Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Forward (+)

2528997 .. 2531573

Gene Structure 2577 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCTCTCGGCCAAGAAAATGTTGATCCTGTTGAAGTTTCAGGGTCGCATGCTTGCTTATATGAACTTTTATGTTCTGAGACACCCAAATGGACTCCTCTTAGGGTTGAAGATTTGCAAACATCTTCTTCTGATCCCAGAGATCGGTTGGAGAAGTTGCTGAAGCAACCTGGGAATAAATATTGTGCTGACTGTGGCTCTCCTGAACCAAAATGGGTATCGTTGAGTCTTGGTGTATTTATCTGCATTAAGTGTTCTGGTGTACACAGAAGTCTTGGAGTTCATATATCAAAGGTTCTATCAGTAAAGCTAGACGAGTGGACAGATGATCAGGTTGACATGCTTGTAGGTTACGGTGGAAACACGGCAGTGAACGAAAGATTCGAAGCTTGCAACATCGACCAGTCAAAGAAACCAAAACCAGATTCTACTAATGAGGAACGAAATGATTTCATTAGAAAAAAATATGAGCAGCACCAGTTTATGGATCCAAAGGATGGTGCTTTGTGCACTTATCAGCAGCCTAGCAGAACAAACACTTCACCACCGTCTTTATGTTCTGCAAGCCACCGTTCTACAAAAAACCGTATTGGTCATGCATTTAGGAATAGCTGGGGAAGAAGAGAATCTGATCACAAAGGACCAAAGAAGAGCAATTCCATGGCAGGTATGGTTGAGTTTGTGGGGTTGATTAAGGTTAACGTGGTAAAAGGAACCAACCTTGCGGTTCGAGACGTGATGACCAGCGATCCTTATGTTATCCTTGCTCTTGGCCAACAATCGGTAAAAACACGGGTGATAAAGAACAACTTGAATCCTGTGTGGAATGAGACGCTAATGCTTTCGATACCCGAGCCCATGCCTCCTCTCAAAGTGCTAGTGTACGACAAGGATACATTCTCGACAGATGATTTCATGGGAGAGGCAGAGATAGACATACAACCATTGGTGAGTGCAGCAAAAGCATACGAGACATCGAGCATAAAGGAACCGATGCAGCTGGGAAGTTGGGTGGCGAGCAAAGAGAACACATTGGTGAGTGATGGCATAATCTTACTTGAAGACGGGAAAGTGAAACAAGACATTTCACTTAGGCTACAAAATGTTGAAAGAGGTGTTCTTGAGATCCAGCTTGAATGTCTTCCTCTCACTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

385

Amino Acids

42.91

Weight (kDa)

