Rorug01G0065000

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000257
Physical Location & Seq
Reverse (-)
10555364 .. 10555522
159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0065000.1

Sequence Viewer

Length: 159 bp
ATGTACGACTTTCTGCATAAACAAAATGGTGCCCTTTCACTTCAGTCCTTGCTCAAAGTTGCAGTTGATGTTTCCAGGGGAATGAAATACTTGCATCAAGATAATATTATCCACAGGGACTTGAAAGCTGCTAATCTTTTGATGGATGGAATGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

52

Amino Acids

5.94

Weight (kDa)

6.82

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 49 3.1e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 6 - 49 1.2e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 74
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 136, 140
BciT130I CCWGG 1 cut(s) 76
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 75
BseBI CCWGG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 1 cut(s) 115
BshNI GGYRCC 1 cut(s) 29
BslFI GGGAC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 76
BstF5I GGATG 1 cut(s) 151
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 115
BtsCI GGATG 1 cut(s) 151
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 1 cut(s) 128
CviKI_1 RGCY 1 cut(s) 128
CviQI GTAC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 74
FaiI YATR 1 cut(s) 18
FaqI GGGAC 1 cut(s) 131
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 98
HpyCH4V TGCA 3 cut(s) 16, 62, 94
LpnPI CCDG 3 cut(s) 61, 88, 100
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 76
MvaI CCWGG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 31
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SatI GCNGC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 1 cut(s) 34
SetI ASST 1 cut(s) 130
SfaNI GCATC 1 cut(s) 103
SgeI CNNG 7 cut(s) 61, 87, 88, 103, 110, 127, 133
SspI AATATT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 74
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.