Rh1AG055200

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000257
Physical Location & Seq
Reverse (-)
9029769 .. 9030053
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG055200.1

Sequence Viewer

Length: 285 bp
ATGAACTCCACGAAAGATCCACAAGTAAACATACTAAAAAGTGAAGCCGAAAGAGATGCTGCTGCACCTATTGTTGCTTCCTTCTCATCACGTGGACCTAATCAAATTTTACCAGAAATTATCAAGCCAGATATAAGTGCCCCAGGGGTAGCTATATTGGCTGCTTATTCACCTATTGCTTTAATCACAGACAACCCTGAAGACAAGAGGCATGTAAATTACAGTATACTTTCCGGAACCTCCATGTCTTGCCCCCACGCCACTGGTGCAGCAGCATATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

94

Amino Acids

9.85

Weight (kDa)

5.49

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 23 - 94 2.1e-12 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 233
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 105
AcuI CTGAAG 1 cut(s) 219
AcvI CACGTG 1 cut(s) 92
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
AlwI GGATC 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 233
ApeKI GCWGC 5 cut(s) 59, 62, 161, 269, 272
ApoI RAATTY 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 142
BbrPI CACGTG 1 cut(s) 92
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 4 cut(s) 46, 49, 148, 281
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 144
BisI GCNGC 5 cut(s) 60, 63, 162, 270, 273
BlsI GCNGC 5 cut(s) 61, 64, 163, 271, 274
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 92
BsaJI CCNNGG 2 cut(s) 142, 143
BsaWI WCCGGW 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 268
BseAI TCCGGA 1 cut(s) 233
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 142, 143
BseNI ACTGG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 4 cut(s) 46, 49, 148, 281
BsgI GTGCAG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 142
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 16
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 142, 143
BssMI GATC 1 cut(s) 16
BssNAI GTATAC 1 cut(s) 227
Bst1107I GTATAC 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 92
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 158, 266
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 4 cut(s) 46, 49, 148, 281
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 95
CviAII CATG 2 cut(s) 212, 244
CviJI RGCY 4 cut(s) 47, 127, 152, 161
CviKI_1 RGCY 4 cut(s) 47, 127, 152, 161
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 219
Eco72I CACGTG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 2 cut(s) 215, 247
FaiI YATR 8 cut(s) 32, 134, 155, 213, 227, 245, 277, 279
FatI CATG 2 cut(s) 211, 243
FauNDI CATATG 1 cut(s) 277
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 5 cut(s) 60, 63, 162, 270, 273
Fsp4HI GCNGC 5 cut(s) 60, 63, 162, 270, 273
GluI GCNGC 5 cut(s) 60, 63, 162, 270, 273
HapII CCGG 1 cut(s) 234
Hin1II CATG 2 cut(s) 215, 247
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 162
Hpy166II GTNNAC 3 cut(s) 28, 95, 227
Hpy188III TCNNGA 1 cut(s) 234
Hpy8I GTNNAC 3 cut(s) 28, 95, 227
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 1 cut(s) 91
HpyCH4V TGCA 2 cut(s) 65, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 266
HpySE526I ACGT 1 cut(s) 91
Hsp92II CATG 2 cut(s) 215, 247
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 7 cut(s) 126, 129, 141, 156, 210, 247, 249
Lsp1109I GCAGC 4 cut(s) 46, 49, 148, 281
LweI GCATC 1 cut(s) 46
MaeII ACGT 1 cut(s) 91
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 212
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 3 cut(s) 105, 117, 217
MnlI CCTC 2 cut(s) 201, 250
MroI TCCGGA 1 cut(s) 233
MseI TTAA 2 cut(s) 182, 283
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 158, 266
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 215, 247
NlaIV GGNNCC 1 cut(s) 238
NspI RCATGY 1 cut(s) 215
PasI CCCWGGG 1 cut(s) 143
PkrI GCNGC 5 cut(s) 61, 64, 163, 271, 274
PmaCI CACGTG 1 cut(s) 92
PmlI CACGTG 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 142
PspCI CACGTG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 1 cut(s) 16
SaqAI TTAA 2 cut(s) 182, 283
SatI GCNGC 5 cut(s) 60, 63, 162, 270, 273
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 1 cut(s) 142
SetI ASST 6 cut(s) 70, 94, 100, 154, 175, 242
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 95
Sse9I AATT 3 cut(s) 105, 117, 217
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 1 cut(s) 94
TasI AATT 3 cut(s) 105, 117, 217
Tru1I TTAA 2 cut(s) 182, 283
Tru9I TTAA 2 cut(s) 182, 283
TscAI CASTG 1 cut(s) 268
TseI GCWGC 5 cut(s) 59, 62, 161, 269, 272
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 105
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.