RLG00000030507

glycerol-3-phosphate dehydrogenase NAD(

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
62662438 .. 62666398
3961 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030507

Sequence Viewer

Length: 1395 bp
ATGAGTGCCACCGCTGATGGAGTGAAGTACTCACCCGAGTGGTTGGTTAAGCACTCGAATGTTTCTGTTGAGGAGAAGCTTGACGAGCTTCGGCGTTTGATGGGCAAAGCCGAAGGTGATCCGTTAAGGATAGTTGGTGTAGGGGCAGGTGCTTGGGGAAGTGTTTTTGTTGCTATGTTGCAAGACACTTATGGACACTTGAGAGAGAAGGTGGTGGTGAGAATATGGAGAAGATCTGGAAGGTCTGTGGATAGAGCCACAGCTGAACATTTGTTTGAAGTGATCAATGCAAGGGAAGATGTGTTGAGGAGGCTGATTAGGCGGTGCGCTTACTTGAAGTATGTCGAGGGGAGATTAGGTGACCGGACACTTTTTGCGGATGAGATATTGAGAGACGGGTTCTGTCTGAATATGATTGATACTCCTCTTTGCCCTTTGAAGGTTGTCACCAATTTGCAGGAGGCTGTGTGGGATGCTGATATTGTGGTGAATGGGCTGCCATCAACTGAAACTCGTGTCGTGTTTGAAGAAATTAGTAGGTATTGGAGGGATAGGAAAACAATGCCAATCATAGTTTCTCTTTCAAAAGGTGTTGAAGCTGAATTGGCGCCTGAACCACGCATACTTACTCCCACTCAGATGATCCAGCGAGCAACTGGTGCTCCTGTTGAAAACATTCTCTACCTTGGAGGACCCAACATTGCCTCAGAGATATACAACAATGAATATGCTAATGCTCGGTTATGTGGAGCAGAAAAGTGGAGAAAGTCAATGGCTAAGTTTTTAAGGCAGCCACACTTCATTGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAATGTCTATGCCATTGGAGCTGGAATGGTGGCTGGGTTAACCAATGAGAGCGCCACCAGCAAATCTGTATACTTTGCACATTGTACATCAGAGATGATATTTATCACTCATTTGTTGGCAAAAGAACCAGAGAAGCTAGCAGGACCTTTATTGGCTGACACATATGTAACCCTGTTGAAAGGTCGTAATGCATGGTATGGACAAAAGCTGGCCAACGGGGAGTTAAGCCTTGAAATGGGTGATAGCATCAAGGGGAAGGGTATGATTCAGGGAGTCTCTGCTGTGAAAGCATTTTATGAGCTGCTTAGTGAGCCCTCTTTAAGTGTCAAACATCCTGAAGAAGATAAGCTCATTGCTCCTGTTCAGCTTTGTCCTATCTTGAGGATTCTATATAGTATACTTATAAAAAGGGAGTTCCCGCCTCAGGCTATTCTTGAAGCATTAAGGGATGAGACCATGCATGACCCTCGGGAGCGTATTGAGATTGCACAAACCCATGCTTTTTACAAGCCATTTCTTCTTGGTCAGCAGCAGCTCTGA

Protein Analysis

465

Amino Acids

52.09

Weight (kDa)

