FvH4_7g02190

glycerol-3-phosphate dehydrogenase NAD(

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
2545543 .. 2549726
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02190.t1

Sequence Viewer

Length: 1416 bp
ATGGGTGCTACGGCTGAAGGAGTCAAGTACTCACCCGACTGGTTAGTCAAGCACTCAAATGTTACTGTTGAGGAGAAGCTGGACGAGCTTCGGCGTTTAATGGGCAAAGCGGAAGGTGATCCGGTCAGGATAGTTGGCGTAGGGGCTGGAGCTTGGGGGAGTGTGTTTGTTGCAATGTTGCAAGATAGTTATGGACACTTAAGGGAGAAGGCCGTGGTGAGAATATGGAGAAGATCCGGAAGGCCTGTGGATAGAGCCACAGCTGAGCATTTGTTTGAAGTCATCAATTCACGAGAAGATGTGTTGAGGAGGCTGATCAGGCGCTGTGCTTACTTGAAATATGTCGAGGCAAGATTAGGGGACCGGATACTGTTTGCGGATGAGATATTGAGAGATGGGTTCTGTCTGAATATGATTGACACTCCTCTTTGCCCTTTGAAGGTTGTCACCAATTTGCAGGAGGCTGTGTGGGATGCTGACATTGTGGTGAATGGGCTGCCATCAACTGAGACGAGTGTGGTGTTTGAGGAAATTAGTCGGTATTGGAGAGATAGGAAGACAATGCCGATCATAATTTCTCTTTCGAAAGGTGTGGAAGCTGAATTGGTGCCTGAACCGCGCATTGTTACTCCCACTCAGATGATCCAGCGAGCAACTGGTGCTCCTGTTGAAAACATTCTCTACCTTGGAGGACCCAACATTGCCTCAGAGATATACAACAACGAATACGCTAATGCTCGGTTATGTGGAGCTGAAAAGTGGACAAAGCCAATGGCCAAGTTTTTAAGGCAGCCACACTTCATTGTGTGGGACAATGGTGACCTTGTTACTCATGAAGTTATGGGTGGCTTAAAGAATGTCTATGCGATTGGAGCTGGAATGGTAGCTGGGTTAACCAATGAGAGCGCCACCAGCAAATCTGTATACTTTGCACATTGTACATCAGAGATGATATTTATCACTCATTTATTGGCAGAAGAACCAGAGAAACTTGCAGGACCTTTATTGGCTGACACGTATGTAACCTTGTTGAAAGGTCGTAATGCATGGTATGGACAAAAGCTGGCCAAGGGGGAGTTAAACCTTGAAATGGGTGACAGCATCAAGGGGAGGGGTATGATTCAGGGAGTCTCTGCTGTAAAAGCATTTTATGAGCTGCTTAGTCAGGCTTCTTTAAGTGTCAAGCATCCTGAAGAAGATAGGCGCATTGTTCCCGTTCAGCTTTGTCCTATCTTGAGGATTCTGTATAGCATACTTATAAAAAGGGAGTTCCCACCGCAGGCTATTCTTGAAGCTTTAAGGGATGAAACAATGGATGACCCTCGGGAGCGTATTGAGATTGCACAAACCCATGCTTTTTACAAGCCATTTCTTCTTGGTCAGCAGCACAGCTCTGTTAATGGAACTATCCTCTAG

Protein Analysis

472

Amino Acids

52.77

Weight (kDa)

