FvH4_7g02820

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004089
Physical Location & Seq
Forward (+)
3139832 .. 3146894
7063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02820.t8

Sequence Viewer

Length: 1185 bp
ATGGAGATGGCTACCCAGCAAGAAAATTCTGGTCACAACAATGTTTCCGAACAAGGGTCTTGCCTATATGATCTCTTATGTTCAGATGCACCCAATTGGAGAACCCAAAGTGATCGACGGACATTATCCGGTCCACAAGAAAGGCTGGAGATTTTGCTGCATCAATCTGCCAACAAGTCCTGTGCTGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTAAATTTTGGAGTATTTATTTGCATCAAGTGTTCTGGTGTACATAGAAGCCTTGGAGTGCATATTTCAAAGGTTGTTTCAGTGAAGCTAGATGAATGGACAAATGAAGAAGTTGATGGCCTGGCAAGTATGGGTGGAAATGTTACTATAAACAAGAAGTTTGAAGCTTGCATGCCAGTACATGTTCAAAAACCAAAACCAGATTCTTCTATAGAGGAGCGCTTCTATTTTATTAGGAGAAAATATGAGCTGCAAGACTTTTTGAATACAAGTGATGAGATGTCATGTCCTTTTCCCCCTGCTCATAAGAGACATTCTTCGACCAATTCTTCAAGCAGTAGTTATAGCCAAGACAAGAAACAATGTGACAAGCAACCTACCAGACATCGTATCGGGCATGCATTTCGTAATAGCTGGGGAAGAAAAGACTCTGATCATAGAGCCGCAAAGAAGGGCAACTCAATGTCAATGGCAGGTATGGTTGAATTTGTTGGATTAATTAAAGTGAACGTGGTCAGAGGAACGAACTTAGTTGTCCGGGATGTGGTCACAAGTGATCCTTATGTTATCCTTGCATTGGGTCACCAATCAGTGAAGACACGCGTTATAAAGAACAACCTGAATCCAGTGTGGAATGAAAGCCTGATGCTGTCAATTCCTGAACAGATTCCTCCTCTGAAAGTGCTGGTGTATGACAAGGATACATTCACAACTGATGATTATATGGGTGAGGCTGAGATTGACATTCAACCTCTGGTCACCGCTGCTGTAGCCTTTGAGAAGTCTTCGATCAATGAAACGACGCAGCTGGGTAAGTGGATAGCCAGCAAAGATAACACCCTGGTAAAAGATGGTGTCATCAGCCTAATAGATGGGAAAGTAAGACAGCAGATTGCTCTTAGGCTGCAGAATGTTGAGAGAGGTATGTTAGAGATTGAGCTGGAATGTGTTCCTCTTACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap C2

Protein Analysis

395

Amino Acids

44.12

Weight (kDa)