5.9

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	49 - 164	4.6e-41	Putative GTPase activating protein for Arf
C2	PF00168	230 - 320	2.5e-25	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
AccB7I	CCANNNNNTGG	2 cut(s)	484, 497
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	6 cut(s)	20, 128, 482, 495, 743, 1120
AcoI	YGGCCR	2 cut(s)	10, 772
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	2 cut(s)	264, 884
AfiI	CCNNNNNNNGG	4 cut(s)	144, 484, 497, 781
AgsI	TTSAA	6 cut(s)	35, 110, 814, 1061, 1109, 1136
AjiI	CACGTC	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	409, 441
AleI	CACNNNNGTG	2 cut(s)	368, 1034
AluBI	AGCT	5 cut(s)	310, 389, 612, 1000, 1132
AluI	AGCT	5 cut(s)	310, 389, 612, 1000, 1132
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	5 cut(s)	9, 74, 726, 824, 965
Alw44I	GTGCAC	1 cut(s)	508
AlwI	GGATC	6 cut(s)	20, 128, 482, 495, 743, 1120
Ama87I	CYCGRG	1 cut(s)	851
AoxI	GGCC	2 cut(s)	10, 772
ApaLI	GTGCAC	1 cut(s)	508
ApeKI	GCWGC	4 cut(s)	472, 520, 956, 997
Asp700I	GAANNNNTTC	1 cut(s)	1140
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	4 cut(s)	534, 808, 961, 1048
AsuII	TTCGAA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	851
AvaII	GGWCC	1 cut(s)	641
BaeGI	GKGCMC	1 cut(s)	512
BalI	TGGCCA	1 cut(s)	774
BamHI	GGATCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	858
BbsI	GAAGAC	2 cut(s)	1068, 1133
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	4 cut(s)	484, 532, 968, 1009
BccI	CCATC	2 cut(s)	491, 1037
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	886
BclI	TGATCA	2 cut(s)	328, 631
BcoDI	GTCTC	5 cut(s)	9, 74, 726, 824, 965
BfaI	CTAG	3 cut(s)	311, 525, 878
BfuAI	ACCTGC	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	886
BisI	GCNGC	4 cut(s)	473, 521, 957, 998
BlsI	GCNGC	4 cut(s)	474, 522, 958, 999
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	3 cut(s)	489, 715, 990
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	984
BpiI	GAAGAC	2 cut(s)	1068, 1133
Bpu14I	TTCGAA	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	1142
BsaJI	CCNNGG	2 cut(s)	170, 660
Bsc4I	CCNNNNNNNGG	4 cut(s)	144, 484, 497, 781
Bse1I	ACTGG	2 cut(s)	403, 478
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	170, 660
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	4 cut(s)	144, 484, 497, 781
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	403, 478
BseRI	GAGGAG	2 cut(s)	87, 855
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	4 cut(s)	484, 532, 968, 1009
BseYI	CCCAGC	2 cut(s)	612, 1000
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	2 cut(s)	12, 774
BsiHKAI	GWGCWC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	851
BslI	CCNNNNNNNGG	4 cut(s)	144, 484, 497, 781
BsmAI	GTCTC	5 cut(s)	9, 74, 726, 824, 965
BsmBI	CGTCTC	2 cut(s)	726, 824
BsnI	GGCC	2 cut(s)	12, 774
BsoBI	CYCGRG	1 cut(s)	851
Bsp119I	TTCGAA	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	512, 858
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
Bsp19I	CCATGG	1 cut(s)	660
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	2 cut(s)	12, 774
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	489, 715, 990
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	6 cut(s)	20, 128, 482, 495, 743, 1120
BspQI	GCTCTTC	1 cut(s)	644
BspT104I	TTCGAA	1 cut(s)	384
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	403, 478
BssECI	CCNNGG	2 cut(s)	170, 660
BssMI	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	5 cut(s)	194, 356, 549, 572, 587
Bst6I	CTCTTC	2 cut(s)	616, 644
BstAUI	TGTACA	1 cut(s)	262
BstBI	TTCGAA	1 cut(s)	384
BstC8I	GCNNGC	5 cut(s)	51, 55, 391, 565, 1018
BstDEI	CTNAG	3 cut(s)	78, 101, 1091
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	8 cut(s)	28, 136, 145, 331, 490, 634, 751, 1128
BstMAI	GTCTC	5 cut(s)	9, 74, 726, 824, 965
BstMBI	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
BstMWI	GCNNNNNNNGC	1 cut(s)	962
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	2 cut(s)	53, 343
BstSCI	CCNGG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	4 cut(s)	484, 532, 968, 1009
BstV2I	GAAGAC	2 cut(s)	1068, 1133
BstX2I	RGATCY	2 cut(s)	487, 1125
BstYI	RGATCY	2 cut(s)	487, 1125
BsuI	GTATCC	1 cut(s)	886
BsuRI	GGCC	2 cut(s)	12, 774
BtgI	CCRYGG	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	736
BtsCI	GGATG	1 cut(s)	502
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	5 cut(s)	51, 55, 391, 565, 1018
Cfr13I	GGNCC	1 cut(s)	641
CseI	GACGC	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	263, 883
CviAII	CATG	6 cut(s)	50, 340, 596, 661, 859, 916
CviQI	GTAC	2 cut(s)	263, 883
DdeI	CTNAG	3 cut(s)	78, 101, 1091
DpnI	GATC	8 cut(s)	27, 135, 144, 330, 489, 633, 750, 1127
DpnII	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
EaeI	YGGCCR	2 cut(s)	10, 772
Eam1104I	CTCTTC	2 cut(s)	616, 644
EarI	CTCTTC	2 cut(s)	616, 644
