Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007055

Physical Location & Seq

Genomic Coordinates Forward (+)

35284889 .. 35290571

Gene Structure 5683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1297900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGTTGGGAGTACTGATGGAGTGACCGATAAGGTCTACTCAAATGGGTTGCTTCACCACTCAAGTGATTCTGTTGAGCAGAAGCTTGATGAGCTTCGGCGTTTAATGAGCAAAGCAGAAGGTGATCCGCTTAGGATAGTTGGTGTAGGTGCAGGTGCTTGGGGAAGTGTCTTTGTTGCTATGTTGCAAGATAGTTATGGTCATTTAAGAGATAAGGTCCTAATAAGAATATGGAGAAGACCAGGAAGATCAGTTGATAGAGCAACAGCAGAACATTTATTTGAAGTGATCAATTCAAGGGAGGATGTGCTGAGGAGACTGATTAGGCGCTGTGCGTATTTAAAGTATGTTGAGGCAAGATTAGGTGATCGGACGCTTTTTGCAGATGAGTTACTGAAAGATGGGTTTTGTGTGAATATGATTGATACCCCTCTTTGCCCTATGAAGGTTGTCACAAATTTGCAGGAGGCTGTTTGGGATGCTGATATTGTGGTGAATGGGCTGCCATCAACAGAAACTTGTGTGGTCTTTGAAGAAATTAGTAGGTACTGGAAAGAGAGAGTAACAATGCCAGTCATTATCTCTCTTTCAAAAGGTGTTGAAGCTGAATTGGAGCCTGAACCACGCATAATTACGCCCACTCAAATTATCAATCGAGCAACTGGTGTTCCCAATGAGAACATTCTCTACCTTGGAGGACCCAATATTGCCTCTGAGATTTACAACAACGAATATGCCAATGCTCGGATATGTGGAGCTGACAAGTGGAGAAAGCCCTTGGCTAAGTTTTTAAGGCAACCCCACTTTATAGTATGGGACAATGGGGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAACGTCTATGCCATTGGAGCTGGAATGGTAGCTGCCTTAACCAATGAGAGCGCCACAAGCAAATCAGTATACTTCGCACATTGTACATCAGAGATGATTTTTATCACTCATCTGTTGGCAGAAGAACCAGAGAAGCTGGCAGGGCCTTTGTTGGCTGACACGTATGTTACCCTGTTGAAAGGTCGTAATGCATGGTATGGACAAAAGCTGGCGAAAGGGGAGTTAAACCTTGAAATGGGTGATAGCATAAAGGGCAAGGGTATGATTCAGGGGGTCTCTGCTGTGAAAGCATTTTTTGAGCTGCTAAGTCAGCCCTCTTTAAGTATCCTGCATCCCAATGAGAAGAAGCCCGTTGCTCCCGTTGAGCTTTGCCCTATCTTGAAGATGCTATATAGAATACTCATAACTAGGGAGTTTCCGTCGCAGGCTATTCTTCAAGCGTTGCGGGACGAGACCATGAACGATCCTCGGGACCGTATTGCAATCGCACAAACGCATGCATTTTACAGGCCATCCCTTCTTGGTCAGCAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 ko04011 map00564 map01110 map04011

Pfam Domains

Protein Families

NAD_Gly3P_dh_C NAD_Gly3P_dh_N

Protein Analysis

466

Amino Acids

51.96

Weight (kDa)