6.83

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 47 - 162 5.6e-37 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 683
AccII CGCG 1 cut(s) 822
AciI CCGC 2 cut(s) 663, 981
AclWI GGATC 3 cut(s) 197, 202, 770
AcsI RAATTY 3 cut(s) 25, 223, 704
AfaI GTAC 2 cut(s) 261, 399
AfeI AGCGCT 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 54, 763, 796
AflIII ACRYGT 2 cut(s) 400, 820
AgsI TTSAA 7 cut(s) 288, 383, 407, 484, 552, 704, 968
AjnI CCWGG 2 cut(s) 339, 1059
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 6 cut(s) 307, 386, 469, 633, 1027, 1159
AluI AGCT 6 cut(s) 307, 386, 469, 633, 1027, 1159
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 3 cut(s) 197, 202, 770
Aor51HI AGCGCT 1 cut(s) 440
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 5 cut(s) 157, 469, 983, 1024, 1123
ApoI RAATTY 3 cut(s) 25, 223, 704
AseI ATTAAT 1 cut(s) 716
Asp700I GAANNNNTTC 2 cut(s) 885, 1167
AspLEI GCGC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 3 cut(s) 794, 959, 970
AvaII GGWCC 1 cut(s) 131
BbsI GAAGAC 2 cut(s) 821, 996
BbvI GCAGC 5 cut(s) 144, 456, 970, 1036, 1110
BccI CCATC 3 cut(s) 329, 1064, 1085
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 2 cut(s) 341, 1061
BciVI GTATCC 1 cut(s) 913
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 1 cut(s) 758
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 3 cut(s) 429, 987, 1124
BfoI RGCGCY 1 cut(s) 442
BfuAI ACCTGC 1 cut(s) 683
BfuI GTATCC 1 cut(s) 913
BisI GCNGC 6 cut(s) 158, 470, 663, 984, 1025, 1124
BlsI GCNGC 6 cut(s) 159, 471, 664, 985, 1026, 1125
Bme1390I CCNGG 3 cut(s) 341, 758, 1061
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 3 cut(s) 341, 758, 1061
BmsI GCATC 4 cut(s) 76, 169, 252, 855
BpiI GAAGAC 2 cut(s) 821, 996
BpmI CTGGAG 2 cut(s) 167, 183
BpuMI CCSGG 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 271, 1059
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 763, 796
Bse1I ACTGG 2 cut(s) 395, 845
BseBI CCWGG 2 cut(s) 341, 1061
BseDI CCNNGG 2 cut(s) 271, 1059
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 3 cut(s) 54, 763, 796
BseMII CTCAG 1 cut(s) 945
BseNI ACTGG 2 cut(s) 395, 845
BseRI GAGGAG 2 cut(s) 449, 882
BseXI GCAGC 5 cut(s) 144, 456, 970, 1036, 1110
BseYI CCCAGC 3 cut(s) 15, 633, 1027
Bsh1236I CGCG 1 cut(s) 822
BshFI GGCC 1 cut(s) 339
BsiSI CCGG 2 cut(s) 129, 757
BslI CCNNNNNNNGG 3 cut(s) 54, 763, 796
BsmAI GTCTC 1 cut(s) 523
BsnI GGCC 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 259
Bsp143I GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
BspACI CCGC 2 cut(s) 663, 981
BspANI GGCC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 946
BspFNI CGCG 1 cut(s) 822
BspMAI CTGCAG 1 cut(s) 1128
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 197, 202, 770
BsrGI TGTACA 1 cut(s) 259
BsrI ACTGG 2 cut(s) 395, 845
BssECI CCNNGG 2 cut(s) 271, 1059
BssMI GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
BssT1I CCWWGG 1 cut(s) 271
Bst2UI CCWGG 2 cut(s) 341, 1061
BstAUI TGTACA 1 cut(s) 259
BstC8I GCNNGC 4 cut(s) 388, 392, 618, 1045
BstDEI CTNAG 3 cut(s) 748, 954, 1118
BstEII GGTNACC 2 cut(s) 800, 976
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 1 cut(s) 822
BstH2I RGCGCY 1 cut(s) 442
BstHHI GCGC 1 cut(s) 441
BstKTI GATC 7 cut(s) 73, 115, 197, 205, 655, 778, 1011
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
BstMWI GCNNNNNNNGC 1 cut(s) 989
BstNI CCWGG 2 cut(s) 341, 1061
BstNSI RCATGY 3 cut(s) 394, 404, 620
BstPI GGTNACC 2 cut(s) 800, 976
BstSCI CCNGG 3 cut(s) 339, 756, 1059
BstSFI CTRYAG 3 cut(s) 429, 987, 1124
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 5 cut(s) 144, 456, 970, 1036, 1110
BstV2I GAAGAC 2 cut(s) 821, 996
BstX2I RGATCY 2 cut(s) 194, 202
BstYI RGATCY 2 cut(s) 194, 202
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 1 cut(s) 339
BtsCI GGATG 1 cut(s) 766
BtsIMutI CAGTG 3 cut(s) 306, 816, 852
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 4 cut(s) 388, 392, 618, 1045
CfoI GCGC 1 cut(s) 441
Cfr13I GGNCC 1 cut(s) 131
CseI GACGC 1 cut(s) 1030
Csp6I GTAC 2 cut(s) 260, 398
CviAII CATG 4 cut(s) 391, 401, 504, 617
CviQI GTAC 2 cut(s) 260, 398
DdeI CTNAG 3 cut(s) 748, 954, 1118
DpnI GATC 7 cut(s) 72, 114, 196, 204, 654, 777, 1010
DpnII GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
DraI TTTAAA 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 131
Eco47III AGCGCT 1 cut(s) 440
Eco91I GGTNACC 2 cut(s) 800, 976
EcoO65I GGTNACC 2 cut(s) 800, 976
EcoRII CCWGG 2 cut(s) 339, 1059
EcoT14I CCWWGG 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 271
FaeI CATG 4 cut(s) 394, 404, 507, 620
FalI AAGNNNNNCTT 2 cut(s) 763, 795