6.41

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_Gly3P_dh_N PF01210 146 - 245 4e-10 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
NAD_Gly3P_dh_C PF07479 274 - 423 2.3e-19 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1259
AasI GACNNNNNNGTC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 607
AccI GTMKAC 1 cut(s) 924
AccII CGCG 1 cut(s) 619
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 4 cut(s) 110, 377, 617, 1277
AclWI GGATC 3 cut(s) 113, 228, 637
AcoI YGGCCR 2 cut(s) 774, 1065
AcuI CTGAAG 2 cut(s) 36, 1212
AfaI GTAC 2 cut(s) 29, 940
AfiI CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
AflII CTTAAG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 1014
AgsI TTSAA 7 cut(s) 278, 337, 439, 671, 1033, 1088, 1292
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 2 cut(s) 503, 1135
AlwI GGATC 3 cut(s) 113, 228, 637
AlwNI CAGNNNCTG 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 1323
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 4 cut(s) 210, 242, 774, 1065
ApeKI GCWGC 4 cut(s) 496, 790, 1156, 1384
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 4 cut(s) 324, 621, 908, 1206
AspS9I GGNCC 3 cut(s) 361, 692, 998
AsuHPI GGTGA 7 cut(s) 24, 128, 229, 439, 499, 830, 1106
AsuII TTCGAA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 1323
AvaII GGWCC 3 cut(s) 361, 692, 998
BalI TGGCCA 2 cut(s) 776, 1067
BanI GGYRCC 1 cut(s) 607
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 4 cut(s) 483, 802, 1143, 1396
BccI CCATC 2 cut(s) 389, 508
BceAI ACGGC 2 cut(s) 27, 197
BciVI GTATCC 1 cut(s) 360
BclI TGATCA 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 503, 1135
BfaI CTAG 1 cut(s) 1414
BfoI RGCGCY 2 cut(s) 325, 909
BfrI CTTAAG 1 cut(s) 199
BfuI GTATCC 1 cut(s) 360
BisI GCNGC 4 cut(s) 497, 791, 1157, 1385
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 4 cut(s) 498, 792, 1158, 1386
BmcAI AGTACT 1 cut(s) 29
Bme18I GGWCC 3 cut(s) 361, 692, 998
BmeT110I CYCGRG 1 cut(s) 1323
BmgT120I GGNCC 3 cut(s) 361, 692, 998
BmiI GGNNCC 3 cut(s) 362, 609, 694
BmsI GCATC 3 cut(s) 463, 1110, 1195
BpiI GAAGAC 1 cut(s) 563
BpmI CTGGAG 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 1255
BsaAI YACGTR 1 cut(s) 1017
BsaBI GATNNNNATC 1 cut(s) 956
BsaJI CCNNGG 4 cut(s) 213, 685, 1068, 1322
BsaWI WCCGGW 3 cut(s) 121, 236, 363
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 646, 676
Bsc4I CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
Bse1I ACTGG 2 cut(s) 44, 661
Bse3DI GCAATG 2 cut(s) 180, 699
Bse8I GATNNNNATC 1 cut(s) 956
BseAI TCCGGA 1 cut(s) 236
BseDI CCNNGG 4 cut(s) 213, 685, 1068, 1322
BseGI GGATG 5 cut(s) 385, 478, 1186, 1309, 1321
BseJI GATNNNNATC 1 cut(s) 956
BseLI CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
BseMI GCAATG 2 cut(s) 180, 699
BseMII CTCAG 4 cut(s) 255, 498, 650, 720