Eco130I	CCWWGG	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	858
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	858
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	2 cut(s)	726, 824
FaeI	CATG	6 cut(s)	53, 343, 599, 664, 862, 919
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FatI	CATG	6 cut(s)	49, 339, 595, 660, 858, 915
FbaI	TGATCA	2 cut(s)	328, 631
Fnu4HI	GCNGC	4 cut(s)	473, 521, 957, 998
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	4 cut(s)	473, 521, 957, 998
FspBI	CTAG	3 cut(s)	311, 525, 878
GluI	GCNGC	4 cut(s)	473, 521, 957, 998
GsaI	CCCAGC	2 cut(s)	616, 1004
HaeIII	GGCC	2 cut(s)	12, 774
HgaI	GACGC	1 cut(s)	841
Hin1II	CATG	6 cut(s)	53, 343, 599, 664, 862, 919
HincII	GTYRAC	2 cut(s)	337, 700
HindII	GTYRAC	2 cut(s)	337, 700
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	6 cut(s)	94, 226, 381, 425, 626, 814
HpaI	GTTAAC	1 cut(s)	700
HphI	GGTGA	4 cut(s)	534, 808, 961, 1048
Hpy166II	GTNNAC	8 cut(s)	263, 265, 321, 337, 373, 510, 700, 883
Hpy188I	TCNGA	3 cut(s)	79, 133, 631
Hpy188III	TCNNGA	4 cut(s)	203, 731, 901, 1121
Hpy8I	GTNNAC	8 cut(s)	263, 265, 321, 337, 373, 510, 700, 883
HpyCH4III	ACNGT	5 cut(s)	194, 356, 549, 572, 587
HpyCH4IV	ACGT	2 cut(s)	702, 735
HpyCH4V	TGCA	8 cut(s)	118, 246, 393, 510, 563, 599, 956, 997
HpyF10VI	GCNNNNNNNGC	1 cut(s)	962
HpyF3I	CTNAG	3 cut(s)	78, 101, 1091
HpySE526I	ACGT	2 cut(s)	702, 735
Hsp92II	CATG	6 cut(s)	53, 343, 599, 664, 862, 919
Ksp22I	TGATCA	2 cut(s)	328, 631
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
LguI	GCTCTTC	1 cut(s)	644
Lsp1109I	GCAGC	4 cut(s)	484, 532, 968, 1009
LweI	GCATC	1 cut(s)	984
MaeI	CTAG	3 cut(s)	311, 525, 878
MaeII	ACGT	2 cut(s)	702, 735
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	8 cut(s)	27, 135, 144, 330, 489, 633, 750, 1127
MboI	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
MboII	GAAGA	8 cut(s)	117, 120, 122, 630, 633, 661, 1073, 1133
MflI	RGATCY	2 cut(s)	487, 1125
MhlI	GDGCHC	2 cut(s)	512, 858
MlsI	TGGCCA	1 cut(s)	774
MluCI	AATT	1 cut(s)	655
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	2 cut(s)	88, 235
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	7 cut(s)	108, 430, 873, 876, 916, 1106, 1155
Mox20I	TGGCCA	1 cut(s)	774
Mph1103I	ATGCAT	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	1140
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	3 cut(s)	249, 693, 699
MslI	CAYNNNNRTG	3 cut(s)	88, 368, 1034
Msp20I	TGGCCA	1 cut(s)	774
MspA1I	CMGCKG	1 cut(s)	1000
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	962
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
NlaIII	CATG	6 cut(s)	53, 343, 599, 664, 862, 919
NlaIV	GGNNCC	3 cut(s)	489, 715, 990
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	2 cut(s)	53, 343
NspV	TTCGAA	1 cut(s)	384
OliI	CACNNNNGTG	2 cut(s)	368, 1034
PaeI	GCATGC	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	1140
PfeI	GAWTC	4 cut(s)	381, 425, 626, 814
PflMI	CCANNNNNTGG	2 cut(s)	484, 497
PkrI	GCNGC	4 cut(s)	474, 522, 958, 999
PleI	GAGTC	2 cut(s)	88, 234
PpsI	GAGTC	2 cut(s)	88, 234
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	2 cut(s)	612, 1000
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	489, 715, 990
PspPI	GGNCC	1 cut(s)	641
PsuI	RGATCY	2 cut(s)	487, 1125
PvuII	CAGCTG	1 cut(s)	1000
RsaI	GTAC	2 cut(s)	264, 884
RsaNI	GTAC	2 cut(s)	263, 883
RseI	CAYNNNNRTG	3 cut(s)	88, 368, 1034
SapI	GCTCTTC	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	249, 693, 699
SatI	GCNGC	4 cut(s)	473, 521, 957, 998
Sau3AI	GATC	8 cut(s)	25, 133, 142, 328, 487, 631, 748, 1125
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	2 cut(s)	88, 235
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	2 cut(s)	512, 858
SfaNI	GCATC	1 cut(s)	984
SfuI	TTCGAA	1 cut(s)	384
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	3 cut(s)	88, 368, 1034
SmlI	CTYRAG	1 cut(s)	1121
SmoI	CTYRAG	1 cut(s)	1121
SphI	GCATGC	1 cut(s)	53
Sse9I	AATT	1 cut(s)	655
SsiI	CCGC	1 cut(s)	725
SspI	AATATT	1 cut(s)	182
SspMI	CTAG	3 cut(s)	311, 525, 878
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	5 cut(s)	194, 356, 549, 572, 587
TaiI	ACGT	2 cut(s)	705, 738
TaqI	TCGA	6 cut(s)	384, 399, 730, 845, 902, 977
TasI	AATT	1 cut(s)	655
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	4 cut(s)	381, 425, 626, 814
Tru1I	TTAA	3 cut(s)	249, 693, 699
Tru9I	TTAA	3 cut(s)	249, 693, 699
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	4 cut(s)	472, 520, 956, 997
TspDTI	ATGAA	4 cut(s)	78, 272, 442, 904
TspRI	CASTG	1 cut(s)	375
Van91I	CCANNNNNTGG	2 cut(s)	484, 497
VneI	GTGCAC	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	641
XceI	RCATGY	2 cut(s)	53, 343
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 667
XmnI	GAANNNNTTC	1 cut(s)	1140
XspI	CTAG	3 cut(s)	311, 525, 878
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.