Prupe.6G067800_v2.0.a1

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000257
Physical Location & Seq
Reverse (-)
4673631 .. 4675627
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G067800.1

Sequence Viewer

Length: 909 bp
ATGCAGGTCCATATTGTGTACTTGGGGTCTCTTCCTGATGGGGAGTACTCTCCTATGGCTCACCACCTTAACATTCTACAGAGTATTGTTCAGGGAAGTTCTCCTGAAAATTTATTGGTAAGAAGTTACAAAAGGAGTTTCAATGGATTTGCTGCCAAACTCACTGACCAGGAAAGAGAGAAACTTGCAAATGAAGGAAGTAGTCTCTGTTTTCCAAGCAGAACCTTCCAACTTCAAACAACAAGATCGTGGGAGTTTATGGGTTTAAACGAGAAAGTCAGTCGAAATTCTGTTGTTGAGAGTGATATTATTGTTGGTGTGATCGACACTGGAATTTGGCCTGAATCTGAGAGCTTTAAAGACGATGGTTTCGGTCCTCCTCCTAAGAGTTGGAAAGGTGTTTGTGACGGTGGCAAAAATTTCACCTGCAACAACAAGATAATTGGAGCTCGACGTTACACAGCAGAGTCTGCAAGGGATGAACTGGGTCATGGAACTCACACTGCCTCAACGGTAGCAGAGAATGCTGTTAAGGATGTAAACTTTTATGGACTAGCAAATGGTACTGCAGGAGGAGGTGTTCCTGCTGTGAGAATCGTAGCATATAAAGTCTGGGGCCTGTCCTTGGGTTACAATGTCTTGGCTGCTTTTGATGATGCTATTGCTGATGGTGTTAACATCATTTCAGTTTCAATGGGAACTGTTGAGGCTGGTATAGATGACGACCCTGTGGCAATTGCTTGGCCCATGAATGGTACCAGCAACAACGTTTCAACTGGTGCATTTGCTTATGGATCTGGACATATCAGTCCTGTAAATGCTATAAACCCAGGGCTTGTTTATGAAGCTTCTGAAGAAGATTACATAAGGTTGCTATGCACAATCTATGATGAAGGCAAAGTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

303

Amino Acids

32.49

Weight (kDa)