6.58

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_Gly3P_dh_N	PF01210	148 - 250	7.2e-10	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C	PF07479	276 - 431	1.4e-18	NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07690 AT3G07690
fragaria_vesca	FvH4_7g02020 FvH4_7g02020 FvH4_7g02190 FvH4_7g02190 FvH4_7g02190
malus_domestica	MD02G1297900.v1.1 MD07G1026300.v1.1
prunus_persica	Prupe.2G026500_v2.0.a1
pyrus_communis	pycom02g25080 pycom07g02000
rosa_chinensis	RchiOBHm_Chr1g0319021 RchiOBHm_Chr1g0319061
rosa_laevigata	RLG00000030507
rosa_multiflora	Rmu_sc0003503.1_g000006
rosa_roxburghii	Rroxscaffold_4G00328670
rosa_rugosa	Rorug01G0026400 Rorug01G0026500
rosa_samantha	Rh1AG038600 Rh1BG034800 Rh1CG037300 Rh1DG032700
rosa_wichuraiana	Rw1G002980 Rw1G003020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccI	GTMKAC	2 cut(s)	36, 930
AciI	CCGC	2 cut(s)	128, 1306
AclWI	GGATC	2 cut(s)	119, 1319
AcsI	RAATTY	1 cut(s)	457
AfaI	GTAC	3 cut(s)	13, 548, 946
AfiI	CCNNNNNNNGG	3 cut(s)	445, 744, 1096
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	9 cut(s)	284, 297, 533, 591, 602, 1039, 1094, 1243, 1298
AjnI	CCWGG	1 cut(s)	241
AleI	CACNNNNGTG	1 cut(s)	63
Alw26I	GTCTC	3 cut(s)	310, 1141, 1307
AlwI	GGATC	2 cut(s)	119, 1319
Ama87I	CYCGRG	1 cut(s)	1329
AoxI	GGCC	2 cut(s)	1004, 1370
ApeKI	GCWGC	4 cut(s)	502, 893, 1162, 1390
ApoI	RAATTY	1 cut(s)	457
AspLEI	GCGC	2 cut(s)	330, 914
AspS9I	GGNCC	5 cut(s)	217, 698, 826, 1004, 1333
AsuHPI	GGTGA	5 cut(s)	47, 134, 377, 505, 1112
AvaI	CYCGRG	1 cut(s)	1329
AvaII	GGWCC	4 cut(s)	217, 698, 826, 1333
BbsI	GAAGAC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	489, 880, 1149
BccI	CCATC	4 cut(s)	11, 395, 514, 1381
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	1 cut(s)	1196
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	310, 1141, 1307
BfaI	CTAG	1 cut(s)	1269
BfoI	RGCGCY	2 cut(s)	331, 915
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	1196
BisI	GCNGC	4 cut(s)	503, 894, 1163, 1391
BlsI	GCNGC	4 cut(s)	504, 895, 1164, 1392
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	243
Bme18I	GGWCC	4 cut(s)	217, 698, 826, 1333
BmeT110I	CYCGRG	1 cut(s)	1329
BmgT120I	GGNCC	5 cut(s)	217, 698, 826, 1004, 1333
BmiI	GGNNCC	4 cut(s)	615, 700, 827, 1334
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	3 cut(s)	469, 1201, 1236
BpiI	GAAGAC	1 cut(s)	244
Bpu10I	CCTNAGC	2 cut(s)	131, 311
BpuEI	CTTGAG	1 cut(s)	46
BsaAI	YACGTR	1 cut(s)	1023
BsaBI	GATNNNNATC	1 cut(s)	962
BsaI	GGTCTC	2 cut(s)	1141, 1307
BsaJI	CCNNGG	3 cut(s)	691, 777, 1328
BsaXI	ACNNNNNCTCC	2 cut(s)	1265, 1295
Bsc4I	CCNNNNNNNGG	3 cut(s)	445, 744, 1096
Bse1I	ACTGG	3 cut(s)	554, 572, 667
Bse8I	GATNNNNATC	1 cut(s)	962
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	691, 777, 1328
BseGI	GGATG	4 cut(s)	310, 484, 1192, 1373
BseJI	GATNNNNATC	1 cut(s)	962
BseLI	CCNNNNNNNGG	3 cut(s)	445, 744, 1096
BseMII	CTCAG	2 cut(s)	302, 705
BseNI	ACTGG	3 cut(s)	554, 572, 667
BseRI	GAGGAG	1 cut(s)	328
BseXI	GCAGC	3 cut(s)	489, 880, 1149
BsgI	GTGCAG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	1006, 1372
BsiHKCI	CYCGRG	1 cut(s)	1329
BslFI	GGGAC	4 cut(s)	830, 839, 1322, 1346
BslI	CCNNNNNNNGG	3 cut(s)	445, 744, 1096
BsmAI	GTCTC	3 cut(s)	310, 1141, 1307
BsmFI	GGGAC	4 cut(s)	830, 839, 1322, 1346
BsnI	GGCC	2 cut(s)	1006, 1372
Bso31I	GGTCTC	2 cut(s)	1141, 1307
