Rorug01G0037300

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000257
Physical Location & Seq
Reverse (-)
6194486 .. 6199265
4780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0037300.1

Sequence Viewer

Length: 882 bp
ATGTTGAGGAGAAATACGAGGTTAGAGAAGGAGTACTTGTTCAGGAAGAGTAAAGAAACCCTAGAACGCACGCAGTACGAGAAGAAGCGCAAGATTAGACAAGCTCTACAAGAGGGAAAACCAATTCCTACTGAGCTTCGAAATGAAGAGGCCAAGCTTCGTCAAGAAATCGATCTCGAAGATGAAAACACTGCTGTCCCAAGGACACATATCGATGATGAGTATGCCAAAGCATCAGAAAGAGATCCCAAAATTTTGCTAACTACTTCCCGGGATCCGAGTGCTCCACTAATACAATTCACAAAGGAACTGAAACTTATTTTTCCTAATGCACAAGTAGTAAATCGTGGTGGTCAGGTTATTTCTGAAATTGTTGAAAGTTGCCGTGCACATGACTACACAGATGTTGTGTTGGTGCATGAACATCGTGGTAAACCTGATGGTTTGATTGTATGCCACCTTCCATATGGACCAACAGCTTATTTTCAATTATGCAATGTGGTTTCAAGACATGACATCAAGGACAAGAAAGCCATGGGAACGGTGCCACAGGCTTATCCACATTTGATTATTAACAATTTCACGACTAAGTTGGGTGAGCGGACAGCAAATATTTTAAAGCATCTTTTTCCAGTGCCAAAGCCAGATACAAAACGCATAATCACTTTTTCGAATGAGCAGGACTACATTTCATTCAGGCATCATATTTATGACAAGCCTGGAGGTCCTAAATCCATTGAGCTGAAGGAGATTGGTCCGCGGTTTGAGTTGAAGCTTTTCAAGATAAAGTTAGGAACAGTGGATCAGAATGAAGCCCAGAATGAATGGGTCCTCAAACCGTACATGAACACCGCCAAGAAACAGAAGTTTATAGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

293

Amino Acids

34.01

Weight (kDa)