BseNI ACTGG 2 cut(s) 44, 661
BseRI GAGGAG 3 cut(s) 86, 322, 414
BseXI GCAGC 4 cut(s) 483, 802, 1143, 1396
BseYI CCCAGC 1 cut(s) 887
Bsh1236I CGCG 1 cut(s) 619
BshFI GGCC 4 cut(s) 212, 244, 776, 1067
BshNI GGYRCC 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 664
BsiHKCI CYCGRG 1 cut(s) 1323
BsiSI CCGG 3 cut(s) 122, 237, 364
BslFI GGGAC 2 cut(s) 374, 824
BslI CCNNNNNNNGG 3 cut(s) 439, 1090, 1279
BsmAI GTCTC 2 cut(s) 503, 1135
BsmBI CGTCTC 1 cut(s) 503
BsmFI GGGAC 2 cut(s) 374, 824
BsnI GGCC 4 cut(s) 212, 244, 776, 1067
BsoBI CYCGRG 1 cut(s) 1323
Bsp119I TTCGAA 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 664
Bsp13I TCCGGA 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 938
Bsp143I GATC 5 cut(s) 118, 233, 315, 567, 642
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 4 cut(s) 110, 377, 617, 1277
BspANI GGCC 4 cut(s) 212, 244, 776, 1067
BspCNI CTCAG 4 cut(s) 256, 499, 649, 719
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 1 cut(s) 619
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 362, 609, 694
BspPI GGATC 3 cut(s) 113, 228, 637
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 607
BspTI CTTAAG 1 cut(s) 199
BsrDI GCAATG 2 cut(s) 180, 699
BsrGI TGTACA 1 cut(s) 938
BsrI ACTGG 2 cut(s) 44, 661
BssECI CCNNGG 4 cut(s) 213, 685, 1068, 1322
BssMI GATC 5 cut(s) 118, 233, 315, 567, 642
BssNAI GTATAC 1 cut(s) 925
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 2 cut(s) 685, 1068
Bst1107I GTATAC 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 67, 372
BstAFI CTTAAG 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 938
BstBAI YACGTR 1 cut(s) 1017
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 651, 1065, 1281
BstDEI CTNAG 5 cut(s) 264, 507, 636, 706, 1160
BstDSI CCRYGG 1 cut(s) 213
BstEII GGTNACC 1 cut(s) 818
BstF5I GGATG 5 cut(s) 385, 478, 1186, 1309, 1321
BstFNI CGCG 1 cut(s) 619
BstH2I RGCGCY 2 cut(s) 325, 909
BstHHI GCGC 4 cut(s) 324, 621, 908, 1206
BstKTI GATC 5 cut(s) 121, 236, 318, 570, 645
BstMAI GTCTC 2 cut(s) 503, 1135
BstMBI GATC 5 cut(s) 118, 233, 315, 567, 642
BstMWI GCNNNNNNNGC 7 cut(s) 85, 319, 616, 659, 872, 912, 1142
BstPI GGTNACC 1 cut(s) 818
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 4 cut(s) 483, 802, 1143, 1396
BstV2I GAAGAC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BstZ17I GTATAC 1 cut(s) 925
BsuI GTATCC 1 cut(s) 360
BsuRI GGCC 4 cut(s) 212, 244, 776, 1067
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 5 cut(s) 385, 478, 1186, 1309, 1321
Cac8I GCNNGC 3 cut(s) 651, 1065, 1281
CaiI CAGNNNCTG 1 cut(s) 324
CciI TCATGA 1 cut(s) 832
CfoI GCGC 4 cut(s) 324, 621, 908, 1206
Cfr13I GGNCC 3 cut(s) 361, 692, 998
Csp6I GTAC 2 cut(s) 28, 939
CviAII CATG 3 cut(s) 833, 1047, 1352
CviQI GTAC 2 cut(s) 28, 939
DdeI CTNAG 5 cut(s) 264, 507, 636, 706, 1160
