TGTACA	1 cut(s)	944
BstBAI	YACGTR	1 cut(s)	1023
BstC8I	GCNNGC	2 cut(s)	999, 1071
BstDEI	CTNAG	3 cut(s)	131, 783, 1166
BstDSI	CCRYGG	1 cut(s)	264
BstEII	GGTNACC	2 cut(s)	365, 824
BstF5I	GGATG	2 cut(s)	484, 1192
BstFNI	CGCG	1 cut(s)	625
BstH2I	RGCGCY	1 cut(s)	915
BstHHI	GCGC	2 cut(s)	627, 914
BstKTI	GATC	3 cut(s)	127, 251, 291
BstMAI	GTCTC	4 cut(s)	229, 310, 1141, 1307
BstMBI	GATC	3 cut(s)	124, 248, 288
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 622, 878, 918, 1113, 1148, 1171
BstNI	CCWGG	1 cut(s)	243
BstPI	GGTNACC	2 cut(s)	365, 824
BstSCI	CCNGG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	3 cut(s)	489, 905, 1149
BstX2I	RGATCY	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	248
BstZ17I	GTATAC	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	1196
BsuRI	GGCC	3 cut(s)	241, 1073, 1372
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	2 cut(s)	484, 1192
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	999, 1071
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	2 cut(s)	627, 914
Cfr10I	RCCGGY	1 cut(s)	1210
Cfr13I	GGNCC	4 cut(s)	217, 698, 1004, 1333
Csp6I	GTAC	4 cut(s)	12, 337, 547, 945
CviAII	CATG	5 cut(s)	521, 839, 1053, 1318, 1358
CviQI	GTAC	4 cut(s)	12, 337, 547, 945
DdeI	CTNAG	3 cut(s)	131, 783, 1166
DpnI	GATC	3 cut(s)	126, 250, 290
DpnII	GATC	3 cut(s)	124, 248, 288
EaeI	YGGCCR	2 cut(s)	239, 1071
Eam1104I	CTCTTC	1 cut(s)	1383
EarI	CTCTTC	1 cut(s)	1383
Eco130I	CCWWGG	2 cut(s)	691, 777
Eco31I	GGTCTC	1 cut(s)	1307
Eco47I	GGWCC	4 cut(s)	217, 698, 1004, 1333
Eco88I	CYCGRG	2 cut(s)	61, 1329
Eco91I	GGTNACC	2 cut(s)	365, 824
EcoO109I	RGGNCCY	4 cut(s)	217, 698, 1004, 1333
EcoO65I	GGTNACC	2 cut(s)	365, 824
EcoRI	GAATTC	1 cut(s)	1257
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	691, 777
EcoT22I	ATGCAT	1 cut(s)	1054
ErhI	CCWWGG	2 cut(s)	691, 777
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	5 cut(s)	524, 842, 1056, 1321, 1361
FaqI	GGGAC	3 cut(s)	830, 1322, 1346
FatI	CATG	5 cut(s)	520, 838, 1052, 1317, 1357
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	36, 930
Fnu4HI	GCNGC	4 cut(s)	503, 894, 1163, 1391
FokI	GGATG	2 cut(s)	491, 1179
Fsp4HI	GCNGC	4 cut(s)	503, 894, 1163, 1391
GlaI	GCGC	2 cut(s)	626, 913
GluI	GCNGC	4 cut(s)	503, 894, 1163, 1391
HaeII	RGCGCY	1 cut(s)	915
HaeIII	GGCC	3 cut(s)	241, 1073, 1372
HapII	CCGG	2 cut(s)	370, 1211
HhaI	GCGC	2 cut(s)	627, 914
Hin1II	CATG	5 cut(s)	524, 842, 1056, 1321, 1361
Hin6I	GCGC	2 cut(s)	625, 912
HinP1I	GCGC	2 cut(s)	625, 912
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	52, 68, 1126
HpaII	CCGG	2 cut(s)	370, 1211
HphI	GGTGA	6 cut(s)	47, 134, 377, 505, 836, 1112
Hpy166II	GTNNAC	2 cut(s)	37, 931
Hpy188I	TCNGA	4 cut(s)	672, 715, 747, 952
Hpy188III	TCNNGA	3 cut(s)	839, 1196, 1331
Hpy8I	GTNNAC	2 cut(s)	37, 931
HpyAV	CCTTC	2 cut(s)	113, 439
HpyCH4IV	ACGT	2 cut(s)	864, 1022
HpyCH4V	TGCA	7 cut(s)	152, 187, 383, 463, 938, 1052, 1343
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 622, 878, 918, 1113, 1148, 1171
HpyF3I	CTNAG	3 cut(s)	131, 783, 1166
HpySE526I	ACGT	2 cut(s)	864, 1022
Hsp92II	CATG	5 cut(s)	524, 842, 1056, 1321, 1361
HspAI	GCGC	2 cut(s)	625, 912
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	3 cut(s)	124, 248, 288
