Rmu_co8485349.1_g000001

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8485349.1
OG0000257
Physical Location & Seq
Reverse (-)
2 .. 649
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8485349.1_g000001.1.cds

Sequence Viewer

Length: 508 bp
atggctaagcgtgtttatatattcctcattctcatactcaatatgagcttactttgcaaagccattgataaagatagaaaggtccatattgtgtacctggaatcacttcctgatgatgaggtctattcatacatatctcatcaccttggtatactagaaagacttcaaagaacaagatcttgggactttatcgggttgtatgagaaaatccatcaaaatgcaactgttgagagtgatgtaattattggagtgtttgacagtggaacttggcatgaatctaatgaaggttttggtcctgcccccaagaaatggaaaggtgcttgtgcaggcagtaaaaatttcacttgtcacaacaagatcattggagctcggttttacgagccagcagattctgcaagagatgcaaatggtcatggaacccatgttgcctcaacagcagcagggaacaccgttaaggatgttagctattacggaatagcacaaggcactgcaacaggaggcgttccct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

169

Amino Acids

18.64

Weight (kDa)

7.09

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 309
AccI GTMKAC 1 cut(s) 151
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 96
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 3 cut(s) 48, 368, 465
AluI AGCT 3 cut(s) 48, 368, 465
Alw21I GWGCWC 1 cut(s) 370
AlwNI CAGNNNCTG 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 2 cut(s) 105, 162
AspS9I GGNCC 2 cut(s) 82, 293
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 2 cut(s) 82, 293
BanII GRGCYC 1 cut(s) 370
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 449
BccI CCATC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 98
BfaI CTAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 176
BisI GCNGC 1 cut(s) 438
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 2 cut(s) 82, 293
BmgT120I GGNCC 2 cut(s) 82, 293
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 391
Bpu1102I GCTNAGC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 370
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 176, 357
Bsp1720I GCTNAGC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 176, 357
BssNAI GTATAC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 3 cut(s) 226, 260, 451
BstAPI GCANNNNNTGC 2 cut(s) 392, 401
BstC8I GCNNGC 2 cut(s) 328, 384
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 463
BstKTI GATC 2 cut(s) 179, 360
BstMBI GATC 2 cut(s) 176, 357
BstMWI GCNNNNNNNGC 4 cut(s) 54, 392, 401, 434
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 265, 486
Cac8I GCNNGC 2 cut(s) 328, 384
CaiI CAGNNNCTG 1 cut(s) 392
Cfr13I GGNCC 2 cut(s) 82, 293
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 272, 413, 422
CviJI RGCY 6 cut(s) 5, 48, 62, 368, 382, 465
CviKI_1 RGCY 6 cut(s) 5, 48, 62, 368, 382, 465
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 178, 359
DpnII GATC 2 cut(s) 176, 357
Ecl136II GAGCTC 1 cut(s) 368
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 82, 293
Eco53kI GAGCTC 1 cut(s) 368
EcoICRI GAGCTC 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 3 cut(s) 275, 416, 425
FaqI GGGAC 1 cut(s) 197
FatI CATG 3 cut(s) 271, 412, 421
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 1 cut(s) 438
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 438
Hin1II CATG 3 cut(s) 275, 416, 425
HinfI GANTC 3 cut(s) 101, 275, 389
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 94, 152
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 94, 152
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 3 cut(s) 226, 260, 451
HpyCH4V TGCA 6 cut(s) 57, 221, 326, 395, 404, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 392, 401, 434
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 3 cut(s) 275, 416, 425
Kzo9I GATC 2 cut(s) 176, 357
LmnI GCTCC 1 cut(s) 365
LpnPI CCDG 8 cut(s) 83, 110, 123, 309, 312, 396, 426, 480
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 155
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 178, 359
MboI GATC 2 cut(s) 176, 357
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 2 cut(s) 240, 337
MnlI CCTC 4 cut(s) 35, 112, 439, 491
MroXI GAANNNNTTC 2 cut(s) 105, 162
MseI TTAA 1 cut(s) 453
MslI CAYNNNNRTG 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 54, 392, 401, 434
NdeII GATC 2 cut(s) 176, 357
NlaIII CATG 3 cut(s) 275, 416, 425
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 347
PdmI GAANNNNTTC 2 cut(s) 105, 162
PfeI GAWTC 3 cut(s) 101, 275, 389
PflMI CCANNNNNTGG 1 cut(s) 309
PkrI GCNGC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 2 cut(s) 82, 293
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 2 cut(s) 176, 357
Sau96I GGNCC 2 cut(s) 82, 293
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 370
SetI ASST 9 cut(s) 50, 84, 99, 123, 147, 289, 319, 370, 467
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 2 cut(s) 82, 293
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 2 cut(s) 240, 337
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 226, 260, 451
TasI AATT 2 cut(s) 240, 337
TfiI GAWTC 3 cut(s) 101, 275, 389
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 2 cut(s) 265, 493
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 117, 288, 297
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 265, 493
Van91I CCANNNNNTGG 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 82, 293
XapI RAATTY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 151
XmnI GAANNNNTTC 2 cut(s) 105, 162
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.