6.82

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 146 - 245 4.6e-11 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 274 - 423 7e-19 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1259
AarI CACCTGC 1 cut(s) 137
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 607
AccI GTMKAC 2 cut(s) 924, 1252
AciI CCGC 4 cut(s) 12, 322, 377, 1274
AclWI GGATC 2 cut(s) 113, 637
AcoI YGGCCR 1 cut(s) 1065
AcuI CTGAAG 1 cut(s) 1212
AcyI GRCGYC 1 cut(s) 608
AfaI GTAC 2 cut(s) 29, 940
AfiI CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
AjuI GAANNNNNNNTTGG 2 cut(s) 559, 591
AleI CACNNNNGTG 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 3 cut(s) 387, 1135, 1301
AlwI GGATC 2 cut(s) 113, 637
Ama87I CYCGRG 2 cut(s) 35, 1323
AoxI GGCC 1 cut(s) 1065
ApeKI GCWGC 5 cut(s) 496, 790, 1156, 1384, 1387
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 3 cut(s) 329, 610, 908
AspS9I GGNCC 2 cut(s) 692, 998
AsuHPI GGTGA 8 cut(s) 24, 128, 229, 371, 439, 499, 830, 1106
AsuNHI GCTAGC 1 cut(s) 991
AvaI CYCGRG 2 cut(s) 35, 1323
AvaII GGWCC 2 cut(s) 692, 998
AxyI CCTNAGG 1 cut(s) 1278
BalI TGGCCA 1 cut(s) 1067
BanI GGYRCC 1 cut(s) 607
BanII GRGCYC 1 cut(s) 1170
BauI CACGAG 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 3 cut(s) 483, 802, 1143
BccI CCATC 3 cut(s) 11, 94, 508
BcgI CGANNNNNNTGC 2 cut(s) 1304, 1338
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 387, 1135, 1301
BfaI CTAG 1 cut(s) 992
BfoI RGCGCY 2 cut(s) 611, 909
BfuAI ACCTGC 1 cut(s) 137
BglII AGATCT 1 cut(s) 233
BisI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
BlsI GCNGC 5 cut(s) 498, 792, 1158, 1386, 1389
BmcAI AGTACT 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 692, 998
BmeT110I CYCGRG 2 cut(s) 35, 1323
BmgT120I GGNCC 2 cut(s) 692, 998
BmiI GGNNCC 2 cut(s) 609, 694
BmsI GCATC 2 cut(s) 463, 1110
BmtI GCTAGC 1 cut(s) 995
BpuEI CTTGAG 2 cut(s) 220, 1255
BsaBI GATNNNNATC 1 cut(s) 956
BsaHI GRCGYC 1 cut(s) 608
BsaI GGTCTC 1 cut(s) 1301
BsaJI CCNNGG 2 cut(s) 685, 1322
BsaWI WCCGGW 1 cut(s) 363
BsaXI ACNNNNNCTCC 6 cut(s) 343, 373, 452, 482, 646, 676
Bsc4I CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
Bse1I ACTGG 1 cut(s) 661
Bse21I CCTNAGG 1 cut(s) 1278
Bse3DI GCAATG 2 cut(s) 699, 1206
Bse8I GATNNNNATC 1 cut(s) 956
BseDI CCNNGG 2 cut(s) 685, 1322
BseGI GGATG 4 cut(s) 385, 478, 1186, 1309
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
BseMI GCAATG 2 cut(s) 699, 1206
BseMII CTCAG 3 cut(s) 650, 720, 1292
BseNI ACTGG 1 cut(s) 661
BseRI GAGGAG 3 cut(s) 86, 322, 414
BseXI GCAGC 3 cut(s) 483, 802, 1143
BseYI CCCAGC 1 cut(s) 887
BshFI GGCC 1 cut(s) 1067
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 664
BsiHKCI CYCGRG 2 cut(s) 35, 1323
BsiSI CCGG 1 cut(s) 364
BslFI GGGAC 1 cut(s) 824
BslI CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
BsmAI GTCTC 3 cut(s) 387, 1135, 1301
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 824
BsnI GGCC 1 cut(s) 1067
Bso31I GGTCTC 1 cut(s) 1301
BsoBI CYCGRG 2 cut(s) 35, 1323
Bsp1286I GDGCHC 2 cut(s) 664, 1170
Bsp1407I TGTACA 1 cut(s) 938
Bsp143I GATC 4 cut(s) 118, 233, 282, 642
BspACI CCGC 4 cut(s) 12, 322, 377, 1274
BspANI GGCC 1 cut(s) 1067
BspCNI CTCAG 3 cut(s) 649, 719, 1291
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 2 cut(s) 609, 694
BspMI ACCTGC 1 cut(s) 137
BspOI GCTAGC 1 cut(s) 995
BspPI GGATC 2 cut(s) 113, 637
BspT107I GGYRCC 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 1301
BsrDI GCAATG 2 cut(s) 699, 1206