LmnI	GCTCC	3 cut(s)	613, 755, 878
Lsp1109I	GCAGC	3 cut(s)	489, 905, 1149
LweI	GCATC	2 cut(s)	469, 1236
MaeII	ACGT	2 cut(s)	864, 1022
MaeIII	GTNAC	8 cut(s)	22, 365, 451, 562, 824, 832, 1027, 1302
MalI	GATC	3 cut(s)	126, 250, 290
MboI	GATC	3 cut(s)	124, 248, 288
MboII	GAAGA	7 cut(s)	258, 314, 545, 995, 1216, 1286, 1370
MflI	RGATCY	1 cut(s)	248
MlsI	TGGCCA	1 cut(s)	1073
MluCI	AATT	8 cut(s)	292, 457, 537, 608, 630, 645, 1082, 1257
MluNI	TGGCCA	1 cut(s)	1073
Mox20I	TGGCCA	1 cut(s)	1073
Mph1103I	ATGCAT	1 cut(s)	1054
MscI	TGGCCA	1 cut(s)	1073
MseI	TTAA	9 cut(s)	206, 341, 791, 857, 899, 1085, 1110, 1181, 1241
MslI	CAYNNNNRTG	2 cut(s)	63, 1197
Msp20I	TGGCCA	1 cut(s)	1073
MspI	CCGG	2 cut(s)	370, 1211
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	1 cut(s)	625
MwoI	GCNNNNNNNGC	7 cut(s)	91, 622, 878, 918, 1113, 1148, 1171
NdeII	GATC	3 cut(s)	124, 248, 288
NlaIII	CATG	5 cut(s)	524, 842, 1056, 1321, 1361
NlaIV	GGNNCC	3 cut(s)	615, 700, 1334
NmuCI	GTSAC	4 cut(s)	22, 365, 451, 824
NsiI	ATGCAT	1 cut(s)	1054
OliI	CACNNNNGTG	1 cut(s)	63
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	838
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	52, 68, 1126
PkrI	GCNGC	4 cut(s)	504, 895, 1164, 1392
Ppu21I	YACGTR	1 cut(s)	1023
PpuMI	RGGWCCY	4 cut(s)	217, 698, 1004, 1333
Psp5II	RGGWCCY	4 cut(s)	217, 698, 1004, 1333
Psp6I	CCWGG	1 cut(s)	241
PspEI	GGTNACC	2 cut(s)	365, 824
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	3 cut(s)	615, 700, 1334
PspPI	GGNCC	4 cut(s)	217, 698, 1004, 1333
PspPPI	RGGWCCY	4 cut(s)	217, 698, 1004, 1333
PspXI	VCTCGAGB	1 cut(s)	61
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
PsuI	RGATCY	1 cut(s)	248
RsaI	GTAC	4 cut(s)	13, 338, 548, 946
RsaNI	GTAC	4 cut(s)	12, 337, 547, 945
RseI	CAYNNNNRTG	2 cut(s)	63, 1197
SaqAI	TTAA	9 cut(s)	206, 341, 791, 857, 899, 1085, 1110, 1181, 1241
SatI	GCNGC	4 cut(s)	503, 894, 1163, 1391
Sau3AI	GATC	3 cut(s)	124, 248, 288
Sau96I	GGNCC	4 cut(s)	217, 698, 1004, 1333
ScaI	AGTACT	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	243
SfaNI	GCATC	2 cut(s)	469, 1236
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	4 cut(s)	217, 698, 1004, 1333
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	63, 1197
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	8 cut(s)	292, 457, 537, 608, 630, 645, 1082, 1257
SsiI	CCGC	2 cut(s)	328, 623
SspI	AATATT	1 cut(s)	706
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	691, 777
TaiI	ACGT	2 cut(s)	867, 1025
TaqI	TCGA	2 cut(s)	62, 655
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	8 cut(s)	292, 457, 537, 608, 630, 645, 1082, 1257
TatI	WGTACW	2 cut(s)	11, 944
TfiI	GAWTC	3 cut(s)	52, 68, 1126
Tru1I	TTAA	9 cut(s)	206, 341, 791, 857, 899, 1085, 1110, 1181, 1241
Tru9I	TTAA	9 cut(s)	206, 341, 791, 857, 899, 1085, 1110, 1181, 1241
TseFI	GTSAC	4 cut(s)	22, 365, 451, 824
TseI	GCWGC	4 cut(s)	502, 893, 1162, 1390
Tsp45I	GTSAC	4 cut(s)	22, 365, 451, 824
TspDTI	ATGAA	4 cut(s)	458, 744, 855, 1334
VpaK11BI	GGWCC	4 cut(s)	217, 698, 1004, 1333
XapI	RAATTY	2 cut(s)	457, 1257
XhoI	CTCGAG	1 cut(s)	61
XmiI	GTMKAC	2 cut(s)	36, 930
ZrmI	AGTACT	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.