5.01

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
AasI GACNNNNNNGTC 1 cut(s) 807
Acc36I ACCTGC 1 cut(s) 434
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 755
AclI AACGTT 1 cut(s) 768
AclWI GGATC 1 cut(s) 802
AcsI RAATTY 4 cut(s) 109, 286, 333, 418
AcuI CTGAAG 1 cut(s) 873
AfaI GTAC 4 cut(s) 20, 47, 565, 757
AfiI CCNNNNNNNGG 2 cut(s) 625, 752
AgsI TTSAA 4 cut(s) 142, 236, 693, 774
AjnI CCWGG 2 cut(s) 168, 829
AloI GAACNNNNNNTCC 2 cut(s) 564, 596
AluBI AGCT 3 cut(s) 354, 449, 848
AluI AGCT 3 cut(s) 354, 449, 848
Alw21I GWGCWC 1 cut(s) 451
Alw26I GTCTC 2 cut(s) 33, 209
AlwI GGATC 1 cut(s) 802
AlwNI CAGNNNCTG 1 cut(s) 470
AoxI GGCC 3 cut(s) 338, 616, 743
ApeKI GCWGC 2 cut(s) 152, 644
ApoI RAATTY 4 cut(s) 109, 286, 333, 418
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
Asp718I GGTACC 1 cut(s) 755
AspS9I GGNCC 4 cut(s) 7, 374, 616, 744
AsuHPI GGTGA 2 cut(s) 53, 415
AvaII GGWCC 2 cut(s) 7, 374
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 451
Bbv12I GWGCWC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 139, 631
BccI CCATC 3 cut(s) 32, 359, 662
BciT130I CCWGG 2 cut(s) 170, 831
BcoDI GTCTC 2 cut(s) 33, 209
BfaI CTAG 1 cut(s) 554
BfmI CTRYAG 2 cut(s) 77, 567
BfuAI ACCTGC 1 cut(s) 434
BisI GCNGC 2 cut(s) 153, 645
BlsI GCNGC 2 cut(s) 154, 646
BmcAI AGTACT 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 170, 831
Bme18I GGWCC 2 cut(s) 7, 374
BmgT120I GGNCC 4 cut(s) 7, 374, 616, 744
BmiI GGNNCC 2 cut(s) 617, 757
BmrFI CCNGG 2 cut(s) 170, 831
BmrI ACTGGG 1 cut(s) 494
BmsI GCATC 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 494
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 624, 829, 830
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 625, 752
Bse1I ACTGG 3 cut(s) 334, 489, 781
BseBI CCWGG 2 cut(s) 170, 831
BseDI CCNNGG 3 cut(s) 624, 829, 830
BseGI GGATG 2 cut(s) 484, 541
BseLI CCNNNNNNNGG 2 cut(s) 625, 752
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 334, 489, 781
BseRI GAGGAG 2 cut(s) 369, 588
BseXI GCAGC 2 cut(s) 139, 631
BshFI GGCC 3 cut(s) 340, 618, 745
BshNI GGYRCC 1 cut(s) 755
BsiHKAI GWGCWC 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 625, 752
BsmAI GTCTC 2 cut(s) 33, 209
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 3 cut(s) 340, 618, 745
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 3 cut(s) 245, 321, 794
BspANI GGCC 3 cut(s) 340, 618, 745
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 617, 757
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 434
BspPI GGATC 1 cut(s) 802
BspT107I GGYRCC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 33
BsrI ACTGG 3 cut(s) 334, 489, 781
BssECI CCNNGG 3 cut(s) 624, 829, 830
BssMI GATC 3 cut(s) 245, 321, 794
BssT1I CCWWGG 1 cut(s) 624
Bst2UI CCWGG 2 cut(s) 170, 831
Bst4CI ACNGT 3 cut(s) 410, 514, 703
Bst6I CTCTTC 1 cut(s) 36
BstAPI GCANNNNNTGC 2 cut(s) 470, 524
BstDEI CTNAG 2 cut(s) 348, 384
BstF5I GGATG 2 cut(s) 484, 541
BstKTI GATC 3 cut(s) 248, 324, 797
BstMAI GTCTC 2 cut(s) 33, 209
BstMBI GATC 3 cut(s) 245, 321, 794
BstMWI GCNNNNNNNGC 2 cut(s) 470, 524
BstNI CCWGG 2 cut(s) 170, 831
BstSCI CCNGG 2 cut(s) 168, 829
BstSFI CTRYAG 2 cut(s) 77, 567
BstV1I GCAGC 2 cut(s) 139, 631
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuRI GGCC 3 cut(s) 340, 618, 745
BtsCI GGATG 2 cut(s) 484, 541
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 3 cut(s) 162, 327, 501
BveI ACCTGC 1 cut(s) 434
CaiI CAGNNNCTG 1 cut(s) 470
Cfr13I GGNCC 4 cut(s) 7, 374, 616, 744
Csp6I GTAC 4 cut(s) 19, 46, 564, 756
CviAII CATG 2 cut(s) 491, 748
CviQI GTAC 4 cut(s) 19, 46, 564, 756
DdeI CTNAG 2 cut(s) 348, 384
DpnI GATC 3 cut(s) 247, 323, 796
DpnII GATC 3 cut(s) 245, 321, 794
DraI TTTAAA 2 cut(s) 267, 358
DrdI GACNNNNNNGTC 1 cut(s) 807
DseDI GACNNNNNNGTC 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 624
Eco24I GRGCYC 1 cut(s) 451
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 7, 374