DpnI GATC 5 cut(s) 120, 235, 317, 569, 644
DpnII GATC 5 cut(s) 118, 233, 315, 567, 642
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 2 cut(s) 774, 1065
Eco130I CCWWGG 2 cut(s) 685, 1068
Eco147I AGGCCT 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 361, 692, 998
Eco57I CTGAAG 2 cut(s) 36, 1212
Eco88I CYCGRG 1 cut(s) 1323
Eco91I GGTNACC 1 cut(s) 818
EcoO109I RGGNCCY 2 cut(s) 692, 998
EcoO65I GGTNACC 1 cut(s) 818
EcoT14I CCWWGG 2 cut(s) 685, 1068
EcoT22I ATGCAT 1 cut(s) 1048
ErhI CCWWGG 2 cut(s) 685, 1068
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 3 cut(s) 836, 1050, 1355
FaqI GGGAC 2 cut(s) 374, 824
FatI CATG 3 cut(s) 832, 1046, 1351
FbaI TGATCA 1 cut(s) 315
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 4 cut(s) 497, 791, 1157, 1385
FokI GGATG 5 cut(s) 392, 485, 1173, 1316, 1328
Fsp4HI GCNGC 4 cut(s) 497, 791, 1157, 1385
FspBI CTAG 1 cut(s) 1414
GlaI GCGC 4 cut(s) 323, 620, 907, 1205
GluI GCNGC 4 cut(s) 497, 791, 1157, 1385
GsaI CCCAGC 1 cut(s) 891
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 2 cut(s) 325, 909
HaeIII GGCC 4 cut(s) 212, 244, 776, 1067
HapII CCGG 3 cut(s) 122, 237, 364
HhaI GCGC 4 cut(s) 324, 621, 908, 1206
Hin1II CATG 3 cut(s) 836, 1050, 1355
Hin6I GCGC 4 cut(s) 322, 619, 906, 1204
HinP1I GCGC 4 cut(s) 322, 619, 906, 1204
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HindIII AAGCTT 1 cut(s) 1293
HinfI GANTC 4 cut(s) 21, 1120, 1128, 1240
HpaI GTTAAC 1 cut(s) 894
HpaII CCGG 3 cut(s) 122, 237, 364
HphI GGTGA 7 cut(s) 24, 128, 229, 439, 499, 830, 1106
Hpy166II GTNNAC 3 cut(s) 762, 894, 925
Hpy188I TCNGA 4 cut(s) 408, 639, 709, 946
Hpy188III TCNNGA 8 cut(s) 127, 237, 291, 833, 1190, 1234, 1289, 1325
Hpy8I GTNNAC 3 cut(s) 762, 894, 925
HpyAV CCTTC 5 cut(s) 11, 107, 202, 234, 433
HpyCH4III ACNGT 2 cut(s) 67, 372
HpyCH4IV ACGT 1 cut(s) 1016
HpyCH4V TGCA 7 cut(s) 173, 181, 457, 932, 995, 1046, 1343
HpyF10VI GCNNNNNNNGC 7 cut(s) 85, 319, 616, 659, 872, 912, 1142
HpyF3I CTNAG 5 cut(s) 264, 507, 636, 706, 1160
HpySE526I ACGT 1 cut(s) 1016
Hsp92II CATG 3 cut(s) 836, 1050, 1355
HspAI GCGC 4 cut(s) 322, 619, 906, 1204
Kpn2I TCCGGA 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 315
KspAI GTTAAC 1 cut(s) 894
Kzo9I GATC 5 cut(s) 118, 233, 315, 567, 642
LmnI GCTCC 5 cut(s) 149, 667, 749, 872, 1327
Lsp1109I GCAGC 4 cut(s) 483, 802, 1143, 1396
LweI GCATC 3 cut(s) 463, 1110, 1195
MaeI CTAG 1 cut(s) 1414
MaeII ACGT 1 cut(s) 1016
MaeIII GTNAC 7 cut(s) 61, 445, 625, 818, 826, 1021, 1094
MalI GATC 5 cut(s) 120, 235, 317, 569, 644
MboI GATC 5 cut(s) 118, 233, 315, 567, 642
MboII GAAGA 7 cut(s) 243, 308, 568, 989, 1205, 1208, 1364
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 664
MlsI TGGCCA 2 cut(s) 776, 1067
MluCI AATT 5 cut(s) 286, 451, 531, 573, 602
MluNI TGGCCA 2 cut(s) 776, 1067
