Rh1DG059900

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000257
Physical Location & Seq
Reverse (-)
10329867 .. 10330142
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG059900.1

Sequence Viewer

Length: 276 bp
ATGGAGAAAGGGATACTAACCACAAACCATTCAGGAAATGATGGCCCACTTGGTCACACAAAAAGTCTAACACCATGGATGCTTACAGTTGCAGCAAGTAGCACAGACTGTCGGATCATTGACAACGTTGTTCTTGGAAATGGAAGCACGCTAGTTGAGATTTCATTGAACCCTTTCACATTAAATGGAACAAAGTTTCCATTGGTATATGGAAACAGTCACTGCTCTCAGTCCTCAGCTGGGAATTGTTCAGCTAGCTGCCTAGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

91

Amino Acids

9.47

Weight (kDa)

5.35

Isoelectric Point (pI)

24.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 126
AclWI GGATC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 169
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 3 cut(s) 239, 254, 258
AluI AGCT 3 cut(s) 239, 254, 258
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 222
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 92, 258
Asp700I GAANNNNTTC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 254
BbvCI CCTCAGC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 104, 245
BccI CCATC 1 cut(s) 35
BciVI GTATCC 1 cut(s) 6
BfaI CTAG 3 cut(s) 152, 255, 263
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 2 cut(s) 93, 259
BlsI GCNGC 2 cut(s) 94, 260
BmgT120I GGNCC 1 cut(s) 44
BmsI GCATC 1 cut(s) 69
BmtI GCTAGC 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 242, 249
BseXI GCAGC 2 cut(s) 104, 245
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 74
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 241, 248
BspOI GCTAGC 1 cut(s) 258
BspPI GGATC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 4 cut(s) 88, 110, 218, 269
BstC8I GCNNGC 2 cut(s) 149, 256
BstDEI CTNAG 2 cut(s) 228, 235
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 1 cut(s) 117
BstMBI GATC 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 104, 245
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 220, 274
Cac8I GCNNGC 2 cut(s) 149, 256
CaiI CAGNNNCTG 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 1 cut(s) 75
CviJI RGCY 4 cut(s) 45, 239, 254, 258
CviKI_1 RGCY 4 cut(s) 45, 239, 254, 258
DdeI CTNAG 2 cut(s) 228, 235
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 208, 210
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 93, 259
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 2 cut(s) 93, 259
FspBI CTAG 3 cut(s) 152, 255, 263
GluI GCNGC 2 cut(s) 93, 259
GsaI CCCAGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 1 cut(s) 33
HpyCH4III ACNGT 4 cut(s) 88, 110, 218, 269
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 228, 235
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 78
Kzo9I GATC 1 cut(s) 114
LpnPI CCDG 2 cut(s) 18, 225
Lsp1109I GCAGC 2 cut(s) 104, 245
LweI GCATC 1 cut(s) 69
MaeI CTAG 3 cut(s) 152, 255, 263
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 53, 218
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MluCI AATT 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 1 cut(s) 244
MroXI GAANNNNTTC 1 cut(s) 173
MseI TTAA 2 cut(s) 182, 274
MspA1I CMGCKG 1 cut(s) 239
NcoI CCATGG 1 cut(s) 74
NdeII GATC 1 cut(s) 114
NheI GCTAGC 1 cut(s) 254
NlaIII CATG 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 53, 218
PdmI GAANNNNTTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 94, 260
Psp1406I AACGTT 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 239
PspPI GGNCC 1 cut(s) 44
PstNI CAGNNNCTG 1 cut(s) 222
PvuII CAGCTG 1 cut(s) 239
SaqAI TTAA 2 cut(s) 182, 274
SatI GCNGC 2 cut(s) 93, 259
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 44
SetI ASST 4 cut(s) 129, 241, 256, 260
SfaNI GCATC 1 cut(s) 69
SgeI CNNG 9 cut(s) 45, 62, 87, 108, 146, 160, 164, 252, 267
Sse9I AATT 1 cut(s) 244
SspMI CTAG 3 cut(s) 152, 255, 263
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 4 cut(s) 88, 110, 218, 269
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 244
Tru1I TTAA 2 cut(s) 182, 274
Tru9I TTAA 2 cut(s) 182, 274
TscAI CASTG 2 cut(s) 227, 274
TseFI GTSAC 2 cut(s) 53, 218
TseI GCWGC 2 cut(s) 92, 258
Tsp45I GTSAC 2 cut(s) 53, 218
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 2 cut(s) 227, 274
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 3 cut(s) 152, 255, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.