Eco53kI GAGCTC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 873
EcoICRI GAGCTC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 616
EcoRII CCWGG 2 cut(s) 168, 829
EcoT14I CCWWGG 1 cut(s) 624
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 624
FaeI CATG 2 cut(s) 494, 751
FatI CATG 2 cut(s) 490, 747
Fnu4HI GCNGC 2 cut(s) 153, 645
FokI GGATG 2 cut(s) 491, 548
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 2 cut(s) 153, 645
FspBI CTAG 1 cut(s) 554
GluI GCNGC 2 cut(s) 153, 645
HaeIII GGCC 3 cut(s) 340, 618, 745
Hin1II CATG 2 cut(s) 494, 751
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 3 cut(s) 344, 467, 594
HpaI GTTAAC 1 cut(s) 676
HphI GGTGA 2 cut(s) 53, 415
Hpy166II GTNNAC 3 cut(s) 19, 541, 676
Hpy188I TCNGA 2 cut(s) 349, 853
Hpy188III TCNNGA 3 cut(s) 35, 104, 798
Hpy8I GTNNAC 3 cut(s) 19, 541, 676
Hpy99I CGWCG 1 cut(s) 456
HpyAV CCTTC 3 cut(s) 188, 235, 887
HpyCH4III ACNGT 3 cut(s) 410, 514, 703
HpyCH4IV ACGT 2 cut(s) 454, 768
HpyCH4V TGCA 7 cut(s) 4, 188, 429, 473, 569, 782, 879
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 524
HpyF3I CTNAG 2 cut(s) 348, 384
HpySE526I ACGT 2 cut(s) 454, 768
Hsp92II CATG 2 cut(s) 494, 751
KpnI GGTACC 1 cut(s) 759
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 3 cut(s) 245, 321, 794
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 2 cut(s) 139, 631
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 554
MaeII ACGT 2 cut(s) 454, 768
MaeIII GTNAC 4 cut(s) 125, 404, 455, 629
MalI GATC 3 cut(s) 247, 323, 796
MboI GATC 3 cut(s) 245, 321, 794
MboII GAAGA 3 cut(s) 23, 866, 869
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 1 cut(s) 451
MluCI AATT 6 cut(s) 109, 286, 333, 418, 441, 735
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 2 cut(s) 253, 371
MnlI CCTC 6 cut(s) 387, 390, 517, 566, 569, 700
MseI TTAA 5 cut(s) 69, 266, 357, 531, 675
MspR9I CCNGG 2 cut(s) 170, 831
MssI GTTTAAAC 1 cut(s) 267
MunI CAATTG 1 cut(s) 735
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 2 cut(s) 170, 831
MwoI GCNNNNNNNGC 2 cut(s) 470, 524
NdeII GATC 3 cut(s) 245, 321, 794
NlaIII CATG 2 cut(s) 494, 751
NlaIV GGNNCC 2 cut(s) 617, 757
NmuCI GTSAC 1 cut(s) 404
PaqCI CACCTGC 1 cut(s) 434
PasI CCCWGGG 1 cut(s) 830
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 2 cut(s) 344, 594
PkrI GCNGC 2 cut(s) 154, 646
PleI GAGTC 1 cut(s) 475
PmeI GTTTAAAC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 451
Psp1406I AACGTT 1 cut(s) 768
Psp6I CCWGG 2 cut(s) 168, 829
PspGI CCWGG 2 cut(s) 168, 829
PspN4I GGNNCC 2 cut(s) 617, 757
PspPI GGNCC 4 cut(s) 7, 374, 616, 744
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 1 cut(s) 794
RsaI GTAC 4 cut(s) 20, 47, 565, 757
RsaNI GTAC 4 cut(s) 19, 46, 564, 756
SacI GAGCTC 1 cut(s) 451
SaqAI TTAA 5 cut(s) 69, 266, 357, 531, 675
SatI GCNGC 2 cut(s) 153, 645
Sau3AI GATC 3 cut(s) 245, 321, 794
Sau96I GGNCC 4 cut(s) 7, 374, 616, 744
ScaI AGTACT 1 cut(s) 47
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 2 cut(s) 170, 831
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 2 cut(s) 77, 567
SinI GGWCC 2 cut(s) 7, 374
Sse9I AATT 6 cut(s) 109, 286, 333, 418, 441, 735
SspMI CTAG 1 cut(s) 554
SstI GAGCTC 1 cut(s) 451
StyD4I CCNGG 2 cut(s) 168, 829
StyI CCWWGG 1 cut(s) 624
TaaI ACNGT 3 cut(s) 410, 514, 703
TaiI ACGT 2 cut(s) 457, 771
TaqI TCGA 3 cut(s) 283, 324, 451
TaqII GACCGA 1 cut(s) 362
TasI AATT 6 cut(s) 109, 286, 333, 418, 441, 735
TatI WGTACW 2 cut(s) 18, 45
TfiI GAWTC 2 cut(s) 344, 594
Tru1I TTAA 5 cut(s) 69, 266, 357, 531, 675
Tru9I TTAA 5 cut(s) 69, 266, 357, 531, 675
TscAI CASTG 3 cut(s) 169, 334, 508
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 152, 644
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 5 cut(s) 207, 495, 764, 858, 906
TspRI CASTG 3 cut(s) 169, 334, 508
VpaK11BI GGWCC 2 cut(s) 7, 374
XapI RAATTY 4 cut(s) 109, 286, 333, 418
XspI CTAG 1 cut(s) 554
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.