BsoBI	CYCGRG	1 cut(s)	1329
Bsp1407I	TGTACA	1 cut(s)	944
Bsp143I	GATC	5 cut(s)	124, 248, 288, 367, 1324
BspACI	CCGC	2 cut(s)	128, 1306
BspANI	GGCC	2 cut(s)	1006, 1372
BspCNI	CTCAG	2 cut(s)	303, 706
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	4 cut(s)	615, 700, 827, 1334
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	119, 1319
BspTNI	GGTCTC	2 cut(s)	1141, 1307
BsrGI	TGTACA	1 cut(s)	944
BsrI	ACTGG	3 cut(s)	554, 572, 667
BssECI	CCNNGG	3 cut(s)	691, 777, 1328
BssMI	GATC	5 cut(s)	124, 248, 288, 367, 1324
BssNAI	GTATAC	1 cut(s)	931
BssT1I	CCWWGG	2 cut(s)	691, 777
Bst1107I	GTATAC	1 cut(s)	931
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	1337
BstAUI	TGTACA	1 cut(s)	944
BstBAI	YACGTR	1 cut(s)	1023
BstC8I	GCNNGC	4 cut(s)	999, 1071, 1287, 1359
BstDEI	CTNAG	5 cut(s)	131, 311, 714, 783, 1166
BstF5I	GGATG	4 cut(s)	310, 484, 1192, 1373
BstH2I	RGCGCY	2 cut(s)	331, 915
BstHHI	GCGC	2 cut(s)	330, 914
BstKTI	GATC	5 cut(s)	127, 251, 291, 370, 1327
BstMAI	GTCTC	3 cut(s)	310, 1141, 1307
BstMBI	GATC	5 cut(s)	124, 248, 288, 367, 1324
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 878, 918, 1003, 1113, 1148, 1171
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	1361
BstSCI	CCNGG	1 cut(s)	241
BstV1I	GCAGC	3 cut(s)	489, 880, 1149
BstV2I	GAAGAC	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	931
BsuI	GTATCC	1 cut(s)	1196
BsuRI	GGCC	2 cut(s)	1006, 1372
BtsCI	GGATG	4 cut(s)	310, 484, 1192, 1373
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	4 cut(s)	999, 1071, 1287, 1359
CciI	TCATGA	1 cut(s)	838
CfoI	GCGC	2 cut(s)	330, 914
Cfr13I	GGNCC	5 cut(s)	217, 698, 826, 1004, 1333
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	3 cut(s)	12, 547, 945
CviAII	CATG	4 cut(s)	839, 1053, 1318, 1358
CviQI	GTAC	3 cut(s)	12, 547, 945
DdeI	CTNAG	5 cut(s)	131, 311, 714, 783, 1166
DpnI	GATC	5 cut(s)	126, 250, 290, 369, 1326
DpnII	GATC	5 cut(s)	124, 248, 288, 367, 1324
DraI	TTTAAA	1 cut(s)	342
Eco130I	CCWWGG	2 cut(s)	691, 777
Eco31I	GGTCTC	2 cut(s)	1141, 1307
Eco47I	GGWCC	4 cut(s)	217, 698, 826, 1333
Eco88I	CYCGRG	1 cut(s)	1329
EcoO109I	RGGNCCY	4 cut(s)	217, 698, 826, 1004
EcoRII	CCWGG	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	691, 777
EcoT22I	ATGCAT	2 cut(s)	1054, 1363
ErhI	CCWWGG	2 cut(s)	691, 777
FaeI	CATG	4 cut(s)	842, 1056, 1321, 1361
FaqI	GGGAC	4 cut(s)	830, 839, 1322, 1346
FatI	CATG	4 cut(s)	838, 1052, 1317, 1357
FauI	CCCGC	1 cut(s)	1299
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	36, 930
Fnu4HI	GCNGC	4 cut(s)	503, 894, 1163, 1391
FokI	GGATG	4 cut(s)	317, 491, 1179, 1360
Fsp4HI	GCNGC	4 cut(s)	503, 894, 1163, 1391
FspBI	CTAG	1 cut(s)	1269
GlaI	GCGC	2 cut(s)	329, 913
GluI	GCNGC	4 cut(s)	503, 894, 1163, 1391
HaeII	RGCGCY	2 cut(s)	331, 915
HaeIII	GGCC	2 cut(s)	1006, 1372
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	2 cut(s)	330, 914
Hin1II	CATG	4 cut(s)	842, 1056, 1321, 1361
Hin6I	GCGC	2 cut(s)	328, 912
HinP1I	GCGC	2 cut(s)	328, 912
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	2 cut(s)	68, 1126
HphI	GGTGA	5 cut(s)	47, 134, 377, 505, 1112
Hpy166II	GTNNAC	2 cut(s)	37, 931
Hpy188I	TCNGA	4 cut(s)	372, 715, 747, 952
Hpy188III	TCNNGA	3 cut(s)	839, 1240, 1331
Hpy8I	GTNNAC	2 cut(s)	37, 931
Hpy99I	CGWCG	1 cut(s)	1285
HpyAV	CCTTC	3 cut(s)	113, 439, 1388
HpyCH4III	ACNGT	1 cut(s)	1337
HpyCH4IV	ACGT	2 cut(s)	864, 1022