9.32

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 90 - 261 7.9e-28 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 601
AccII CGCG 1 cut(s) 760
AciI CCGC 4 cut(s) 601, 758, 760, 852
AclWI GGATC 4 cut(s) 239, 269, 282, 810
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 3 cut(s) 35, 77, 842
AgsI TTSAA 5 cut(s) 377, 488, 507, 772, 781
AjnI CCWGG 1 cut(s) 718
AloI GAACNNNNNNTCC 2 cut(s) 23, 55
AluBI AGCT 6 cut(s) 104, 136, 157, 479, 742, 775
AluI AGCT 6 cut(s) 104, 136, 157, 479, 742, 775
Alw21I GWGCWC 2 cut(s) 286, 391
Alw44I GTGCAC 1 cut(s) 387
AlwI GGATC 4 cut(s) 239, 269, 282, 810
Ama87I CYCGRG 1 cut(s) 270
AoxI GGCC 1 cut(s) 150
ApaLI GTGCAC 1 cut(s) 387
ApoI RAATTY 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 4 cut(s) 470, 725, 755, 829
AsuC2I CCSGG 2 cut(s) 271, 272
AsuHPI GGTGA 1 cut(s) 608
AsuII TTCGAA 2 cut(s) 139, 671
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 4 cut(s) 470, 725, 755, 829
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 544
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
Bbv12I GWGCWC 2 cut(s) 286, 391
BccI CCATC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 369
BcgI CGANNNNNNTGC 2 cut(s) 407, 441
BciT130I CCWGG 1 cut(s) 720
BcnI CCSGG 2 cut(s) 271, 272
BfaI CTAG 1 cut(s) 62
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 3 cut(s) 271, 272, 720
Bme18I GGWCC 4 cut(s) 470, 725, 755, 829
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 4 cut(s) 470, 725, 755, 829
BmiI GGNNCC 3 cut(s) 276, 546, 830
BmrFI CCNGG 3 cut(s) 271, 272, 720
BmsI GCATC 3 cut(s) 242, 631, 709
BpmI CTGGAG 1 cut(s) 741
Bpu14I TTCGAA 2 cut(s) 139, 671
BpuMI CCSGG 2 cut(s) 271, 272
Bsa29I ATCGAT 2 cut(s) 171, 213
BsaJI CCNNGG 4 cut(s) 200, 270, 534, 758
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bse1I ACTGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 502
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 2 cut(s) 171, 213
BseDI CCNNGG 4 cut(s) 200, 270, 534, 758
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 632
BseRI GAGGAG 1 cut(s) 22
BseSI GKGCMC 1 cut(s) 391
Bsh1236I CGCG 1 cut(s) 760
BshFI GGCC 1 cut(s) 152
BshNI GGYRCC 1 cut(s) 544
BshVI ATCGAT 2 cut(s) 171, 213
BsiHKAI GWGCWC 2 cut(s) 286, 391
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 2 cut(s) 139, 671
Bsp1286I GDGCHC 2 cut(s) 286, 391
Bsp143I GATC 4 cut(s) 172, 244, 274, 802
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 4 cut(s) 601, 758, 760, 852
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 124
BspDI ATCGAT 2 cut(s) 171, 213
BspFNI CGCG 1 cut(s) 760
BspLI GGNNCC 3 cut(s) 276, 546, 830
BspPI GGATC 4 cut(s) 239, 269, 282, 810
BspT104I TTCGAA 2 cut(s) 139, 671
BspT107I GGYRCC 1 cut(s) 544
BsrBI CCGCTC 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 502
BsrI ACTGG 1 cut(s) 632
BssECI CCNNGG 4 cut(s) 200, 270, 534, 758
BssMI GATC 4 cut(s) 172, 244, 274, 802
BssT1I CCWWGG 2 cut(s) 200, 534
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 3 cut(s) 544, 799, 840
Bst6I CTCTTC 2 cut(s) 41, 141
BstBI TTCGAA 2 cut(s) 139, 671
BstC8I GCNNGC 1 cut(s) 71
BstDEI CTNAG 2 cut(s) 132, 588
BstDSI CCRYGG 2 cut(s) 534, 758
BstFNI CGCG 1 cut(s) 760
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 4 cut(s) 175, 247, 277, 805
BstMBI GATC 4 cut(s) 172, 244, 274, 802
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 3 cut(s) 269, 270, 718
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 244, 274
BstYI RGATCY 2 cut(s) 244, 274
Bsu15I ATCGAT 2 cut(s) 171, 213
BsuRI GGCC 1 cut(s) 152
BsuTUI ATCGAT 2 cut(s) 171, 213
BtgI CCRYGG 2 cut(s) 534, 758
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 189, 639, 804
Cac8I GCNNGC 1 cut(s) 71
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 4 cut(s) 470, 725, 755, 829
Cfr42I CCGCGG 1 cut(s) 761
Cfr9I CCCGGG 1 cut(s) 270
ClaI ATCGAT 2 cut(s) 171, 213
Csp6I GTAC 3 cut(s) 34, 76, 841
CviAII CATG 5 cut(s) 392, 419, 512, 535, 844
CviQI GTAC 3 cut(s) 34, 76, 841
DdeI CTNAG 2 cut(s) 132, 588