FatI CATG 4 cut(s) 390, 400, 503, 616
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 6 cut(s) 158, 470, 663, 984, 1025, 1124
FokI GGATG 1 cut(s) 773
Fsp4HI GCNGC 6 cut(s) 158, 470, 663, 984, 1025, 1124
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 440
GluI GCNGC 6 cut(s) 158, 470, 663, 984, 1025, 1124
GsaI CCCAGC 3 cut(s) 19, 637, 1031
GsuI CTGGAG 2 cut(s) 167, 183
HaeII RGCGCY 1 cut(s) 442
HaeIII GGCC 1 cut(s) 339
HapII CCGG 2 cut(s) 129, 757
HgaI GACGC 1 cut(s) 1030
HhaI GCGC 1 cut(s) 441
Hin1II CATG 4 cut(s) 394, 404, 507, 620
Hin6I GCGC 1 cut(s) 439
HinP1I GCGC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 4 cut(s) 422, 647, 841, 886
HpaII CCGG 2 cut(s) 129, 757
HphI GGTGA 3 cut(s) 794, 959, 970
Hpy166II GTNNAC 3 cut(s) 134, 260, 727
Hpy188I TCNGA 5 cut(s) 49, 85, 652, 737, 897
Hpy188III TCNNGA 2 cut(s) 200, 878
Hpy8I GTNNAC 3 cut(s) 134, 260, 727
Hpy99I CGWCG 2 cut(s) 120, 1024
HpyAV CCTTC 1 cut(s) 664
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 9 cut(s) 89, 160, 243, 280, 390, 472, 620, 794, 1126
HpyF10VI GCNNNNNNNGC 1 cut(s) 989
HpyF3I CTNAG 3 cut(s) 748, 954, 1118
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 4 cut(s) 394, 404, 507, 620
HspAI GCGC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 5 cut(s) 144, 456, 970, 1036, 1110
LweI GCATC 4 cut(s) 76, 169, 252, 855
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 6 cut(s) 32, 361, 584, 766, 800, 976
MalI GATC 7 cut(s) 72, 114, 196, 204, 654, 777, 1010
MboI GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
MboII GAAGA 7 cut(s) 338, 417, 528, 540, 651, 826, 996
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 2 cut(s) 194, 202
MluCI AATT 7 cut(s) 25, 94, 223, 544, 704, 717, 873
MluI ACGCGT 1 cut(s) 820
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 691
MnlI CCTC 8 cut(s) 427, 731, 900, 903, 943, 981, 1133, 1182
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 2 cut(s) 885, 1167
MseI TTAA 3 cut(s) 221, 716, 720
MslI CAYNNNNRTG 1 cut(s) 39
MspA1I CMGCKG 2 cut(s) 983, 1027
MspI CCGG 2 cut(s) 129, 757
MspR9I CCNGG 3 cut(s) 341, 758, 1061
MunI CAATTG 1 cut(s) 94
MvaI CCWGG 2 cut(s) 341, 1061
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 1 cut(s) 989
NciI CCSGG 1 cut(s) 758
NdeII GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
NlaIII CATG 4 cut(s) 394, 404, 507, 620
NmuCI GTSAC 5 cut(s) 32, 584, 766, 800, 976
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 3 cut(s) 394, 404, 620
PacI TTAATTAA 1 cut(s) 720
PaeI GCATGC 2 cut(s) 394, 620
PciI ACATGT 1 cut(s) 400
PdmI GAANNNNTTC 2 cut(s) 885, 1167
PfeI GAWTC 3 cut(s) 422, 841, 886
PfoI TCCNGGA 1 cut(s) 756
PkrI GCNGC 6 cut(s) 159, 471, 664, 985, 1026, 1125
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
PscI ACATGT 1 cut(s) 400
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 827
Psp6I CCWGG 2 cut(s) 339, 1059
PspEI GGTNACC 2 cut(s) 800, 976
PspFI CCCAGC 3 cut(s) 15, 633, 1027
PspGI CCWGG 2 cut(s) 339, 1059
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 1128
PsuI RGATCY 2 cut(s) 194, 202
PvuII CAGCTG 1 cut(s) 1027
RsaI GTAC 2 cut(s) 261, 399
RsaNI GTAC 2 cut(s) 260, 398
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 3 cut(s) 221, 716, 720
SatI GCNGC 6 cut(s) 158, 470, 663, 984, 1025, 1124
Sau3AI GATC 7 cut(s) 70, 112, 194, 202, 652, 775, 1008
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 341, 758, 1061
SfaNI GCATC 4 cut(s) 76, 169, 252, 855
SfcI CTRYAG 3 cut(s) 429, 987, 1124
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 39
SphI GCATGC 2 cut(s) 394, 620
Sse9I AATT 7 cut(s) 25, 94, 223, 544, 704, 717, 873
SsiI CCGC 2 cut(s) 663, 981
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 3 cut(s) 339, 756, 1059
StyI CCWWGG 1 cut(s) 271
TaiI ACGT 1 cut(s) 732
TaqI TCGA 3 cut(s) 115, 539, 1007
TasI AATT 7 cut(s) 25, 94, 223, 544, 704, 717, 873
TatI WGTACW 2 cut(s) 259, 397
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 3 cut(s) 422, 841, 886
Tru1I TTAA 3 cut(s) 221, 716, 720
Tru9I TTAA 3 cut(s) 221, 716, 720
TscAI CASTG 3 cut(s) 306, 816, 852
TseFI GTSAC 5 cut(s) 32, 584, 766, 800, 976
TseI GCWGC 5 cut(s) 157, 469, 983, 1024, 1123
Tsp45I GTSAC 5 cut(s) 32, 584, 766, 800, 976
TspDTI ATGAA 4 cut(s) 327, 339, 870, 1029
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 3 cut(s) 306, 816, 852
VpaK11BI GGWCC 1 cut(s) 131
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 25, 223, 704
XceI RCATGY 3 cut(s) 394, 404, 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 207
XmnI GAANNNNTTC 2 cut(s) 885, 1167
XspI CTAG 1 cut(s) 308
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.