Rorug01G0037600

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000257
Physical Location & Seq
Forward (+)
6223611 .. 6224839
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0037600.1

Sequence Viewer

Length: 546 bp
ATGGATGTTAGATTCAATGTTGCTGTTAATTCAAATCTGAGGCATGAAAAATCGGCGAATAGTTCATGCATTGCTCTAGAGATTACTGCTACAAGAATAAGTGTCATTGAGGCTGGAGCAGCAGTAATGACAACCAGAATATGCGTTGCGATTCGATCTTTTGCGAAACACCCATTGGGACTTCCGCCTTGCACGCGGAGGATTCGGTTGCCTGACACACGAGTCTTATATACTGTGTTACGATCGCCTCATATTGATAAGAAGTCCAGAGAACAGTTTCATATGATAACCAAGAAACAACTTCTCGTCATAGACACGAAGGCAAATGAGTTGCAAAAGAAGTTCTTTTGGTTAAAACGCCAGCGTATACTTGGAGCTCAATATGAAATTATATTTAATTCCAAGACCCGTTTGGATAAGGGAAAACTCCAGGCTTTGCTTAATAAGGAAACTGAAACGACTCCTGCAGCAGAATTGGGAATGGAAAATATGATATGCATTGGTTCAGTTATGGTTGCTTTCATAACAACCTTGTCAGCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

181

Amino Acids

20.4

Weight (kDa)

10.02

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S10 PF00338 59 - 115 5.2e-10 Ribosomal protein S10p/S20e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 367
AccII CGCG 1 cut(s) 196
AciI CCGC 2 cut(s) 185, 196
AgsI TTSAA 2 cut(s) 16, 33
AjnI CCWGG 1 cut(s) 429
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw21I GWGCWC 1 cut(s) 379
ApeKI GCWGC 2 cut(s) 119, 467
Asp700I GAANNNNTTC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 2 cut(s) 131, 479
BciT130I CCWGG 1 cut(s) 431
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 2 cut(s) 120, 468
BlsI GCNGC 2 cut(s) 121, 469
Bme1390I CCNGG 1 cut(s) 431
BmrFI CCNGG 1 cut(s) 431
BpmI CTGGAG 2 cut(s) 135, 413
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 10
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 29
BseXI GCAGC 2 cut(s) 131, 479
Bsh1236I CGCG 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 379
BslFI GGGAC 1 cut(s) 192
BsmFI GGGAC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 2 cut(s) 155, 242
BspACI CCGC 2 cut(s) 185, 196
BspCNI CTCAG 1 cut(s) 30
BspFNI CGCG 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 69
BssMI GATC 2 cut(s) 155, 242
BssNAI GTATAC 1 cut(s) 368
BssSI CACGAG 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 431
Bst4CI ACNGT 2 cut(s) 235, 276
BstC8I GCNNGC 2 cut(s) 194, 362
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 196
BstKTI GATC 2 cut(s) 158, 245
BstMBI GATC 2 cut(s) 155, 242
BstMCI CGRYCG 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 119, 193
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 131, 479
BstZ17I GTATAC 1 cut(s) 368
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 194, 362
CviAII CATG 2 cut(s) 44, 66
CviJI RGCY 3 cut(s) 113, 377, 434
CviKI_1 RGCY 3 cut(s) 113, 377, 434
DdeI CTNAG 1 cut(s) 38
DpnI GATC 2 cut(s) 157, 244
DpnII GATC 2 cut(s) 155, 242
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 429
EcoT22I ATGCAT 2 cut(s) 71, 500
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 2 cut(s) 47, 69
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FaqI GGGAC 1 cut(s) 192
FatI CATG 2 cut(s) 43, 65
FauNDI CATATG 1 cut(s) 282
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 2 cut(s) 120, 468
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 2 cut(s) 120, 468
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 120, 468
GsuI CTGGAG 2 cut(s) 135, 413
Hin1II CATG 2 cut(s) 47, 69
HinfI GANTC 5 cut(s) 12, 151, 202, 222, 460
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 77, 267
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 2 cut(s) 235, 276
HpyCH4V TGCA 5 cut(s) 69, 192, 334, 467, 498
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 193
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 2 cut(s) 47, 69
Kzo9I GATC 2 cut(s) 155, 242
LmnI GCTCC 2 cut(s) 116, 374
LpnPI CCDG 8 cut(s) 99, 148, 225, 280, 374, 416, 443, 477
Lsp1109I GCAGC 2 cut(s) 131, 479
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 237
MalI GATC 2 cut(s) 157, 244
MboI GATC 2 cut(s) 155, 242
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 4 cut(s) 28, 387, 397, 473
MlyI GAGTC 2 cut(s) 231, 454
MnlI CCTC 4 cut(s) 33, 103, 192, 258
Mph1103I ATGCAT 2 cut(s) 71, 500
MroXI GAANNNNTTC 1 cut(s) 276
MseI TTAA 4 cut(s) 27, 353, 396, 441
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 119, 193
NdeI CATATG 1 cut(s) 282
NdeII GATC 2 cut(s) 155, 242
NlaIII CATG 2 cut(s) 47, 69
NsiI ATGCAT 2 cut(s) 71, 500
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 3 cut(s) 12, 151, 202
PkrI GCNGC 2 cut(s) 121, 469
Ple19I CGATCG 1 cut(s) 245
PleI GAGTC 2 cut(s) 230, 454
PpsI GAGTC 2 cut(s) 230, 454
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PstI CTGCAG 1 cut(s) 469
PvuI CGATCG 1 cut(s) 245
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 4 cut(s) 27, 353, 396, 441
SatI GCNGC 2 cut(s) 120, 468
Sau3AI GATC 2 cut(s) 155, 242
SchI GAGTC 2 cut(s) 231, 454
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 379
SetI ASST 2 cut(s) 379, 533
SfcI CTRYAG 1 cut(s) 465
Sse9I AATT 4 cut(s) 28, 387, 397, 473
SsiI CCGC 2 cut(s) 185, 196
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 235, 276
TaqI TCGA 1 cut(s) 154
TasI AATT 4 cut(s) 28, 387, 397, 473
TfiI GAWTC 3 cut(s) 12, 151, 202
Tru1I TTAA 4 cut(s) 27, 353, 396, 441
Tru9I TTAA 4 cut(s) 27, 353, 396, 441
TseI GCWGC 2 cut(s) 119, 467
TspDTI ATGAA 5 cut(s) 54, 60, 269, 399, 511
XbaI TCTAGA 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 409
XmiI GTMKAC 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 1 cut(s) 77
Zsp2I ATGCAT 2 cut(s) 71, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.