BsrGI TGTACA 1 cut(s) 938
BsrI ACTGG 1 cut(s) 661
BssECI CCNNGG 2 cut(s) 685, 1322
BssMI GATC 4 cut(s) 118, 233, 282, 642
BssNAI GTATAC 2 cut(s) 925, 1253
BssNI GRCGYC 1 cut(s) 608
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 685
Bst1107I GTATAC 2 cut(s) 925, 1253
Bst2BI CACGAG 1 cut(s) 513
BstACI GRCGYC 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 938
BstC8I GCNNGC 3 cut(s) 651, 993, 1065
BstDEI CTNAG 5 cut(s) 636, 706, 777, 1160, 1278
BstEII GGTNACC 2 cut(s) 359, 818
BstF5I GGATG 4 cut(s) 385, 478, 1186, 1309
BstH2I RGCGCY 2 cut(s) 611, 909
BstHHI GCGC 3 cut(s) 329, 610, 908
BstKTI GATC 4 cut(s) 121, 236, 285, 645
BstMAI GTCTC 3 cut(s) 387, 1135, 1301
BstMBI GATC 4 cut(s) 118, 233, 282, 642
BstMWI GCNNNNNNNGC 8 cut(s) 85, 319, 605, 659, 872, 912, 1142, 1165
BstPI GGTNACC 2 cut(s) 359, 818
BstV1I GCAGC 3 cut(s) 483, 802, 1143
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZ17I GTATAC 2 cut(s) 925, 1253
Bsu36I CCTNAGG 1 cut(s) 1278
BsuRI GGCC 1 cut(s) 1067
BtsCI GGATG 4 cut(s) 385, 478, 1186, 1309
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 3 cut(s) 651, 993, 1065
CciI TCATGA 1 cut(s) 832
CfoI GCGC 3 cut(s) 329, 610, 908
Cfr13I GGNCC 2 cut(s) 692, 998
Csp6I GTAC 2 cut(s) 28, 939
CviAII CATG 5 cut(s) 833, 1047, 1312, 1316, 1352
CviQI GTAC 2 cut(s) 28, 939
DdeI CTNAG 5 cut(s) 636, 706, 777, 1160, 1278
DinI GGCGCC 1 cut(s) 609
DpnI GATC 4 cut(s) 120, 235, 284, 644
DpnII GATC 4 cut(s) 118, 233, 282, 642
EaeI YGGCCR 1 cut(s) 1065
Eco130I CCWWGG 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 1170
Eco31I GGTCTC 1 cut(s) 1301
Eco47I GGWCC 2 cut(s) 692, 998
Eco57I CTGAAG 1 cut(s) 1212
Eco81I CCTNAGG 1 cut(s) 1278
Eco88I CYCGRG 2 cut(s) 35, 1323
Eco91I GGTNACC 2 cut(s) 359, 818
EcoO109I RGGNCCY 2 cut(s) 692, 998
EcoO65I GGTNACC 2 cut(s) 359, 818
EcoT14I CCWWGG 1 cut(s) 685
EcoT22I ATGCAT 2 cut(s) 1048, 1317
EcoT38I GRGCYC 1 cut(s) 1170
EgeI GGCGCC 1 cut(s) 609
EheI GGCGCC 1 cut(s) 609
ErhI CCWWGG 1 cut(s) 685
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 5 cut(s) 836, 1050, 1315, 1319, 1355
FaqI GGGAC 1 cut(s) 824
FatI CATG 5 cut(s) 832, 1046, 1311, 1315, 1351
FauI CCCGC 1 cut(s) 1281
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 282
FblI GTMKAC 2 cut(s) 924, 1252
Fnu4HI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
FokI GGATG 4 cut(s) 392, 485, 1173, 1316
FriOI GRGCYC 1 cut(s) 1170
Fsp4HI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
FspBI CTAG 1 cut(s) 992
GlaI GCGC 3 cut(s) 328, 609, 907
GluI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
GsaI CCCAGC 1 cut(s) 891
HaeII RGCGCY 2 cut(s) 611, 909
HaeIII GGCC 1 cut(s) 1067
HapII CCGG 1 cut(s) 364
HhaI GCGC 3 cut(s) 329, 610, 908
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 5 cut(s) 836, 1050, 1315, 1319, 1355
Hin6I GCGC 3 cut(s) 327, 608, 906
HinP1I GCGC 3 cut(s) 327, 608, 906
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 3 cut(s) 1120, 1128, 1240
HpaI GTTAAC 1 cut(s) 894
HpaII CCGG 1 cut(s) 364
HphI GGTGA 8 cut(s) 24, 128, 229, 371, 439, 499, 830, 1106
Hpy166II GTNNAC 3 cut(s) 894, 925, 1253
Hpy188I TCNGA 5 cut(s) 408, 639, 709, 946, 1394
Hpy188III TCNNGA 6 cut(s) 237, 833, 1190, 1234, 1289, 1325
Hpy8I GTNNAC 3 cut(s) 894, 925, 1253
HpyAV CCTTC 5 cut(s) 107, 202, 234, 433, 1105
HpyCH4V TGCA 7 cut(s) 181, 290, 457, 932, 1046, 1315, 1343
HpyF10VI GCNNNNNNNGC 8 cut(s) 85, 319, 605, 659, 872, 912, 1142, 1165
HpyF3I CTNAG 5 cut(s) 636, 706, 777, 1160, 1278