MlyI GAGTC 2 cut(s) 30, 1137
Mox20I TGGCCA 2 cut(s) 776, 1067
Mph1103I ATGCAT 1 cut(s) 1048
MroI TCCGGA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 2 cut(s) 776, 1067
MseI TTAA 9 cut(s) 98, 200, 785, 851, 893, 1079, 1175, 1298, 1398
MslI CAYNNNNRTG 3 cut(s) 57, 485, 638
Msp20I TGGCCA 2 cut(s) 776, 1067
MspA1I CMGCKG 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 3 cut(s) 122, 237, 364
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 7 cut(s) 85, 319, 616, 659, 872, 912, 1142
NdeII GATC 5 cut(s) 118, 233, 315, 567, 642
NlaIII CATG 3 cut(s) 836, 1050, 1355
NlaIV GGNNCC 3 cut(s) 362, 609, 694
NmuCI GTSAC 3 cut(s) 445, 818, 1094
NsiI ATGCAT 1 cut(s) 1048
NspV TTCGAA 1 cut(s) 584
PagI TCATGA 1 cut(s) 832
PceI AGGCCT 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 1120, 1240
PkrI GCNGC 4 cut(s) 498, 792, 1158, 1386
PleI GAGTC 2 cut(s) 29, 1136
PpsI GAGTC 2 cut(s) 29, 1136
Ppu21I YACGTR 1 cut(s) 1017
PpuMI RGGWCCY 2 cut(s) 692, 998
PsiI TTATAA 1 cut(s) 1259
Psp5II RGGWCCY 2 cut(s) 692, 998
PspEI GGTNACC 1 cut(s) 818
PspFI CCCAGC 1 cut(s) 887
PspN4I GGNNCC 3 cut(s) 362, 609, 694
PspPI GGNCC 3 cut(s) 361, 692, 998
PspPPI RGGWCCY 2 cut(s) 692, 998
PstNI CAGNNNCTG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 2 cut(s) 29, 940
RsaNI GTAC 2 cut(s) 28, 939
RseI CAYNNNNRTG 3 cut(s) 57, 485, 638
SaqAI TTAA 9 cut(s) 98, 200, 785, 851, 893, 1079, 1175, 1298, 1398
SatI GCNGC 4 cut(s) 497, 791, 1157, 1385
Sau3AI GATC 5 cut(s) 118, 233, 315, 567, 642
Sau96I GGNCC 3 cut(s) 361, 692, 998
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 2 cut(s) 30, 1137
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 3 cut(s) 463, 1110, 1195
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 3 cut(s) 361, 692, 998
SmiMI CAYNNNNRTG 3 cut(s) 57, 485, 638
SmlI CTYRAG 2 cut(s) 199, 1234
SmoI CTYRAG 2 cut(s) 199, 1234
Sse9I AATT 5 cut(s) 286, 451, 531, 573, 602
SseBI AGGCCT 1 cut(s) 244
SsiI CCGC 4 cut(s) 110, 377, 617, 1277
SspMI CTAG 1 cut(s) 1414
StuI AGGCCT 1 cut(s) 244
StyI CCWWGG 2 cut(s) 685, 1068
TaaI ACNGT 2 cut(s) 67, 372
TaiI ACGT 1 cut(s) 1019
TaqI TCGA 2 cut(s) 345, 584
TasI AATT 5 cut(s) 286, 451, 531, 573, 602
TatI WGTACW 2 cut(s) 27, 938
TfiI GAWTC 2 cut(s) 1120, 1240
Tru1I TTAA 9 cut(s) 98, 200, 785, 851, 893, 1079, 1175, 1298, 1398
Tru9I TTAA 9 cut(s) 98, 200, 785, 851, 893, 1079, 1175, 1298, 1398
TseFI GTSAC 3 cut(s) 445, 818, 1094
TseI GCWGC 4 cut(s) 496, 790, 1156, 1384
Tsp45I GTSAC 3 cut(s) 445, 818, 1094
TspDTI ATGAA 3 cut(s) 790, 849, 1320
Vha464I CTTAAG 1 cut(s) 199
VpaK11BI GGWCC 3 cut(s) 361, 692, 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmiI GTMKAC 1 cut(s) 924
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 1 cut(s) 1414
ZrmI AGTACT 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.