DpnI GATC 4 cut(s) 174, 246, 276, 804
DpnII GATC 4 cut(s) 172, 244, 274, 802
DraI TTTAAA 1 cut(s) 618
Eam1104I CTCTTC 2 cut(s) 41, 141
EarI CTCTTC 2 cut(s) 41, 141
Eco130I CCWWGG 2 cut(s) 200, 534
Eco47I GGWCC 4 cut(s) 470, 725, 755, 829
Eco57I CTGAAG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 270
EcoO109I RGGNCCY 2 cut(s) 725, 829
EcoRII CCWGG 1 cut(s) 718
EcoT14I CCWWGG 2 cut(s) 200, 534
ErhI CCWWGG 2 cut(s) 200, 534
FaeI CATG 5 cut(s) 395, 422, 515, 538, 847
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 1 cut(s) 182
FatI CATG 5 cut(s) 391, 418, 511, 534, 843
FauNDI CATATG 1 cut(s) 466
FspBI CTAG 1 cut(s) 62
GlaI GCGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 1 cut(s) 152
HapII CCGG 1 cut(s) 271
HhaI GCGC 1 cut(s) 90
Hin1II CATG 5 cut(s) 395, 422, 515, 538, 847
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 155, 773
HpaII CCGG 1 cut(s) 271
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 2 cut(s) 389, 434
Hpy188I TCNGA 4 cut(s) 238, 279, 367, 807
Hpy188III TCNNGA 6 cut(s) 43, 164, 176, 507, 583, 781
Hpy8I GTNNAC 2 cut(s) 389, 434
HpyAV CCTTC 3 cut(s) 22, 470, 739
HpyCH4III ACNGT 3 cut(s) 544, 799, 840
HpyCH4V TGCA 4 cut(s) 332, 389, 418, 495
HpyF3I CTNAG 2 cut(s) 132, 588
Hsp92II CATG 5 cut(s) 395, 422, 515, 538, 847
HspAI GCGC 1 cut(s) 88
KspI CCGCGG 1 cut(s) 761
Kzo9I GATC 4 cut(s) 172, 244, 274, 802
LmnI GCTCC 1 cut(s) 289
LweI GCATC 3 cut(s) 242, 631, 709
MaeI CTAG 1 cut(s) 62
MalI GATC 4 cut(s) 174, 246, 276, 804
MbiI CCGCTC 1 cut(s) 601
MboI GATC 4 cut(s) 172, 244, 274, 802
MboII GAAGA 4 cut(s) 58, 94, 158, 191
MflI RGATCY 2 cut(s) 244, 274
MhlI GDGCHC 2 cut(s) 286, 391
MluCI AATT 7 cut(s) 123, 252, 296, 369, 488, 577, 877
MnlI CCTC 5 cut(s) 12, 106, 142, 716, 842
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 2 cut(s) 573, 617
MslI CAYNNNNRTG 2 cut(s) 213, 708
MspA1I CMGCKG 1 cut(s) 760
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 3 cut(s) 271, 272, 720
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 1 cut(s) 760
NciI CCSGG 2 cut(s) 271, 272
NcoI CCATGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 466
NdeII GATC 4 cut(s) 172, 244, 274, 802
NlaIII CATG 5 cut(s) 395, 422, 515, 538, 847
NlaIV GGNNCC 3 cut(s) 276, 546, 830
NspV TTCGAA 2 cut(s) 139, 671
PdmI GAANNNNTTC 1 cut(s) 776
PpuMI RGGWCCY 2 cut(s) 725, 829
Psp5II RGGWCCY 2 cut(s) 725, 829
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 3 cut(s) 276, 546, 830
PspPI GGNCC 4 cut(s) 470, 725, 755, 829
PspPPI RGGWCCY 2 cut(s) 725, 829
PsuI RGATCY 2 cut(s) 244, 274
RsaI GTAC 3 cut(s) 35, 77, 842
RsaNI GTAC 3 cut(s) 34, 76, 841
RseI CAYNNNNRTG 2 cut(s) 213, 708
SacII CCGCGG 1 cut(s) 761
SaqAI TTAA 2 cut(s) 573, 617
Sau3AI GATC 4 cut(s) 172, 244, 274, 802
Sau96I GGNCC 4 cut(s) 470, 725, 755, 829
ScaI AGTACT 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 271, 272, 720
SduI GDGCHC 2 cut(s) 286, 391
SfaNI GCATC 3 cut(s) 242, 631, 709
Sfr303I CCGCGG 1 cut(s) 761
SfuI TTCGAA 2 cut(s) 139, 671
SgrBI CCGCGG 1 cut(s) 761
SinI GGWCC 4 cut(s) 470, 725, 755, 829
SmaI CCCGGG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 213, 708
Sse9I AATT 7 cut(s) 123, 252, 296, 369, 488, 577, 877
SsiI CCGC 4 cut(s) 601, 758, 760, 852
SspI AATATT 1 cut(s) 613
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 269, 270, 718
StyI CCWWGG 2 cut(s) 200, 534
TaaI ACNGT 3 cut(s) 544, 799, 840
TaqI TCGA 5 cut(s) 139, 171, 177, 213, 671
TasI AATT 7 cut(s) 123, 252, 296, 369, 488, 577, 877
TatI WGTACW 1 cut(s) 33
Tru1I TTAA 2 cut(s) 573, 617
Tru9I TTAA 2 cut(s) 573, 617
TscAI CASTG 3 cut(s) 196, 639, 804
TspDTI ATGAA 7 cut(s) 159, 198, 435, 681, 825, 837, 860
TspMI CCCGGG 1 cut(s) 270
TspRI CASTG 3 cut(s) 196, 639, 804
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 4 cut(s) 470, 725, 755, 829
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmaI CCCGGG 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 62
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.