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 5 cut(s) 836, 1050, 1315, 1319, 1355
HspAI GCGC 3 cut(s) 327, 608, 906
KasI GGCGCC 1 cut(s) 607
Ksp22I TGATCA 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 894
Kzo9I GATC 4 cut(s) 118, 233, 282, 642
LmnI GCTCC 5 cut(s) 667, 749, 872, 1216, 1327
Lsp1109I GCAGC 3 cut(s) 483, 802, 1143
LweI GCATC 2 cut(s) 463, 1110
MaeI CTAG 1 cut(s) 992
MaeIII GTNAC 5 cut(s) 359, 445, 818, 826, 1021
MalI GATC 4 cut(s) 120, 235, 284, 644
MboI GATC 4 cut(s) 118, 233, 282, 642
MboII GAAGA 6 cut(s) 243, 308, 539, 1205, 1208, 1364
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 664, 1170
MlsI TGGCCA 1 cut(s) 1067
MluCI AATT 3 cut(s) 451, 531, 602
MluNI TGGCCA 1 cut(s) 1067
Mly113I GGCGCC 1 cut(s) 608
MlyI GAGTC 1 cut(s) 1137
Mox20I TGGCCA 1 cut(s) 1067
Mph1103I ATGCAT 2 cut(s) 1048, 1317
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 1 cut(s) 1067
MseI TTAA 8 cut(s) 48, 125, 785, 851, 893, 1079, 1175, 1298
MslI CAYNNNNRTG 3 cut(s) 37, 57, 638
Msp20I TGGCCA 1 cut(s) 1067
MspA1I CMGCKG 2 cut(s) 14, 263
MspI CCGG 1 cut(s) 364
MwoI GCNNNNNNNGC 8 cut(s) 85, 319, 605, 659, 872, 912, 1142, 1165
NarI GGCGCC 1 cut(s) 608
NdeI CATATG 1 cut(s) 1018
NdeII GATC 4 cut(s) 118, 233, 282, 642
NheI GCTAGC 1 cut(s) 991
NlaIII CATG 5 cut(s) 836, 1050, 1315, 1319, 1355
NlaIV GGNNCC 2 cut(s) 609, 694
NmuCI GTSAC 3 cut(s) 359, 445, 818
NsiI ATGCAT 2 cut(s) 1048, 1317
OliI CACNNNNGTG 1 cut(s) 37
PagI TCATGA 1 cut(s) 832
PaqCI CACCTGC 1 cut(s) 137
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 1120, 1240
PkrI GCNGC 5 cut(s) 498, 792, 1158, 1386, 1389
PleI GAGTC 1 cut(s) 1136
PluTI GGCGCC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 1136
PpuMI RGGWCCY 2 cut(s) 692, 998
PsiI TTATAA 1 cut(s) 1259
Psp5II RGGWCCY 2 cut(s) 692, 998
PspEI GGTNACC 2 cut(s) 359, 818
PspFI CCCAGC 1 cut(s) 887
PspN4I GGNNCC 2 cut(s) 609, 694
PspPI GGNCC 2 cut(s) 692, 998
PspPPI RGGWCCY 2 cut(s) 692, 998
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PsuI RGATCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 29, 940
RsaNI GTAC 2 cut(s) 28, 939
RseI CAYNNNNRTG 3 cut(s) 37, 57, 638
SaqAI TTAA 8 cut(s) 48, 125, 785, 851, 893, 1079, 1175, 1298
SatI GCNGC 5 cut(s) 497, 791, 1157, 1385, 1388
Sau3AI GATC 4 cut(s) 118, 233, 282, 642
Sau96I GGNCC 2 cut(s) 692, 998
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 1137
SduI GDGCHC 2 cut(s) 664, 1170
SfaNI GCATC 2 cut(s) 463, 1110
SfoI GGCGCC 1 cut(s) 609
SinI GGWCC 2 cut(s) 692, 998
SmiMI CAYNNNNRTG 3 cut(s) 37, 57, 638
SmlI CTYRAG 2 cut(s) 199, 1234
SmoI CTYRAG 2 cut(s) 199, 1234
Sse9I AATT 3 cut(s) 451, 531, 602
SsiI CCGC 4 cut(s) 12, 322, 377, 1274
SspDI GGCGCC 1 cut(s) 607
SspMI CTAG 1 cut(s) 992
StyI CCWWGG 1 cut(s) 685
TaqI TCGA 2 cut(s) 56, 345
TasI AATT 3 cut(s) 451, 531, 602
TatI WGTACW 2 cut(s) 27, 938
TfiI GAWTC 2 cut(s) 1120, 1240
Tru1I TTAA 8 cut(s) 48, 125, 785, 851, 893, 1079, 1175, 1298
Tru9I TTAA 8 cut(s) 48, 125, 785, 851, 893, 1079, 1175, 1298
TseFI GTSAC 3 cut(s) 359, 445, 818
TseI GCWGC 5 cut(s) 496, 790, 1156, 1384, 1387
Tsp45I GTSAC 3 cut(s) 359, 445, 818
TspDTI ATGAA 3 cut(s) 738, 790, 849
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 2 cut(s) 692, 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmiI GTMKAC 2 cut(s) 924, 1252
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 1 cut(s) 992
ZrmI AGTACT 1 cut(s) 29
Zsp2I ATGCAT 2 cut(s) 1048, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.