HpyCH4V	TGCA	8 cut(s)	152, 187, 383, 463, 1052, 1192, 1343, 1361
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 878, 918, 1003, 1113, 1148, 1171
HpyF3I	CTNAG	5 cut(s)	131, 311, 714, 783, 1166
HpySE526I	ACGT	2 cut(s)	864, 1022
Hsp92II	CATG	4 cut(s)	842, 1056, 1321, 1361
HspAI	GCGC	2 cut(s)	328, 912
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	124, 248, 288, 367, 1324
LmnI	GCTCC	4 cut(s)	613, 755, 878, 1222
Lsp1109I	GCAGC	3 cut(s)	489, 880, 1149
LweI	GCATC	3 cut(s)	469, 1201, 1236
MaeI	CTAG	1 cut(s)	1269
MaeII	ACGT	2 cut(s)	864, 1022
MaeIII	GTNAC	6 cut(s)	22, 390, 451, 562, 832, 1027
MalI	GATC	5 cut(s)	126, 250, 290, 369, 1326
MboI	GATC	5 cut(s)	124, 248, 288, 367, 1324
MboII	GAAGA	7 cut(s)	249, 258, 545, 995, 1216, 1255, 1286
MluCI	AATT	6 cut(s)	292, 457, 537, 608, 630, 645
MnlI	CCTC	9 cut(s)	295, 306, 346, 441, 460, 689, 721, 1186, 1338
Mph1103I	ATGCAT	2 cut(s)	1054, 1363
MseI	TTAA	8 cut(s)	104, 206, 341, 791, 857, 899, 1085, 1181
MslI	CAYNNNNRTG	2 cut(s)	63, 1197
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	7 cut(s)	91, 878, 918, 1003, 1113, 1148, 1171
NdeII	GATC	5 cut(s)	124, 248, 288, 367, 1324
NlaIII	CATG	4 cut(s)	842, 1056, 1321, 1361
NlaIV	GGNNCC	4 cut(s)	615, 700, 827, 1334
NmuCI	GTSAC	2 cut(s)	22, 451
NsiI	ATGCAT	2 cut(s)	1054, 1363
NspI	RCATGY	1 cut(s)	1361
OliI	CACNNNNGTG	1 cut(s)	63
PaeI	GCATGC	1 cut(s)	1361
PagI	TCATGA	1 cut(s)	838
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	68, 1126
PkrI	GCNGC	4 cut(s)	504, 895, 1164, 1392
Ppu21I	YACGTR	1 cut(s)	1023
PpuMI	RGGWCCY	3 cut(s)	217, 698, 826
Psp5II	RGGWCCY	3 cut(s)	217, 698, 826
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	4 cut(s)	615, 700, 827, 1334
PspPI	GGNCC	5 cut(s)	217, 698, 826, 1004, 1333
PspPPI	RGGWCCY	3 cut(s)	217, 698, 826
PsrI	GAACNNNNNNTAC	2 cut(s)	671, 703
RsaI	GTAC	3 cut(s)	13, 548, 946
RsaNI	GTAC	3 cut(s)	12, 547, 945
RseI	CAYNNNNRTG	2 cut(s)	63, 1197
SaqAI	TTAA	8 cut(s)	104, 206, 341, 791, 857, 899, 1085, 1181
SatI	GCNGC	4 cut(s)	503, 894, 1163, 1391
Sau3AI	GATC	5 cut(s)	124, 248, 288, 367, 1324
Sau96I	GGNCC	5 cut(s)	217, 698, 826, 1004, 1333
ScaI	AGTACT	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	243
SfaNI	GCATC	3 cut(s)	469, 1201, 1236
SinI	GGWCC	4 cut(s)	217, 698, 826, 1333
SmiMI	CAYNNNNRTG	2 cut(s)	63, 1197
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SphI	GCATGC	1 cut(s)	1361
Sse9I	AATT	6 cut(s)	292, 457, 537, 608, 630, 645
SsiI	CCGC	2 cut(s)	128, 1306
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	1 cut(s)	1269
StyD4I	CCNGG	1 cut(s)	241
StyI	CCWWGG	2 cut(s)	691, 777
TaaI	ACNGT	1 cut(s)	1337
TaiI	ACGT	2 cut(s)	867, 1025
TaqI	TCGA	1 cut(s)	655
TaqII	GACCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	292, 457, 537, 608, 630, 645
TatI	WGTACW	2 cut(s)	11, 944
TfiI	GAWTC	2 cut(s)	68, 1126
Tru1I	TTAA	8 cut(s)	104, 206, 341, 791, 857, 899, 1085, 1181
Tru9I	TTAA	8 cut(s)	104, 206, 341, 791, 857, 899, 1085, 1181
TseFI	GTSAC	2 cut(s)	22, 451
TseI	GCWGC	4 cut(s)	502, 893, 1162, 1390
Tsp45I	GTSAC	2 cut(s)	22, 451
TspDTI	ATGAA	3 cut(s)	458, 855, 1334
TspGWI	ACGGA	1 cut(s)	1269
VpaK11BI	GGWCC	4 cut(s)	217, 698, 826, 1333
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	1361
XmiI	GTMKAC	2 cut(s)	36, 930
XspI	CTAG	1 cut(s)	1269
ZrmI	AGTACT	1 cut(s)	13
Zsp2I	ATGCAT	2 cut(s)	1054, 1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.